View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8249_low_1 (Length: 1267)

Name: NF8249_low_1
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8249_low_1
NF8249_low_1
[»] chr6 (22 HSPs)
chr6 (115-1256)||(6723900-6725052)
chr6 (16-118)||(6725725-6725827)
chr6 (597-722)||(17533390-17533513)
chr6 (576-798)||(212003-212225)
chr6 (602-695)||(16109907-16110000)
chr6 (597-688)||(7495004-7495095)
chr6 (450-557)||(7495174-7495281)
chr6 (458-662)||(8485841-8486037)
chr6 (451-508)||(17533565-17533622)
chr6 (711-819)||(26545988-26546095)
chr6 (451-819)||(12311897-12312254)
chr6 (450-502)||(1929073-1929125)
chr6 (617-765)||(2988053-2988200)
chr6 (603-803)||(12283608-12283807)
chr6 (791-892)||(17533274-17533381)
chr6 (1116-1255)||(22000498-22000636)
chr6 (576-681)||(32340284-32340388)
chr6 (459-548)||(16109785-16109876)
chr6 (618-681)||(688087-688150)
chr6 (829-892)||(1929155-1929217)
chr6 (617-681)||(30928364-30928428)
chr6 (582-681)||(10229461-10229560)
[»] chr1 (32 HSPs)
chr1 (450-892)||(31183338-31183775)
chr1 (450-889)||(29488143-29488569)
chr1 (372-722)||(22791058-22791399)
chr1 (450-714)||(46594202-46594463)
chr1 (445-734)||(4073506-4073786)
chr1 (584-858)||(2136805-2137083)
chr1 (459-783)||(50461121-50461435)
chr1 (584-714)||(50709546-50709675)
chr1 (652-783)||(51273129-51273262)
chr1 (450-650)||(17936244-17936433)
chr1 (451-662)||(14286910-14287115)
chr1 (787-892)||(22790945-22791053)
chr1 (457-508)||(50709454-50709505)
chr1 (459-558)||(50727149-50727243)
chr1 (458-681)||(4973087-4973306)
chr1 (576-662)||(16122800-16122885)
chr1 (582-681)||(13558498-13558597)
chr1 (634-701)||(30193412-30193478)
chr1 (615-681)||(38682929-38682995)
chr1 (601-653)||(30902397-30902449)
chr1 (599-658)||(270965-271024)
chr1 (599-653)||(781883-781937)
chr1 (457-681)||(31513625-31513843)
chr1 (451-681)||(40693821-40694046)
chr1 (787-829)||(50709686-50709728)
chr1 (451-681)||(17116139-17116365)
chr1 (618-771)||(4966736-4966887)
chr1 (584-645)||(13643833-13643894)
chr1 (458-505)||(2136732-2136779)
chr1 (791-858)||(16123013-16123084)
chr1 (582-668)||(50726668-50726754)
chr1 (451-504)||(10443426-10443478)
[»] chr2 (33 HSPs)
chr2 (450-892)||(26352483-26352920)
chr2 (459-818)||(45388644-45388997)
chr2 (528-889)||(36925503-36925856)
chr2 (585-892)||(3353132-3353439)
chr2 (458-722)||(43355706-43355967)
chr2 (582-779)||(18858483-18858680)
chr2 (466-806)||(36525847-36526170)
chr2 (576-828)||(44986408-44986650)
chr2 (599-726)||(16496758-16496884)
chr2 (451-734)||(36467100-36467374)
chr2 (459-640)||(30776576-30776750)
chr2 (457-681)||(7017729-7017950)
chr2 (576-673)||(41323899-41323996)
chr2 (458-522)||(14749467-14749531)
chr2 (458-681)||(35298334-35298551)
chr2 (576-681)||(37272917-37273022)
chr2 (604-825)||(11457848-11458070)
chr2 (443-508)||(36925450-36925515)
chr2 (829-892)||(14749544-14749606)
chr2 (576-681)||(11562733-11562836)
chr2 (451-662)||(38221640-38221845)
chr2 (834-892)||(45389019-45389076)
chr2 (606-771)||(30485631-30485795)
chr2 (459-508)||(18858366-18858417)
chr2 (621-681)||(40498676-40498736)
chr2 (828-892)||(43344689-43344752)
chr2 (582-637)||(18561115-18561170)
chr2 (582-681)||(42794781-42794880)
chr2 (576-662)||(2788913-2788999)
chr2 (619-661)||(38140639-38140681)
chr2 (576-662)||(38558674-38558759)
chr2 (459-560)||(17328607-17328707)
chr2 (375-440)||(38221864-38221929)
[»] chr7 (27 HSPs)
chr7 (450-888)||(31396988-31397423)
chr7 (459-888)||(44797994-44798423)
chr7 (457-720)||(48138396-48138652)
chr7 (583-735)||(46192231-46192383)
chr7 (459-646)||(2483666-2483847)
chr7 (459-691)||(16817742-16817964)
chr7 (628-701)||(24699810-24699882)
chr7 (450-522)||(24699733-24699805)
chr7 (458-536)||(9229491-9229569)
chr7 (723-828)||(47277897-47278002)
chr7 (451-681)||(45648231-45648455)
chr7 (459-508)||(46192423-46192472)
chr7 (458-560)||(34471659-34471761)
chr7 (459-548)||(6562382-6562470)
chr7 (618-683)||(25482609-25482674)
chr7 (787-892)||(48138659-48138767)
chr7 (451-662)||(45492049-45492258)
chr7 (577-627)||(47277149-47277199)
chr7 (615-660)||(3094258-3094303)
chr7 (584-681)||(3751503-3751600)
chr7 (576-819)||(22201110-22201353)
chr7 (576-819)||(22236468-22236711)
chr7 (618-734)||(7857938-7858053)
chr7 (584-771)||(42040377-42040561)
chr7 (576-662)||(47843793-47843879)
chr7 (458-681)||(43495761-43495977)
chr7 (617-681)||(40836439-40836503)
[»] chr4 (32 HSPs)
chr4 (443-819)||(44746290-44746663)
chr4 (581-829)||(43770428-43770673)
chr4 (449-704)||(34075140-34075392)
chr4 (601-896)||(21619592-21619888)
chr4 (581-819)||(22198747-22198980)
chr4 (606-803)||(34733793-34733988)
chr4 (458-536)||(47724738-47724816)
chr4 (576-681)||(10037871-10037976)
chr4 (528-681)||(53586369-53586516)
chr4 (599-825)||(44987299-44987522)
chr4 (709-827)||(35823460-35823578)
chr4 (446-508)||(43770811-43770873)
chr4 (372-508)||(6255212-6255346)
chr4 (787-892)||(10632247-10632355)
chr4 (458-771)||(19721627-19721931)
chr4 (576-811)||(4775801-4776034)
chr4 (658-767)||(25204405-25204522)
chr4 (450-564)||(38948586-38948694)
chr4 (583-681)||(45774026-45774124)
chr4 (451-560)||(2295266-2295375)
chr4 (599-680)||(28102017-28102098)
chr4 (453-508)||(22199015-22199070)
chr4 (458-544)||(21619458-21619544)
chr4 (576-662)||(27675450-27675536)
chr4 (576-674)||(35823602-35823700)
chr4 (582-659)||(35103543-35103620)
chr4 (829-892)||(47724673-47724735)
chr4 (621-771)||(53018485-53018632)
chr4 (459-518)||(54163430-54163489)
chr4 (459-549)||(47923080-47923170)
chr4 (458-503)||(2243042-2243087)
chr4 (788-850)||(38947679-38947745)
[»] chr3 (41 HSPs)
chr3 (459-829)||(31489382-31489749)
chr3 (458-808)||(24611339-24611686)
chr3 (459-829)||(50387090-50387442)
chr3 (458-714)||(43471675-43471921)
chr3 (461-707)||(47014160-47014402)
chr3 (449-734)||(24120952-24121235)
chr3 (620-892)||(21842588-21842863)
chr3 (620-892)||(21858231-21858504)
chr3 (576-734)||(1341626-1341786)
chr3 (720-892)||(47014501-47014676)
chr3 (720-892)||(21853839-21854013)
chr3 (450-562)||(2111315-2111426)
chr3 (453-536)||(35433397-35433480)
chr3 (450-536)||(12176632-12176718)
chr3 (599-757)||(20619294-20619452)
chr3 (458-536)||(36172084-36172162)
chr3 (646-782)||(8913548-8913685)
chr3 (582-681)||(29324097-29324196)
chr3 (459-520)||(16343066-16343127)
chr3 (451-680)||(27164037-27164258)
chr3 (1116-1255)||(37983459-37983597)
chr3 (719-829)||(53530563-53530673)
chr3 (1130-1255)||(17688218-17688342)
chr3 (761-891)||(24121239-24121372)
chr3 (453-557)||(20819092-20819196)
chr3 (641-722)||(2111477-2111558)
chr3 (599-681)||(38489734-38489816)
chr3 (787-829)||(43471932-43471974)
chr3 (582-668)||(45472615-45472701)
chr3 (828-892)||(16343146-16343210)
chr3 (581-668)||(20369268-20369354)
chr3 (787-858)||(1341547-1341622)
chr3 (619-681)||(36504873-36504935)
chr3 (616-681)||(20179041-20179106)
chr3 (576-680)||(40614831-40614935)
chr3 (459-502)||(8913383-8913426)
chr3 (829-892)||(36172019-36172081)
chr3 (451-558)||(39615162-39615268)
chr3 (462-492)||(27768115-27768145)
chr3 (607-668)||(35296463-35296524)
chr3 (827-892)||(35433483-35433547)
[»] chr8 (24 HSPs)
chr8 (576-892)||(37231785-37232104)
chr8 (459-858)||(9136558-9136950)
chr8 (453-899)||(14179948-14180402)
chr8 (633-829)||(2813633-2813829)
chr8 (652-783)||(11558763-11558894)
chr8 (582-765)||(18928485-18928668)
chr8 (459-644)||(35536834-35537012)
chr8 (451-534)||(2813888-2813971)
chr8 (599-673)||(12006746-12006820)
chr8 (718-829)||(31431248-31431359)
chr8 (459-521)||(11558585-11558647)
chr8 (458-681)||(25429920-25430137)
chr8 (582-681)||(6166450-6166549)
chr8 (528-681)||(32855987-32856133)
chr8 (761-892)||(39297500-39297637)
chr8 (653-734)||(39297643-39297724)
chr8 (761-856)||(22470724-22470822)
chr8 (585-679)||(13003382-13003474)
chr8 (459-550)||(43100915-43101006)
chr8 (584-662)||(18320728-18320805)
chr8 (599-681)||(23877400-23877482)
chr8 (371-440)||(11789624-11789693)
chr8 (617-662)||(17748925-17748970)
chr8 (788-825)||(32579149-32579186)
[»] chr5 (25 HSPs)
chr5 (587-892)||(7732241-7732545)
chr5 (458-714)||(42990580-42990830)
chr5 (450-751)||(12118204-12118496)
chr5 (576-798)||(41634401-41634610)
chr5 (586-828)||(12848318-12848545)
chr5 (585-734)||(27972008-27972159)
chr5 (451-634)||(39329411-39329588)
chr5 (446-734)||(16756032-16756312)
chr5 (582-765)||(2627883-2628069)
chr5 (599-681)||(5836542-5836624)
chr5 (451-681)||(29231085-29231309)
chr5 (582-765)||(26564971-26565153)
chr5 (742-816)||(39329596-39329670)
chr5 (729-819)||(8802687-8802777)
chr5 (601-660)||(26016613-26016672)
chr5 (788-888)||(41634663-41634766)
chr5 (623-681)||(13407268-13407326)
chr5 (753-829)||(36906776-36906852)
chr5 (787-819)||(39700891-39700923)
chr5 (604-671)||(7612609-7612676)
chr5 (458-548)||(34764724-34764814)
chr5 (459-560)||(3387180-3387281)
chr5 (716-813)||(5836653-5836750)
chr5 (459-508)||(7732127-7732176)
chr5 (617-662)||(31114025-31114070)
[»] scaffold0001 (1 HSPs)
scaffold0001 (451-829)||(394061-394425)
[»] scaffold0565 (1 HSPs)
scaffold0565 (392-668)||(7727-8005)
[»] scaffold0051 (2 HSPs)
scaffold0051 (458-520)||(53708-53770)
scaffold0051 (827-892)||(53789-53854)
[»] scaffold0495 (1 HSPs)
scaffold0495 (582-681)||(6176-6275)


Alignment Details
Target: chr6 (Bit Score: 921; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 921; E-Value: 0
Query Start/End: Original strand, 115 - 1256
