View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8249_high_7 (Length: 423)

Name: NF8249_high_7
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8249_high_7
NF8249_high_7
[»] chr7 (2 HSPs)
chr7 (29-406)||(41875669-41876046)
chr7 (217-279)||(5269468-5269530)
[»] chr8 (4 HSPs)
chr8 (224-282)||(31705029-31705089)
chr8 (224-282)||(1470922-1470981)
chr8 (55-126)||(40868457-40868528)
chr8 (217-266)||(41620374-41620423)
[»] chr3 (1 HSPs)
chr3 (212-280)||(32069084-32069151)
[»] chr2 (2 HSPs)
chr2 (224-268)||(3423849-3423893)
chr2 (242-281)||(6993791-6993831)
[»] chr1 (4 HSPs)
chr1 (214-266)||(36641810-36641862)
chr1 (152-206)||(24817795-24817849)
chr1 (55-112)||(24817944-24818001)
chr1 (228-268)||(45234146-45234186)
[»] chr6 (1 HSPs)
chr6 (224-282)||(27857320-27857378)
[»] chr5 (1 HSPs)
chr5 (230-282)||(35960365-35960417)
[»] chr4 (1 HSPs)
chr4 (224-264)||(1404367-1404407)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 29 - 406
Target Start/End: Original strand, 41875669 - 41876046
Alignment:
Q  29 gagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttacaccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttgatt 128  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875669 gagatgaagttgcgtatatattacgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttgatt 41875768  T
Q  129 aatgttgattatagatcatccaagacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattatataagtacttacttataaataag 228  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875769 aatgttgattatagatcatccaagacttatttagataaacaacttaattttgtgttagtagcaaaaacacttattatataagtacttacttataaataag 41875868  T
Q  229 ttatttctgtactaaaagataaaataaggtcaaattatttaatataagctataacctaatttttatctgttataatcatttttcagtgttgaattgattt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41875869 ttatttctgtactaaaagataaaataaggtcaaattatttaatataagctataacctaatttttatccgttataatcatttttcagtgttgaattgattt 41875968  T
Q  329 tttgagctataataataagatctacaacaacatgttacttttatttattaaacttgtaaaacttgatgtctaaaatat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41875969 tttgagctataataataagatctacaacaacatgttacttttatttattaaacttctaaaacttgatgtctaaaatat 41876046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 5269468 - 5269530
Alignment:
Q  217 cttataaataagttatttctgtactaaaagataaaataaggtcaaattatttaatataagcta 279  Q
    |||||| |||| |||||||| || ||||||||||||||| |||||||||||| | ||||||||    
T  5269468 cttatatataaattatttctttaataaaagataaaataaagtcaaattatttcagataagcta 5269530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 31705029 - 31705089
Alignment:
Q  224 ataagttatttctgtactaaaagataaaataaggtcaaatta--tttaatataagctataa 282  Q
    ||||| |||||||||||||||||||||||| | |||||||||  ||| |||||||||||||    
T  31705029 ataagctatttctgtactaaaagataaaatcatgtcaaattacgtttcatataagctataa 31705089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 1470981 - 1470922
Alignment:
Q  224 ataagttatttctgtactaaaagataaaataaggtcaaatta-tttaatataagctataa 282  Q
    ||||| ||||||| || ||||||||||||||| ||||||||| ||| |||||||||||||    
T  1470981 ataagctatttctataataaaagataaaataaagtcaaattactttcatataagctataa 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 40868528 - 40868457
Alignment:
Q  55 caagaaaccggtgctatatttacaccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttga 126  Q
    |||||||| |||||||| |||| || | ||| ||||||||| |||||||||||||| | ||| |||||||||    
T  40868528 caagaaactggtgctatttttatacatccttataatgatgggcgcatactgaggtacactgttgaatgttga 40868457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 41620423 - 41620374
Alignment:
Q  217 cttataaataagttatttctgtactaaaagataaaataaggtcaaattat 266  Q
    |||||| ||||||||||| ||||  |||||||||||||| ||||||||||    
T  41620423 cttatatataagttatttttgtaacaaaagataaaataaagtcaaattat 41620374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 32069084 - 32069151
Alignment:
Q  212 acttacttataaataagttatttctgtactaaaagataaaataaggtcaaattatttaatataagctat 280  Q
    ||||| ||||||||||||||||||| ||  |||||||||||||| ||||||| |||| ||| |||||||    
T  32069084 acttaattataaataagttatttctataa-aaaagataaaataaagtcaaataatttcataaaagctat 32069151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 3423893 - 3423849
Alignment:
Q  224 ataagttatttctgtactaaaagataaaataaggtcaaattattt 268  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  3423893 ataagttatttttgtaccaaaagataaaataaagtcaaattattt 3423849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 6993831 - 6993791
Alignment:
Q  242 aaaagataaaataaggtcaaattat-ttaatataagctata 281  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  6993831 aaaagataaaataaggtcaaattatattcatataagctata 6993791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 36641810 - 36641862
Alignment:
Q  214 ttacttataaataagttatttctgtactaaaagataaaataaggtcaaattat 266  Q
    ||||||||| ||||||||||||| ||  |||||||||||||| ||||||||||    
T  36641810 ttacttatatataagttatttctataacaaaagataaaataaagtcaaattat 36641862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 24817849 - 24817795
Alignment:
Q  152 gacttatttagataaacaatttaattttgtgttagtagcaaaaacacttattata 206  Q
    ||||||||||||||||||| |||| || ||||| ||| || ||||||||||||||    
T  24817849 gacttatttagataaacaacttaacttagtgtttgtaacataaacacttattata 24817795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 24818001 - 24817944
Alignment:
Q  55 caagaaaccggtgctatatttacaccttcttctaatgatggccgcatactgaggtaga 112  Q
    ||||||||  ||||||| | || ||||||||| ||||||||||||||| |||||||||    
T  24818001 caagaaacaagtgctatctatataccttcttcaaatgatggccgcataatgaggtaga 24817944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 45234146 - 45234186
Alignment:
Q  228 gttatttctgtactaaaagataaaataaggtcaaattattt 268  Q
    ||||||||| || ||||||||||||||| ||||||||||||    
T  45234146 gttatttctataataaaagataaaataaagtcaaattattt 45234186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 27857320 - 27857378
Alignment:
Q  224 ataagttatttctgtactaaaagataaaataaggtcaaattatttaatataagctataa 282  Q
    |||||||| || ||||  |||||||||||||| |||||| | |||||||||||||||||    
T  27857320 ataagttacttttgtaacaaaagataaaataaagtcaaactgtttaatataagctataa 27857378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 35960365 - 35960417
Alignment:
Q  230 tatttctgtactaaaagataaaataaggtcaaattatttaatataagctataa 282  Q
    ||||||| || ||||||||||||||| |||||| ||||| |||||| ||||||    
T  35960365 tatttctataataaaagataaaataaagtcaaactatttcatataaactataa 35960417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 1404367 - 1404407
Alignment:
Q  224 ataagttatttctgtactaaaagataaaataaggtcaaatt 264  Q
    ||||| ||||||| || ||||||||||||||||||||||||    
T  1404367 ataagctatttctataataaaagataaaataaggtcaaatt 1404407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University