Target Start/End: Complemental strand, 6725052 - 6723900
Alignment:
Q  115 ctaatgttgaaatatacaatgcagctctgcaaagtttgtactttatgtccgttcactggattcaaagtctcttatagtataagattgaattatatacgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6725052 ctaatgttgaaatatacaatgcagctctgcaaagtttgtactttatgtccgttcactggattcaaagtctcttatagtataagattgaattatatacgtt 6724953  T
Q  215 caaaccatgaaaggatgaaactccatcagtaccataatcattccaacatttaacgtttatttgggtttgtgggctgcacttgcacctactttgtgcggtt 314  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724952 caaaccatgaaaggatgaaattccatcagtaccataatcattccaacatttaacgtttatttgggtttgtgggctgcacttgcacctactttgtgcggtt 6724853  T
Q  315 tctttatgccaccaggataattactagtgtgcaagctaagaggagatacacct---aaccccggatactccataatagaaacgtacccgtatcatataca 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||| ||||||||||     
T  6724852 tctttatgccaccaggataattactagtgtgcaagctaagaggagatacacctatgaaccccggatactccataatagaaacggacccatatcatatacg 6724753  T
Q  412 tattagataccgatactctacggatactcacatccatagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcat 511  Q
    ||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  6724752 tatcagatatcgatactctacggatactcacatccacagattattggaattaattattttaatttaaaatatatattttatcgaatacttataagatcct 6724653  T
Q  512 cgacagatacaaacaaatacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaa-t 610  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||| |    
T  6724652 cgacaaatacacacaaatacttataagatacttcacatagacgtatcctggaagga-aaaaaaatgaatggtaaaaaagtgaggctgtgttgtgaaaatt 6724554  T
Q  611 tcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaaga 710  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6724553 tcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatatttttggtggatgaaagcaaaga 6724454  T
Q  711 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 810  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  6724453 gagataggagattcaatcaataaataataaacaaactttgtattgagttcttttattgatgcatttgctgatactataacatacgaatgaaaatagaata 6724354  T
Q  811 tgatttatataa---------aaacttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaagggtca 901  Q
    | ||||||||||         |   |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||    
T  6724353 taatttatataatttttttttatttttttttatattttgattgcatgtattatttttctgtaaatgatggcttttatgattatatagtattaaaggatca 6724254  T
Q  902 tcgatgccnnnnnnnnnccaagtatttcacctcacaaatgccaacatgtgaaattatgccaacatgtctttttaacttgattgtccataaaaagaagaga 1001  Q
    |||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724253 tcgatgctttttttttttgaagtatttcacctcacaaatgccaacatgtgaaattatgccaacatgtctttttaacttgattgtccataaaaagaagaga 6724154  T
Q  1002 aatgtccctaaaaacagttgtgattgtctctagaatatgatatgtcctatacataaataaatttctacatttttgctattcacaaagtagattacatggt 1101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724153 aatgtccctaaaaacagttgtgattgtctctagaatatgatatgtcctatacataaataaatttctacatttttgctattcacaaagtagattacatggt 6724054  T
Q  1102 tatcatttcttaattgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgc 1201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724053 tatcatttcttaattgaaaagaaaactaaagttgcacatgaggaaccaat-ccaactacaccataagcttacttccatcttcaaatgtatgctaatatgc 6723955  T
Q  1202 cgttttacacaatttgtggtaacaaattcatagaagccaacccattcatctctgc 1256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6723954 cgttttacacaatttgtggtaacaaattcatagaagccaacccattcatctctgc 6723900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 6725827 - 6725725
Alignment:
Q  16 tcattgttatcatatattctttaaaataaaaatttgtttcattctgctgacaaatctccagaagttatagtcaaaaccatcttatcaaggtgtccctccc 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6725827 tcattgttatcgtatattctttaaaataaaaatttgtttcattctgctgacaaatctccagaagttatagtcaaaaccatcttatcaaggtgtccctccc 6725728  T
Q  116 taa 118  Q
    |||    
T  6725727 taa 6725725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 597 - 722
Target Start/End: Complemental strand, 17533513 - 17533390
Alignment:
Q  597 tgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtg 696  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||    
T  17533513 tgtgttgtgaaaattcaatggagatgtatatgatt-aatttaagatatgaatcactgtaattgtttttcgat-aaccaattaaaaattatgtttttggtg 17533416  T
Q  697 gatgaaagcaaagagagataggagat 722  Q
    |||||||| || |||||| |||||||    
T  17533415 gatgaaagtaatgagagagaggagat 17533390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 576 - 798
Target Start/End: Complemental strand, 212225 - 212003
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| |||||||||||||  ||||  |||||| ||| ||| ||||| ||||  ||| |||||||||||||||| | ||||||||||||| ||||||| ||    
T  212225 tgaagggtaaaaaagtgaaactgtactgtgaagatttaatagagatctatacaatttaatttaagatatgaattaatataattgtttttagattaactaa 212126  T
Q  676 ttaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatt 775  Q
    |||||||||||||||| | ||||||||   ||  ||||| |  | |||||||||||||| | |||||||||||||| || ||||||||||||||||  ||    
T  212125 ttaaaaattatgttttcgatggatgaagataactagagacaacatattcaatcaatcaacattaaacaaactttgtttttagttcttttattgatgtgtt 212026  T
Q  776 tgttgatactataacatatgaat 798  Q
    |||||||| | ||||| ||||||    
T  212025 tgttgatattctaacagatgaat 212003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 602 - 695
Target Start/End: Original strand, 16109907 - 16110000
Alignment:
Q  602 tgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggt 695  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  16109907 tgtgaaaattcaatggagatgtataagattcaatataagatatgaattagtttaattattttttgattaaccaattaaaaattatgtttttggt 16110000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 597 - 688
Target Start/End: Complemental strand, 7495095 - 7495004
Alignment:
Q  597 tgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgt 688  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||   |||||| ||||||||||||||    
T  7495095 tgtgttgtgaaaattcaatggagatgtacatgattcaatttaagatatgaatcactataattgttttttatttaacctattaaaaattatgt 7495004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 450 - 557
Target Start/End: Complemental strand, 7495281 - 7495174
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||| | ||||||||||||||| ||||||||||||||||||   |||||||||||||  || ||||||||| |||||||||||||||||| ||||||     
T  7495281 gagtatcgaaattaattattttaagttaaaatatatattttattggatacttataagatactcaacagatacacacaaatacttataagatagttcacag 7495182  T
Q  550 agacgtat 557  Q
    ||| ||||    
T  7495181 agatgtat 7495174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 458 - 662
Target Start/End: Original strand, 8485841 - 8486037
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    ||||||| ||||||||||| ||| | |||||||||  ||||||||||||||  || | |||||||     |||||||||||| |||||||||| ||||||    
T  8485841 gaattaaatattttaattttaaaaaaatattttattgaatacttataagatactccatagatacactatgatacttataagacacttcacatatacgtat 8485940  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    ||| ||| ||        | || ||||||||| ||||   ||||||||||| |||| || |||||||||||||||||||| ||||||| ||||||| |||    
T  8485941 cctagaaaaa-------ataaagggtaaaaaattgagatagtgttgtgaaa-ttcagtgtagatgtatatgattcaattttagatatgcatcagtagaat 8486032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 451 - 508
Target Start/End: Complemental strand, 17533622 - 17533565
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagat 508  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  17533622 agtatcggaattaattattttaatttaaaatatatattttatcggatacttataagat 17533565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 711 - 819
Target Start/End: Complemental strand, 26546095 - 26545988
Alignment:
Q  711 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 810  Q
    |||| ||||||||||||||||||||  |||||||| ||||| ||||||||||||| |||||  | ||||||||   |||||||||| |||||| | ||||    
T  26546095 gagaaaggagattcaatcaatcaattttaaacaaaatttgtcttgagttctttta-tgatgtttctgttgatatcctaacatatgattgaaaacataata 26545997  T
Q  811 tgatttata 819  Q
    |||||||||    
T  26545996 tgatttata 26545988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 451 - 819
Target Start/End: Complemental strand, 12312254 - 12311897
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| |||||||||||||||||||| ||| | ||| |||||| ||||||||||||||  || | || |||| |   ||||||||||||||||||| | |    
T  12312254 agtatcggaattaattattttaattttaaa-aaataatttatccaatacttataagatactccatagttacacaatgatacttataagatacttcaaaga 12312156  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagt-gaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
     | ||||||| ||| ||        |||| ||||| |||||  || |  ||||||||||| | | |||| |||||||  ||||||||| ||||||| |||    
T  12312155 tatgtatcctagaaaaa-------atgaagggtaagaaagtaaagacaatgttgtgaaaaataagtggaaatgtatacaattcaattttagatatgcatc 12312063  T
Q  650 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 749  Q
    | || |||||||| ||||| ||||| ||  |||||||  ||   |||||||||   || |||||| |||| ||||||| |||||| | ||||||||  ||    
T  12312062 aatagaattgtttctcgatcaaccactt-taaattatagtt---gtggatgaagttaacgagagagaggatattcaattaatcaacattaaacaaaactt 12311967  T
Q  750 gtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 819  Q
    || ||||||||||||  |||||| | | ||||||    |||||||||||| ||||| |||||||||||||    
T  12311966 gtgttgagttcttttgatgatgcttctattgatatcccaacatatgaatggaaataaaatatgatttata 12311897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 450 - 502
Target Start/End: Original strand, 1929073 - 1929125
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatactta 502  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||    
T  1929073 gagtatcggaattaattattttaatttaaaatatatattttatcggatactta 1929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 617 - 765
Target Start/End: Complemental strand, 2988200 - 2988053
Alignment:
Q  617 gagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagata 716  Q
    ||||||||||||||||||||| ||||||| |||| || |||||||| ||||| ||||| || |||||||| ||||| ||||| ||| | || |||||| |    
T  2988200 gagatgtatatgattcaattttagatatgcatcactaaaattgtttctcgatgaaccactt-aaaattatattttttgtggaagaaggtaacgagagaga 2988102  T
Q  717 ggagattcaatcaatcaatagtaaacaaactttgtattgagttctttta 765  Q
    |  |||||| | |||||||| || | ||  | ||| |||||||||||||    
T  2988101 gctgattcagttaatcaatattagataatatatgtgttgagttctttta 2988053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 603 - 803
Target Start/End: Complemental strand, 12283807 - 12283608
Alignment:
Q  603 gtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaa 702  Q
    ||||||||||| |||  |||||||  ||||| | | ||||||| ||||||| |||||||| | ||| ||||| || ||| ||||  |||| |||||||||    
T  12283807 gtgaaaattcagtgggaatgtatacaattcagtattagatatgcatcagtagaattgtttctggatgaaccactttaaa-ttatactttttgtggatgaa 12283709  T
Q  703 agcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaa 802  Q
       || |||||| |||||||||||| |||||| | ||| |||| ||||| |||| |||||||| |||||| | | ||||||    |||||||||||||||    
T  12283708 gttaacgagagagaggagattcaattaatcaacattaatcaaaatttgtgttgaattcttttaatgatgcttctattgatatcccaacatatgaatgaaa 12283609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 791 - 892
Target Start/End: Complemental strand, 17533381 - 17533274
Alignment:
Q  791 atatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttct--gtaaatgatgacttttataattat 884  Q
    |||||||||||||||||||||||||||||  |||||||    |||| |||||||||| |||||||||||||| |   |||||  |||||||||| | |||    
T  17533381 atatgaatgaaaatagaatatgatttatacgaaaactttatattttttattttgatcacatgtattattttttttattaaattgtgacttttatgaatat 17533282  T
Q  885 atagtatt 892  Q
    ||||||||    
T  17533281 atagtatt 17533274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1116 - 1255
Target Start/End: Original strand, 22000498 - 22000636
Alignment:
Q  1116 tgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatt 1215  Q
    |||||||||| |  |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |    
T  22000498 tgaaaagaaatccgaagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact 22000596  T
Q  1216 tgtggtaacaaattcatagaagccaacccattcatctctg 1255  Q
    ||||||| | ||| |||||||||||| |||||||||||||    
T  22000597 tgtggtagctaatgcatagaagccaatccattcatctctg 22000636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 576 - 681
Target Start/End: Complemental strand, 32340388 - 32340284
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| |||||||||||||| |  |||||| |||||||| |  |||||||||| ||||||||| | ||||| |||| || |||||||||||||| |||||     
T  32340388 tgaagggtaaaaaagtgagacaatgttgt-aaaattcagtaaagatgtatataattcaatttcatatatgcatcaatagaattgtttttcgatgaaccat 32340290  T
Q  676 ttaaaa 681  Q
    ||||||    
T  32340289 ttaaaa 32340284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 459 - 548
Target Start/End: Original strand, 16109785 - 16109876
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatac--ttataagatacttcaca 548  Q
    ||||||||||||||||||||||||||||| | |||| ||| ||||| |||  ||||| |||||||| | ||||   ||||||||||||||||    
T  16109785 aattaattattttaatttaaaatatatatgtaatcagatatttataggatactcgactgatacaaaaagatacatatataagatacttcaca 16109876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 688150 - 688087
Alignment:
Q  618 agatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||||| ||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||    
T  688150 agatgtatattattcaattttagatatgcatcaatataattgtttctcgatgaaccacttaaaa 688087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 829 - 892
Target Start/End: Original strand, 1929155 - 1929217
Alignment:
Q  829 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    ||||||||||||||  |||||||||||||| |||||||   |||||||||||||||||||||||    
T  1929155 ttttatattttgattacatgtattattttt-tgtaaattgcgacttttataattatatagtatt 1929217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 617 - 681
Target Start/End: Original strand, 30928364 - 30928428
Alignment:
Q  617 gagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||||||||||| | ||||| | |||||||||||||| | ||| ||||| ||||||    
T  30928364 gagatgtatatgattcaattttatatatgcaccagtataattgtttcttgatgaaccacttaaaa 30928428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 582 - 681
Target Start/End: Original strand, 10229461 - 10229560
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||| |  |||||  || |||| || ||||||||||||||||||||  ||||||| || | || |||||||||| ||| ||||| ||||||    
T  10229461 gtaaaaaagtgagacaatgttgcaaacattcgatagagatgtatatgattcaattatagatatgcataactagaattgttttttgatgaaccacttaaaa 10229560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-111; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 450 - 892
Target Start/End: Original strand, 31183338 - 31183775
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| ||| |||||||||||||||||   |     
T  31183338 gagtatcggaattatttattttaatttaaaatatatattttatcagatacttataagatactcgacagatacacacatatacttataagatactttctag 31183437  T
Q  550 agacgtatcct-ggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaat 648  Q
    ||||||||||| |||| ||        |||| ||||||||| |||| ||    ||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  31183438 agacgtatcctaggaaaaa----aaaatgaagggtaaaaaaatgagact----tgtgaaaattcaatggatatgtatataattcaatttgagatatgaat 31183529  T
Q  649 cagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactt 748  Q
    || |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||  ||||| |||| |||||||||||||||| |||||||||||    
T  31183530 cactataattgcttttcgattaaccaattaaaaattatgtttttggtg-atgaaagtaacaagagagaggaaattcaatcaatcaatattaaacaaactt 31183628  T
Q  749 tgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcg 844  Q
    ||| |||||||||| ||||||| ||||||||||||   ||||||||||| |||||||||||||||||||||| |||||||    |||| |||||||||      
T  31183629 tgttttgagttcttctattgatacatttgttgatatcctaacatatgaaagaaaatagaatatgatttatatgaaaactttacattttttattttgatta 31183728  T
Q  845 catgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||    
T  31183729 catgtattattttt-tgtaaatggtgacttttatgattatatagtatt 31183775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 450 - 889
Target Start/End: Original strand, 29488143 - 29488569
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |           ||| ||||| ||||||||||||||||||||||||      
T  29488143 gagtattggaattaattattttaatttaaaatacatattttatcatatactca-----------acaaatacacacaaatacttataagatacttcactg 29488231  T
Q  550 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
    | ||||||||||||| ||        |||| ||  |||||||||| || ||||||||||||| | ||||||||||||||||| | ||||||||||| |||    
T  29488232 atacgtatcctggaaaaa-------atgaagggggaaaaagtgagactttgttgtgaaaatttagtggagatgtatatgattaagtttaagatatgtatc 29488324  T
Q  650 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 749  Q
    | | ||||||| ||| ||||||||||||||||||||||||||| | ||||||||| || ||| ||  |||||||||||||||||| | ||||||||||||    
T  29488325 attgtaattgtattttgattaaccaattaaaaattatgtttttagaggatgaaagtaacgagtgagtggagattcaatcaatcaacattaaacaaacttt 29488424  T
Q  750 gtattgagttctttt--attgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatc 843  Q
    || ||||||||||||  |||||||||||||||||||   ||||||||||||||||||| |||||||||||||  |||||||    |||| ||||||||||    
T  29488425 gttttgagttctttttaattgatgcatttgttgatatcttaacatatgaatgaaaataaaatatgatttatacgaaaactttatattttttattttgatc 29488524  T
Q  844 gcatgtattatttttctgtaaatgatgacttttataattatatagt 889  Q
     |||| ||||||||| | |||||  |||||||||| ||| ||||||    
T  29488525 acatgcattattttt-tctaaatcgtgacttttatcattttatagt 29488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 372 - 722
Target Start/End: Complemental strand, 22791399 - 22791058
Alignment:
Q  372 ccggatactccataatagaaacgtacccgtatcatatacatattagataccgatactctacggatactcacatccatagagtattggaattaattatttt 471  Q
    |||||||||||| ||| || ||||||||||||||||||  |||  ||||| |||||||   ||||||  ||  ||| ||||||| | |||||||||||||    
T  22791399 ccggatactccaaaatggagacgtacccgtatcatatatgtatccgatactgatactccgtggatacgtac--ccacagagtatcgaaattaattatttt 22791302  T
Q  472 aatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatcctggaagaagnnn 571  Q
    |||||||||| |||||||||||  |||||||||||||  |||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||| ||        
T  22791301 aatttaaaatgtatattttatcggatacttataagatactcgacaaatacacacaaatacttataagttacttcacaaagacgtatcctggaaaaa---- 22791206  T
Q  572 nnnntgaatggtaaaaaag-tgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgatta 670  Q
        ||||  ||||||||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||| ||    
T  22791205 --aatgaagtgtaaaaaaaatgagactgtgttgtgaaaattcaatggatatgtatatgattcaatttaagatatgaatcactacaattg-ttttcga-ta 22791110  T
Q  671 accaattaaaaattatgtttttggtggatgaaagcaaagagagataggagat 722  Q
    |||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  22791109 accaattaaaaattatgtttttggtggatgaaagtaacgagagagaggagat 22791058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 3e-70
Query Start/End: Original strand, 450 - 714
Target Start/End: Complemental strand, 46594463 - 46594202
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||||||||||||||||||||||||||||||||||||||| |  ||| |||||||||  |||||||||| | ||| |||||||||||||||||||||     
T  46594463 gagtattggaattaattattttaatttaaaatatatattttaccggatatttataagatactcgacagatatacacatatacttataagatacttcacag 46594364  T
Q  550 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
    |||| ||||||| |||||        ||||   ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46594363 agacatatcctg-aagaa-aaaaaaatgaagtataaaaaaatgagactatgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 46594266  T
Q  650 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagaga 714  Q
    | |||||||||||||||| | |||||||||||||||||||||||||||||||||| || ||||||    
T  46594265 actataattgtttttcga-tgaccaattaaaaattatgtttttggtggatgaaagtaacgagaga 46594202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 1e-66
Query Start/End: Original strand, 445 - 734
Target Start/End: Complemental strand, 4073786 - 4073506
Alignment:
Q  445 ccatagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatactt 544  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||  || ||||| ||||| |||||    
T  4073786 ccatggagtatcggaattaattattttaatttaaaatatatattttatcgaatacttataagatactcgacaaatacacgcagatactaataaggtactt 4073687  T
Q  545 cacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatat 644  Q
    |||||| |||||||||  || ||        |||| |||||||| ||||   ||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  4073686 cacataaacgtatcctaaaaaaa--------tgaaaggtaaaaa-gtgaaattgttttgtgaaaattcaatggcgatgtgtatgattcaatttaagatat 4073596  T
Q  645 gaatcagtataattgtttttcgattaaccaatta-aaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 734  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||  ||||||||||||||||||    
T  4073595 gaatcactataattgtttttcgattaaccaattaaaaaattatgtttttggtggatgaaagtagcgagaga-gggagattcaatcaatcaa 4073506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 584 - 858
Target Start/End: Original strand, 2136805 - 2137083
Alignment:
Q  584 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 683  Q
    |||||||||||  ||||||||||||||||||||||  | ||||| ||||||||||| ||||||||||  | ||||||||| |||||||||||||||||||    
T  2136805 aaaaaagtgagtatgtgttgtgaaaattcaatggaagtatatataattcaatttaatatatgaatcaccacaattgttttacgattaaccaattaaaaat 2136904  T
Q  684 tatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgata 783  Q
    |||||||||| | || ||||| || || | |   || |||||||||||||| | |||| ||||||||| |||| |||||||||| |||||||||||||||    
T  2136905 tatgtttttgattgacgaaagtaacgaaataggagatattcaatcaatcaacattaaataaactttgttttgaattcttttattaatgcatttgttgata 2137004  T
Q  784 ctataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 858  Q
       |||||||||||||||||||||||||||||| ||  |||||||    |||| | |||||||| ||||||||||||||    
T  2137005 tcctaacatatgaatgaaaatagaatatgatttctacgaaaactttagattttttgttttgatcacatgtattattttt 2137083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 459 - 783
Target Start/End: Complemental strand, 50461435 - 50461121
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||| ||  |||||| |||||  ||||||||||||  |||||||||  | |||||||    
T  50461435 aattaattattttaattttaaaaatatattttatcgaatacttataaaatactcgacatataca--caaatacttatataatacttcacgcatacgtatc 50461338  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 658  Q
    ||  || ||        |||| |||||| |||||||  | | | ||||||||||||| |||||||||||| ||||||||||||||||||||  |||||||    
T  50461337 ctaaaaaaaaaaaaaaatgaagggtaaagaagtgagattatatggtgaaaattcaatagagatgtatatggttcaatttaagatatgaatcgatataatt 50461238  T
Q  659 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagt 758  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||| || || ||  || | ||||||||||| || | |        ||||| ||||||    
T  50461237 gtttttcgattaaccaaataaaaattatgttttttgtggatgaaagtaacgaaag--agaaaattcaatcaattaacatt------tttttgttttgagt 50461146  T
Q  759 tcttttattgatgcatttgttgata 783  Q
    |||||||||||||||||||||||||    
T  50461145 tcttttattgatgcatttgttgata 50461121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 584 - 714
Target Start/End: Original strand, 50709546 - 50709675
Alignment:
Q  584 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 683  Q
    |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  50709546 aaaaaaatgagacagtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcattataattgtttttcga-taaccaattaaaaat 50709644  T
Q  684 tatgtttttggtggatgaaagcaaagagaga 714  Q
    ||||||||||||||||||||| || ||||||    
T  50709645 tatgtttttggtggatgaaagtaacgagaga 50709675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 652 - 783
Target Start/End: Original strand, 51273129 - 51273262
Alignment:
Q  652 tataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaatagtaaacaaacttt 749  Q
    ||||||| |||||||||| || |||||||||||||||||||| | |||||||||||  ||||||| ||||||||||||||||||||| |||||||| |||    
T  51273129 tataattatttttcgattgactaattaaaaattatgtttttgatagatgaaagcaatgagagagagaggagattcaatcaatcaatattaaacaaatttt 51273228  T
Q  750 gtattgagttcttttattgatgcatttgttgata 783  Q
    || ||||||||||||||||||||| |||||||||    
T  51273229 gttttgagttcttttattgatgcagttgttgata 51273262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 450 - 650
Target Start/End: Complemental strand, 17936433 - 17936244
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||   |||||||||||| ||| |||||| |||||| |||||||     
T  17936433 gagtatcggaattaattattttaatttaaaatatatattttattggatacttataaga--ctcgacagatacacacatatacttgtaagattcttcacag 17936336  T
Q  550 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
    | ||||||||||||| ||        ||||  |||||||| ||||  ||| ||||||||||||||||||||||||||||| ||||| || ||||||||||    
T  17936335 acacgtatcctggaaaaa-------atgaagtgtaaaaaa-tgagattgttttgtgaaaattcaatggagatgtatatga-tcaatatatgatatgaatc 17936245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 451 - 662
Target Start/End: Original strand, 14286910 - 14287115
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| |||||||||||||||||||||||| |||||| |||||  ||||||||| |||  || | ||||||| |   |||||||||||||||||| ||||    
T  14286910 agtatcggaattaattattttaatttaaaaaatatatattatcggatacttatatgatactccatagatacacaatgatacttataagatacttcgcata 14287009  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 650  Q
     | ||||||| ||| |||       |||| || ||||||||||| |  |||||| ||||||||   |||||||||||||| |||||| ||||||| || |    
T  14287010 tatgtatcctagaaaaag------atgaagggaaaaaaagtgagacaatgttgtaaaaattcaggagagatgtatatgatgcaattttagatatgcatta 14287103  T
Q  651 gtataattgttt 662  Q
    ||| ||||||||    
T  14287104 gtagaattgttt 14287115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 787 - 892
Target Start/End: Complemental strand, 22791053 - 22790945
Alignment:
Q  787 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 882  Q
    ||||||||||||||||||| |||||||||||||  |||||||    |||| |||||||||| |||||||||||||| |||||||  |||||||||| |||    
T  22791053 taacatatgaatgaaaataaaatatgatttatacgaaaactttaagttttttattttgatcacatgtattattttt-tgtaaattgtgacttttatgatt 22790955  T
Q  883 atatagtatt 892  Q
    ||||||||||    
T  22790954 atatagtatt 22790945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 50709454 - 50709505
Alignment:
Q  457 ggaattaattattttaatttaaaatatatattttatcaaatacttataagat 508  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50709454 ggaattaattattttaatttaaaatatatattttatcagatacttataagat 50709505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 459 - 558
Target Start/End: Original strand, 50727149 - 50727243
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||      |||||||||| | |   |||||||||||||||||||||||||||||||    
T  50727149 aattaattattttaatttaaaatatacattttatcatatacttata-----ctcgacagatatacattgatacttataagatacttcacatagacgtatc 50727243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 458 - 681
Target Start/End: Complemental strand, 4973306 - 4973087
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    ||||||||||||| ||||| ||| | ||||||||||| ||||||||| |||  || ||| ||||| | | ||||||||||||||||| ||||| | ||||    
T  4973306 gaattaattatttaaattttaaaaaaatattttatcagatacttatatgatactccacaaatacacaaagatacttataagatactttacatatatgtat 4973207  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    ||| ||| ||        |||| || || |||||||| |  | |||| |||||||| ||||||| ||||||||||||||| ||||||  ||| ||| |||    
T  4973206 cctagaaaaa----aaaatgaagggcaataaagtgagacaatattgtaaaaattcagtggagatatatatgattcaattttagatatacatctgtagaat 4973111  T
Q  658 tgtttttcgattaaccaattaaaa 681  Q
    ||||| ||||| ||| | ||||||    
T  4973110 tgtttctcgatgaacaacttaaaa 4973087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 576 - 662
Target Start/End: Original strand, 16122800 - 16122885
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 662  Q
    |||| |||||||||||||| |  |||||||||| |||| |||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  16122800 tgaagggtaaaaaagtgagacaatgttgtgaaa-ttcattggaaatgtatatgattcaattttagatatgcatcagtataattgttt 16122885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 582 - 681
Target Start/End: Original strand, 13558498 - 13558597
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||| |  |||||| || ||||||| | ||||||||||||||||||| ||||||| |||| || |||||||| ||||| ||||| ||||||    
T  13558498 gtaaaaaagtgagacaatgttgtaaacattcaatagggatgtatatgattcaattttagatatgcatcactaaaattgtttctcgatgaaccacttaaaa 13558597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 634 - 701
Target Start/End: Original strand, 30193412 - 30193478
Alignment:
Q  634 atttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatga 701  Q
    |||||| || ||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30193412 atttaaaatttgaatcgctataattgtttttcgat-aaccaattaaaaattatgtttttggtggatga 30193478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 615 - 681
Target Start/End: Complemental strand, 38682995 - 38682929
Alignment:
Q  615 tggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||||| ||||||||||| ||||||    
T  38682995 tggagatgtatatgattcaattttagatatgcatcaatagaattgtttctcgattaaccacttaaaa 38682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 601 - 653
Target Start/End: Complemental strand, 30902449 - 30902397
Alignment:
Q  601 ttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagta 653  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  30902449 ttgtgaaaattcaatggagatgtatatgattcaattttaaatatgcatcagta 30902397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 599 - 658
Target Start/End: Original strand, 270965 - 271024
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 658  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||  ||||||||||||    
T  270965 tgttgtgaaaattcgatggagatatatatgattcaattttagatatacatcagtataatt 271024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 599 - 653
Target Start/End: Original strand, 781883 - 781937
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagta 653  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||| |||||    
T  781883 tgttgtgaaaattcaatgaatatgtatatgattcaattttagatatgaaacagta 781937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 457 - 681
Target Start/End: Complemental strand, 31513843 - 31513625
Alignment:
Q  457 ggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgta 556  Q
    ||||||||||||||||||||  |||| ||||||||||  ||||||||  |||  || ||||||||| |   |||||| |||||||||||||| | |||||    
T  31513843 ggaattaattattttaatttttaataaatattttatcggatacttatgtgatactccacagatacacaaggatacttctaagatacttcacagacacgta 31513744  T
Q  557 tcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataa 656  Q
    |||| ||| |||       |||   ||||||||||||| |  |||||| |||||| | |  || ||||||||| ||||||| ||||||| |||| || ||    
T  31513743 tcctagaaaaag------atgaggagtaaaaaagtgagacaatgttgtaaaaatttattataggtgtatatgactcaattttagatatgcatcaatagaa 31513650  T
Q  657 ttgtttttcgattaaccaattaaaa 681  Q
    |||||| ||||| || || ||||||    
T  31513649 ttgtttctcgatgaaacagttaaaa 31513625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 451 - 681
Target Start/End: Original strand, 40693821 - 40694046
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||||||||||||||||||||||||  |||| ||||||||||  |||| |||  |||  || || |||||| |  ||||||| |||||||||||||| |    
T  40693821 agtattggaattaattattttaatttttaataaatattttatcggatacatatgtgatactccacggatacacaagaatacttctaagatacttcacaga 40693920  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatg-gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
     |||||| || ||| ||        |||| | ||||||||||||| |  |||||| |||||||| |   ||||||||||| ||||| | ||||||| |||    
T  40693921 aacgtattctagaaaaa------tatgaaggagtaaaaaagtgagacaatgttgtaaaaattcattattgatgtatatgactcaatattagatatgcatc 40694014  T
Q  650 agtataattgtttttcgattaaccaattaaaa 681  Q
    | || |||||||||||||| || || ||||||    
T  40694015 aatagaattgtttttcgatgaaacacttaaaa 40694046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 787 - 829
Target Start/End: Original strand, 50709686 - 50709728
Alignment:
Q  787 taacatatgaatgaaaatagaatatgatttatataaaaacttt 829  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  50709686 taacatatgaatgaaaatagaatatgatttatatgaaaacttt 50709728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 451 - 681
Target Start/End: Original strand, 17116139 - 17116365
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| ||||||||||||||||||||  | || ||||||||||  |||||||   |||  || ||||||||| |  ||||||| ||||||||||||||||    
T  17116139 agtatcggaattaattattttaatttttattaaatattttatcggatacttaggtgatactccacagatacacaagaatacttctaagatacttcacata 17116238  T
Q  551 gacg--tatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaat 648  Q
     |||  |||||| ||| |||       ||||  |||||||||||||    |||||| |||||||  |  |||||||||||| ||||||| ||||||| ||    
T  17116239 cacgtatatcctagaaaaag------atgaagagtaaaaaagtgagataatgttgtaaaaattctttatagatgtatatgactcaattttagatatgcat 17116332  T
Q  649 cagtataattgtttttcgattaaccaattaaaa 681  Q
    || || |||| ||||||||| || || ||||||    
T  17116333 caatagaattatttttcgatgaaacacttaaaa 17116365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 618 - 771
Target Start/End: Original strand, 4966736 - 4966887
Alignment:
Q  618 agatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagatag 717  Q
    |||| ||||||||||||||| ||||||  ||| ||| |||||||| ||||| ||| | ||||||  |||  || | ||||||||||| || |||||| ||    
T  4966736 agatatatatgattcaattttagatatacatctgtagaattgtttctcgatgaacaacttaaaa--tatacttcttgtggatgaaagtaacgagagagag 4966833  T
Q  718 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatg 771  Q
      |||||| | |||||| | |||| ||| ||||| ||||||||||||| |||||    
T  4966834 atgattcagttaatcaacattaaataaaatttgtgttgagttcttttaatgatg 4966887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 584 - 645
Target Start/End: Original strand, 13643833 - 13643894
Alignment:
Q  584 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatg 645  Q
    ||||||||||| |   ||||| |||||||||| ||||||||||||||||||||| |||||||    
T  13643833 aaaaaagtgagacaacgttgtaaaaattcaatagagatgtatatgattcaattttagatatg 13643894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 2136732 - 2136779
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataa 505  Q
    |||||||||||||||||||||   ||||||||||||| ||||||||||    
T  2136732 gaattaattattttaatttaaccgatatattttatcagatacttataa 2136779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 791 - 858
Target Start/End: Original strand, 16123013 - 16123084
Alignment:
Q  791 atatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 858  Q
    ||||||||||||||| |||||| ||||||  |||||||    |||| ||||||||||| |||||||||||||    
T  16123013 atatgaatgaaaatataatatggtttataagaaaactttacattttttattttgatcgaatgtattattttt 16123084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 582 - 668
Target Start/End: Original strand, 50726668 - 50726754
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 668  Q
    ||||||||||||| |  |||||| |||||||| |  |||||||||||| ||||||| |||||||  ||| || |||||||| |||||    
T  50726668 gtaaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgactcaattttagatatgcgtcaatagaattgtttctcgat 50726754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 10443426 - 10443478
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttata 504  Q
    ||||| |||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  10443426 agtatcggaattaattattttaattttaaa-aaatattttatctaatacttata 10443478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-105; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 450 - 892
Target Start/End: Original strand, 26352483 - 26352920
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||  |||| | ||||| ||| ||||||||||||||||||||||    
T  26352483 gagtatcggaattaattattttaatttaaaatatatattttattggatacttataagatactcgataaatacacacatatacttataagatacttcacat 26352582  T
Q  550 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
    | |||||||||  || |         |||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  26352583 aaacgtatcctaaaaaa---------tgaaaggtaaaaaagtgagtctgttttgtgaaaattcaatggagatgtgtatgattcaatttaagatatgagtc 26352673  T
Q  650 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 749  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||  |||||||||||||||||| | |||| |||| |     
T  26352674 actataattgtttctcgattaaccaattaaaaattatgtttttggtggatgaaagtaatgaaagaggggagattcaatcaatcaacattaaataaacgta 26352773  T
Q  750 gtattgagttcttttattgatgcatttgttgatactataaca-tatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcg 844  Q
    || |||||||||||||  |||  |||||||||||   ||||| |||||||||||||| |||||||||||||  |||||||    |||| |||||||||||    
T  26352774 gttttgagttcttttaccgataaatttgttgatatcctaacattatgaatgaaaataaaatatgatttatacgaaaactttacattttttattttgatcg 26352873  T
Q  845 catgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    | |||||||||||| ||||||| ||||||||||| ||| |||||||||    
T  26352874 cttgtattattttt-tgtaaattatgacttttatgattttatagtatt 26352920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 459 - 818
Target Start/End: Original strand, 45388644 - 45388997
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    ||||||||||||||||||||||||||||||||||   ||||||| |||||  ||||||||||||||||||||||||||||||||||| || |||| ||||    
T  45388644 aattaattattttaatttaaaatatatattttattggatacttagaagatactcgacagatacaaacaaatacttataagatacttcgcaaagacatatc 45388743  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaag-tgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    ||| || ||        |||| |||||||||  |||| ||||||||||||||||||||||||||  || |||||||||||||||||| ||||| ||||||    
T  45388744 ctgaaaaaa-------atgaagggtaaaaaaaatgagactgtgttgtgaaaattcaatggagattaatttgattcaatttaagatataaatcactataat 45388836  T
Q  658 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgag 757  Q
    | ||||||||||||| |||||||||||||||||||| || ||||||| || |||||| | ||||||||||||||||| | |||||| ||||||| || ||    
T  45388837 tatttttcgattaactaattaaaaattatgtttttgttgaatgaaagtaacgagagagatgagattcaatcaatcaacattaaacatactttgttttaag 45388936  T
Q  758 ttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 818  Q
    |||||||||||||||||||||| |||   ||||||||||||||||||| ||||||||||||    
T  45388937 ttcttttattgatgcatttgttaatatcctaacatatgaatgaaaatataatatgatttat 45388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 7e-83
Query Start/End: Original strand, 528 - 889
Target Start/End: Original strand, 36925503 - 36925856
Alignment:
Q  528 atacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatat 627  Q
    |||||||||||||||||||   |||||||||||||| |||        |||| ||||||||  ||||  |||||||| ||||||    ||||||||||||    
T  36925503 atacttataagatacttcattgagacgtatcctggaggaa----taaatgaagggtaaaaacatgagattgtgttgtaaaaatt----ggagatgtatat 36925594  T
Q  628 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaat 727  Q
    || |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||    
T  36925595 gagtcaatttaagatatgaatgactataattgtttttcgattaaccaattaaaaattatgtttttggtagatgaaagc-gagagagagaggagattcaat 36925693  T
Q  728 caatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaact 827  Q
    ||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| ||  ||||||    
T  36925694 caatcaacattaaacaaactttgttttgagttcttttattgatgtatttgttgata-tctaacatgtgaatgaaaatagaatatgatttttacgaaaact 36925792  T
Q  828 tt---tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagt 889  Q
    ||   ||| |||||||||| |||||||||||||| |||||||  ||||||||||  |||||||||    
T  36925793 ttacatttttattttgatcacatgtattattttt-tgtaaattgtgacttttatggttatatagt 36925856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 585 - 892
Target Start/End: Original strand, 3353132 - 3353439
Alignment:
Q  585 aaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatt 684  Q
    |||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  3353132 aaaaagtgagactatgttgtgaaaatttaatggaaatgtatatgattcaatttaagatatgaatcattataattgtttttcgattaaccagttaaaaatt 3353231  T
Q  685 atgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatac 784  Q
    ||||||||||| |||||||| || ||| || | ||||||| ||||||||| | |||||||||||||| ||||||||||||||| || ||||||||||||     
T  3353232 atgtttttggtagatgaaagtaacgagggagaagagattcgatcaatcaacattaaacaaactttgttttgagttcttttattcatacatttgttgatat 3353331  T
Q  785 tataacatatgaatgaaaatagaatatgatttatataaaaactt---ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataat 881  Q
      |||||||||||||||||| | ||||||||||||  |||||||     || |||||||||  ||||| |||||||| |||||||   ||||||||| ||    
T  3353332 cctaacatatgaatgaaaattggatatgatttatacgaaaacttcacaattttattttgat--catgtgttattttt-tgtaaattgggacttttatgat 3353428  T
Q  882 tatatagtatt 892  Q
    |||||||||||    
T  3353429 tatatagtatt 3353439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 6e-59
Query Start/End: Original strand, 458 - 722
Target Start/End: Complemental strand, 43355967 - 43355706
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||  | || ||||||| ||| || |||||||||||||||| | ||||||||    
T  43355967 gaattaattattttaatttaaaatatatattttattggatacttataagatacttgagagatacacacatatgcttataagatacttcatagagacgtat 43355868  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    |||| || ||        || |    |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  43355867 cctgaaaaaaaaatgaagtgtaaa--aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaagttaagatatgaatcactataat 43355770  T
Q  658 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagat 722  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||| || |||||| |||||||    
T  43355769 tgtttttcta-taacgaattaaaaattatgtttttggtggatgaaagtaatgagagagaggagat 43355706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 582 - 779
Target Start/End: Original strand, 18858483 - 18858680
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||   |||| |||| |||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |    
T  18858483 gtaaaaaagtgaatatgtgatgtgtaaattcaatgaagatgtatatgattcaatttatgatatgaatgaatataattgtttttcgattaaccaattaata 18858582  T
Q  682 attatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgtt 779  Q
    |||||||||||||| |||||||| || |||||| | ||||||||||||||||  | |||||||||||||| || | ||||||||||||||||||||||    
T  18858583 attatgtttttggtagatgaaagtaacgagagagaagagattcaatcaatcagcattaaacaaactttgttttaaattcttttattgatgcatttgtt 18858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 466 - 806
Target Start/End: Complemental strand, 36526170 - 36525847
Alignment:
Q  466 tattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatcctggaag 565  Q
    ||||||||||||||| ||||||||||||| ||| ||||| |||  |||||||||||  ||||||||||| ||||||||||| ||| | ||||| |||||     
T  36526170 tattttaatttaaaaaatatattttatcagatatttataggatattcgacagatacccacaaatacttagaagatacttcaaatatatgtatcttggaaa 36526071  T
Q  566 aagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttc 665  Q
    |         |||| ||||||||||||||  |||||||||| ||||||||||||||||| ||||||||||             || ||||| ||||||||    
T  36526070 a------caatgaagggtaaaaaagtgagattgtgttgtgagaattcaatggagatgtacatgattcaat-------------caatataactgtttttc 36525990  T
Q  666 gattaaccaattaaaaattatgtttttggtggatgaaagcaaaga--gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttt 763  Q
    |||||| |||||| |||||||||||||| ||||||| || || ||  |||| |||  |||||||||||||||| |||||||| ||||| ||||||| |||    
T  36525989 gattaatcaattacaaattatgtttttgttggatgagagtaacgacagagacaggtaattcaatcaatcaatattaaacaaattttgttttgagtttttt 36525890  T
Q  764 tattgatgcatttgttgatactataacatatgaatgaaaatag 806  Q
    ||||||||||||||||||     ||| ||||||||||||||||    
T  36525889 tattgatgcatttgttgacgtcctaatatatgaatgaaaatag 36525847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 576 - 828
Target Start/End: Original strand, 44986408 - 44986650
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||||| ||||||  |||| |||| ||||||||||||||||||  ||||||||||||||||      ||||| || ||||||||||||||||||||||||    
T  44986408 tgaatgataaaaagttgagactgtattgtgaaaattcaatgga--tgtatatgattcaatt------atgaaacaatataattgtttttcgattaaccaa 44986499  T
Q  676 ttaaaaattatgtttttggtggatgaaagcaaaga-gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcat 774  Q
     | ||||||||||||||  ||||| ||||  | || |||| ||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||    
T  44986500 ctgaaaattatgtttttcttggat-aaag--atgacgagaaaggagattcaatcaatcaacattaaacaaactttgttttgggttcttttattgatgcat 44986596  T
Q  775 ttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt 828  Q
    |||||||||   ||| |||| | |||||||| |||||||||||||  |||||||    
T  44986597 ttgttgatatcttaatatataagtgaaaatataatatgatttatactaaaactt 44986650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 599 - 726
Target Start/End: Complemental strand, 16496884 - 16496758
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtgga 698  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||| ||||| ||||| || |||| ||| ||||| |||||    
T  16496884 tgttgtgaaaattcaatgaagatgtatatgattcaattttagatgtgaatcagtaaaattgtttctcgatgaaccactt-aaaagtatattttttgtgga 16496786  T
Q  699 tgaaagcaaagagagataggagattcaa 726  Q
    |||| ||||  ||||| | |||||||||    
T  16496785 tgaatgcaataagagagatgagattcaa 16496758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 451 - 734
Target Start/End: Original strand, 36467100 - 36467374
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| |||||||||||||||||||||||| | ||||||||||  ||||||||| ||| ||| ||||||||| | | ||||||||||||||||||||| |    
T  36467100 agtatcggaattaattattttaatttaaaaaa-atattttatctgatacttataggataatccacagatacacaaagatacttataagatacttcacaga 36467198  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 650  Q
     | |||  || | ||| |       |||  ||||| |||||||| |  |||||| |||||||| | || |||||||||||||||||| ||||||| || |    
T  36467199 tatgtaaactag-agatg------atgacgggtaagaaagtgagacaatgttgtaaaaattcagttgaaatgtatatgattcaattttagatatgcataa 36467291  T
Q  651 gtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 734  Q
    ||| |||||||| ||||| ||||| || ||||||||| || | ||||||||| | || |||||| | | |||||||| ||||||    
T  36467292 gtaaaattgtttctcgatgaaccactt-aaaattatgattcttgtggatgaaggtaatgagagagatgtgattcaattaatcaa 36467374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 459 - 640
Target Start/End: Original strand, 30776576 - 30776750
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    |||||||||||||||||| ||| |||||||||| | | |||||||| |||   ||| ||||||| ||| |||||||||||||||||||||   | |||||    
T  30776576 aattaattattttaatttcaaaaatatattttagcgattacttataggatatccgatagatacacacatatacttataagatacttcacagttaagtatc 30776675  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaag 640  Q
    || | ||||        |||| |||||||||||||| ||||||| | |||||||||| |||||||||||||||||| |||||    
T  30776676 cttg-agaa------attgaagggtaaaaaagtgagactgtgttataaaaattcaatcgagatgtatatgattcaaattaag 30776750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 457 - 681
Target Start/End: Original strand, 7017729 - 7017950
Alignment:
Q  457 ggaattaattattttaatttaaaatatatattttatcaaatacttataagat---catcgacagatacaaacaaatacttataagatacttcacatagac 553  Q
    |||||||||||||| ||||| ||| | ||||||||||  ||||||||| |||   | || ||| ||||| | | ||| ||||||||||||||||||| |     
T  7017729 ggaattaattatttaaattttaaaaaaatattttatcggatacttatatgatactcctccacaaatacacaaagatatttataagatacttcacatatat 7017828  T
Q  554 gtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagta 653  Q
    || |||| ||| |||       |||| |||||||||||||| |  |||||| |||||||| | ||||||||||||||||||||| ||||||| ||  |||    
T  7017829 gtttcctagaaaaaga------tgaagggtaaaaaagtgagacaatgttgtaaaaattcagtagagatgtatatgattcaattttagatatgcatgggta 7017922  T
Q  654 taattgtttttcgattaaccaattaaaa 681  Q
     |||||||| ||||| ||||| ||||||    
T  7017923 gaattgtttctcgataaaccacttaaaa 7017950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 576 - 673
Target Start/End: Original strand, 41323899 - 41323996
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaacc 673  Q
    |||| |||||||||||||| |  |||||| |||||||| | ||||||||||||||||||||| ||||||| ||||||| |||||||| ||||| ||||    
T  41323899 tgaacggtaaaaaagtgagacaatgttgtaaaaattcagtagagatgtatatgattcaattttagatatgcatcagtaaaattgtttctcgatgaacc 41323996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 14749467 - 14749531
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagataca 522  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| |||||||||    
T  14749467 gaattaattattttaatttaaaatatatattttatcggatacttataagataatcaacagataca 14749531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 458 - 681
Target Start/End: Original strand, 35298334 - 35298551
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    ||||||||||||||||||||||| |  |||||| ||  ||||||||| |||  || ||||||||| | | ||| ||||||||||||||||||| ||||||    
T  35298334 gaattaattattttaatttaaaagaattatttt-tcggatacttatatgatactccacagatacacaaagatatttataagatacttcacatatacgtat 35298432  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
     || ||| ||        | || |||||||||||||| |  |||||| |||||||| | ||||||||||| ||||||||| ||| ||| |||| || |||    
T  35298433 tctagaaaaa-----agataaaaggtaaaaaagtgagacaatgttgtaaaaattcagtagagatgtatataattcaattttagaaatgcatcaatagaat 35298527  T
Q  658 tgtttttcgattaaccaattaaaa 681  Q
    | ||| ||||| ||||| ||||||    
T  35298528 tatttctcgatgaaccacttaaaa 35298551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 576 - 681
Target Start/End: Complemental strand, 37273022 - 37272917
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| ||||||||||| || |  |||||| |||||||| | ||||||||||||||||||||| ||| ||| |||| || |||||||||||||| |||||     
T  37273022 tgaaaggtaaaaaagtaagacaatgttgtaaaaattcagtagagatgtatatgattcaattttagacatgcatcaataaaattgtttttcgatgaaccac 37272923  T
Q  676 ttaaaa 681  Q
    ||||||    
T  37272922 ttaaaa 37272917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 604 - 825
Target Start/End: Original strand, 11457848 - 11458070
Alignment:
Q  604 tgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatt-atgtt--tttggtggatg 700  Q
    |||||||||||||||  |||||||||||||| || |||| | ||  ||||||||| ||||| ||| ||||| |||||  || || ||  ||| |||||||    
T  11457848 tgaaaattcaatggaagtgtatatgattcaactttagatctaaaatagtataattatttttggatgaaccacttaaatttttattttatttttgtggatg 11457947  T
Q  701 aaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatga 800  Q
    || | || |||||| |  ||||| ||| |||||| | || ||||| ||||| ||| ||| ||||| |||||| | ||||||||  |||| ||||||||||    
T  11457948 aaggtaatgagagaga--agatttaattaatcaacattagacaaaatttgtgttgcgttattttaatgatgcttatgttgatatcataatatatgaatga 11458045  T
Q  801 aaatagaatatgatttatataaaaa 825  Q
    ||||| ||||| |||||||| ||||    
T  11458046 aaatataatattatttatatgaaaa 11458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 443 - 508
Target Start/End: Original strand, 36925450 - 36925515
Alignment:
Q  443 atccatagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagat 508  Q
    ||||| |||||||  ||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  36925450 atccacagagtatcagaattaactattttaatttaaaatatatattttatcggatacttataagat 36925515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 829 - 892
Target Start/End: Original strand, 14749544 - 14749606
Alignment:
Q  829 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    |||| |||||||||| |||||||||||||| ||||||| | ||||||||| |||||||||||||    
T  14749544 ttttttattttgatcacatgtattattttt-tgtaaatcacgacttttatgattatatagtatt 14749606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 576 - 681
Target Start/End: Complemental strand, 11562836 - 11562733
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| |||||||||||||| |  ||||||  ||||||| | ||||| |||||||||||||||  |||||||||||  | |||||||| ||||| |||||     
T  11562836 tgaagggtaaaaaagtgagacaatgttgtagaaattcagtagagatatatatgattcaattttggatatgaatca--acaattgtttctcgataaaccac 11562739  T
Q  676 ttaaaa 681  Q
    ||||||    
T  11562738 ttaaaa 11562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 451 - 662
Target Start/End: Complemental strand, 38221845 - 38221640
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagat-catcgacagatacaaacaaatacttataagatacttcacat 549  Q
    ||||| |||||||||||||| |||||  || | |||||||| | |||||||||| ||| | ||| |||||||| |   ||| ||| ||||||||||||||    
T  38221845 agtatcggaattaattatttaaatttttaaaaaatattttaacgaatacttatacgatacttcg-cagatacacaaggatatttacaagatacttcacat 38221747  T
Q  550 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
    | | ||||||| ||| |||       ||||  |||||| |||||| |  |||||| || ||||||| |||||||||||||||||||||  |||||| |||    
T  38221746 atatgtatcctagaaaaaga------tgaagagtaaaagagtgagacaatgttgtaaacattcaatagagatgtatatgattcaattttggatatgcatc 38221653  T
Q  650 agtataattgttt 662  Q
    | || ||||||||    
T  38221652 actagaattgttt 38221640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 834 - 892
Target Start/End: Original strand, 45389019 - 45389076
Alignment:
Q  834 tattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    |||||||||| |||||||||||||| |||||||  |||||||||| |||||||||||||    
T  45389019 tattttgatcacatgtattattttt-tgtaaattgtgacttttatgattatatagtatt 45389076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 606 - 771
Target Start/End: Original strand, 30485631 - 30485795
Alignment:
Q  606 aaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagc 705  Q
    |||||||| | ||||||| | || |||||||| ||||||| |||| || |||||||| ||| | ||||| |||||  ||||  || | ||||||||| |     
T  30485631 aaaattcagtagagatgtgtgtggttcaattttagatatgcatcattagaattgtttctcggtgaaccacttaaat-ttatacttcttgtggatgaaggt 30485729  T
Q  706 aaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatg 771  Q
    || |||||| ||| |||||||| |||||| | || | ||| ||||| ||||||||||||| |||||    
T  30485730 aatgagagaaaggtgattcaattaatcaacattagataaagtttgtgttgagttcttttaatgatg 30485795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 18858366 - 18858417
Alignment:
Q  459 aattaattattttaatttaaa--atatatattttatcaaatacttataagat 508  Q
    |||||||||||||||||||||  ||||||||||||||  |||||||||||||    
T  18858366 aattaattattttaatttaaaatatatatattttatcggatacttataagat 18858417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 621 - 681
Target Start/End: Original strand, 40498676 - 40498736
Alignment:
Q  621 tgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||||||| ||||||| |||| || |||||||| ||||| ||||| ||||||    
T  40498676 tgtatatgattcaattttagatatgcatcactagaattgtttctcgatgaaccacttaaaa 40498736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 828 - 892
Target Start/End: Complemental strand, 43344752 - 43344689
Alignment:
Q  828 tttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    ||||| |||||||||| |||||||||||||| ||| |||  |||||||||| |||||||||||||    
T  43344752 tttttttattttgatcacatgtattattttt-tgtgaattgtgacttttatgattatatagtatt 43344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 582 - 637
Target Start/End: Original strand, 18561115 - 18561170
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaattt 637  Q
    ||||||||||||| |  |||| |||||||||| |||| ||||||||||||||||||    
T  18561115 gtaaaaaagtgagacaatgttttgaaaattcagtggaaatgtatatgattcaattt 18561170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 582 - 681
Target Start/End: Complemental strand, 42794880 - 42794781
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||| |  |||||| |||||||| |  |||||||| ||| ||||||| ||||||| |||| || |||||||| ||||| || || ||||||    
T  42794880 gtaaaaaagtgagacaatgttgtaaaaattcattatagatgtatgtgactcaattttagatatgcatcaatagaattgtttctcgatgaaacacttaaaa 42794781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 576 - 662
Target Start/End: Original strand, 2788913 - 2788999
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 662  Q
    |||||| |||||||||||| |  | |||||||| || |||||| |||||||| ||||||||| | ||||| || |||| ||||||||    
T  2788913 tgaatgttaaaaaagtgagacaatattgtgaaagtttaatggaaatgtatatcattcaattttaaatatgcattagtaaaattgttt 2788999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 38140639 - 38140681
Alignment:
Q  619 gatgtatatgattcaatttaagatatgaatcagtataattgtt 661  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||    
T  38140639 gatgtatatgattcaattttagatatgcatcaatataattgtt 38140681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 576 - 662
Target Start/End: Complemental strand, 38558759 - 38558674
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 662  Q
    |||| |||||||||||||| | | |||||||||||| | || |||| |||  |||||||||| ||||||  ||||||||||||||||    
T  38558759 tgaaaggtaaaaaagtgagacagagttgtgaaaatttattgaagatatatc-gattcaattttagatatatatcagtataattgttt 38558674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 459 - 560
Target Start/End: Original strand, 17328607 - 17328707
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    |||||||||||| ||||||||| | |||| |||||  ||||||||| |||  || | ||||||| |   ||||||||||||||||||||||| | |||||    
T  17328607 aattaattattt-aatttaaaaaaaatatattatcggatacttatatgatactccatagatacacaatgatacttataagatacttcacatatatgtatc 17328705  T
Q  559 ct 560  Q
    ||    
T  17328706 ct 17328707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 38221929 - 38221864
Alignment:
Q  375 gatactccataatagaaacgtacccgtatcatatacatattagataccgatactctacggatactc 440  Q
    ||||||||| ||  || |||||||||||||  |||| |||| ||||||||||||| ||||||||||    
T  38221929 gatactccaaaacggagacgtacccgtatcggatacgtattggataccgatactccacggatactc 38221864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-99; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 450 - 888
Target Start/End: Complemental strand, 31397423 - 31396988
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||  |||| ||| |||||||||||||  ||||||     
T  31397423 gagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagatattcgacatgtacacacagatacttataagatgtttcacac 31397324  T
Q  550 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
    | ||||||||||||| ||         ||| |||||||||||||| |||||||||||||||| |||||| || ||||||| |||||||||||||| ||||    
T  31397323 atacgtatcctggaaaaaaac------gaaaggtaaaaaagtgagactgtgttgtgaaaattgaatggaaatatatatgactcaatttaagatataaatc 31397230  T
Q  650 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 749  Q
    | |||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| || |||||| | || |||||||||||||| | ||||||||||||    
T  31397229 actataattgtttttcaattaaccaattgaaaattatgttattggtgaatgaaagtaacgagagagaagatattcaatcaatcaacattaaacaaacttt 31397130  T
Q  750 gtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgc 845  Q
    || |||||||||||||||||||||||||||||||    ||||||| ||| |||||| |||||||||||||| |||| ||    |||| |||||||||| |    
T  31397129 gttttgagttcttttattgatgcatttgttgatatcccaacatataaataaaaataaaatatgatttatatgaaaattttatattttttattttgatcac 31397030  T
Q  846 atgtattatttttctgtaaatgatgacttttataattatatag 888  Q
    | |||||| |||| |||||||  |||||||||| |||||||||    
T  31397029 aagtattactttt-tgtaaattgtgacttttatgattatatag 31396988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 459 - 888
Target Start/End: Complemental strand, 44798423 - 44797994
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    ||||||||||||||||||||||| ||| ||||||   |||  ||||||||  |||| |||||||  || ||| ||||||||||||||||| |||||||||    
T  44798423 aattaattattttaatttaaaatttattttttattggatatatataagatactcgatagatacatccatatatttataagatacttcacagagacgtatc 44798324  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 658  Q
     |  ||  ||       |||| ||||||||| | |   ||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||    
T  44798323 tt--aaagagagaaaaatgaagggtaaaaaaataaaattgtgttgtgaaaattcagtggagatgtatgtgtttcaatttaagatatgaatcactataatt 44798226  T
Q  659 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagt 758  Q
     ||| || ||||||||||||||| ||||||||||||||||| |||| || |||||  || ||||||||||||||||   |||| ||||||||| ||||||    
T  44798225 atttctcaattaaccaattaaaatttatgtttttggtggataaaagtaacgagag--agaagattcaatcaatcaacgttaaataaactttgttttgagt 44798128  T
Q  759 tcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt----tttatattttgatcgcatgtattat 854  Q
    |||||||||||  ||||||||||||   ||||||||||||||||||| |||||||||||||  ||||||||    ||| |||||||||| |||||||| |    
T  44798127 tcttttattgaaacatttgttgatatcctaacatatgaatgaaaatataatatgatttatacgaaaactttacaatttttattttgatcacatgtatttt 44798028  T
Q  855 ttttctgtaaatgatgacttttataattatatag 888  Q
    |||| |||||||  |||||||||| |||||||||    
T  44798027 ttttttgtaaattgtgacttttatgattatatag 44797994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 457 - 720
Target Start/End: Original strand, 48138396 - 48138652
Alignment:
Q  457 ggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgta 556  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||| ||||||||||||||||||||||||| |||||||    
T  48138396 ggaattaattattttaatttaaaatatatattttatcggatacttataagatactcgacagatacacacaaatacttataagatacttcacagagacgta 48138495  T
Q  557 tcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataa 656  Q
    |||||||| ||        ||||   |||| || |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  48138496 tcctggaaaaa------aatgaagcttaaataaatgagactgtgttctgaaaatttaatggagatgtatatgattcaatttaagatatgaatcactataa 48138589  T
Q  657 ttgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggag 720  Q
    || |||||||| |||||||||||||||||||||||||||||||||||  || |||||| |||||    
T  48138590 ttatttttcga-taaccaattaaaaattatgtttttggtggatgaaaataacgagagagaggag 48138652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 583 - 735
Target Start/End: Complemental strand, 46192383 - 46192231
Alignment:
Q  583 taaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaa 682  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||||||||| ||||| ||  ||||||    
T  46192383 taaaaaagtgagaatgtgttgtgaaaattcaatgaagatgtatatgatttaatttaagatatgaatcacaataattgtttttctattaatcatataaaaa 46192284  T
Q  683 ttatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaat 735  Q
     |||||||||| |||||||||| || |||| | | ||||||||||| ||||||    
T  46192283 atatgtttttgttggatgaaagtaacgagatagatgagattcaatctatcaat 46192231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 459 - 646
Target Start/End: Original strand, 2483666 - 2483847
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| |||  |||| ||||| | ||||||||||||||||||||||| | ||||||||     
T  2483666 aattaattattttaatttaaaatatatattttattgaatacttataggatactcgaaagatatacacaaatacttataagatacttcaaagagacgtatt 2483765  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatga 646  Q
    |||||   ||         ||| ||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  2483766 ctggagagagaaa------aattgtaaaaaagtgagactatgttgtgaaaatgcaatgaagatgtatatgattcaatttaagatatga 2483847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 459 - 691
Target Start/End: Original strand, 16817742 - 16817964
Alignment:
Q  459 aattaattattttaatttaaaa-tatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    ||||| |||||||||||||||| ||| |||||||||  ||||||||| |||  |||||| |||||  |||||||||||| ||||||||||| | ||||||    
T  16817742 aattagttattttaatttaaaaatatgtattttatcggatacttataggatactcgacaaataca--caaatacttatatgatacttcacaaatacgtat 16817839  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    ||||||| ||         ||  |||||| |||| ||  |||  ||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||    
T  16817840 cctggaaaaaac-------gatgggtaaataagtaagattgtactgtgaaaat-caatggagatgtatatgatttaatttaagat-tgaatcagtataat 16817930  T
Q  658 tgtttttcgattaaccaattaaaaattatgtttt 691  Q
    |||||||||||||| ||||| ||| |||||||||    
T  16817931 tgtttttcgattaatcaatttaaatttatgtttt 16817964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 628 - 701
Target Start/End: Original strand, 24699810 - 24699882
Alignment:
Q  628 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatga 701  Q
    ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24699810 gattcaatttaagatatgaattactataattgtttttcga-taaccaattaaaaattatgtttttggtggatga 24699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 24699733 - 24699805
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagataca 522  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||||||    
T  24699733 gagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagatactcgacagataca 24699805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 458 - 536
Target Start/End: Complemental strand, 9229569 - 9229491
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 536  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||| ||  |||||||||    
T  9229569 gaattaattattttaatttaaaatatatattttattggatacttataagataatcgacagatacacacggatacttata 9229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 723 - 828
Target Start/End: Original strand, 47277897 - 47278002
Alignment:
Q  723 tcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataa 822  Q
    |||||||||||| | ||| |||||||||| |||| |||||||||||| |||||||||||||   ||| |||||| ||||||||||| || ||||||| ||    
T  47277897 tcaatcaatcaacattaatcaaactttgttttgaattcttttattgaagcatttgttgatatcctaatatatgagtgaaaatagaaaattatttatacaa 47277996  T
Q  823 aaactt 828  Q
    ||||||    
T  47277997 aaactt 47278002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 451 - 681
Target Start/End: Complemental strand, 45648455 - 45648231
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||   |||||||  |||  || ||||||||| |   |||||| |||||||||||||| |    
T  45648455 agtatcggaattaattattttaatttttaataaatattttatcgggtacttatgtgatactccacagatacataaggatacttctaagatacttcacaga 45648356  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 650  Q
     ||||||||| ||| |||       |||   ||||||||||||| |  |||||| |||||||| |  |||||||||||||||||||| ||||||| ||||    
T  45648355 tacgtatcctagaaaaaga------tgaggagtaaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgattcaattttagatatgcatca 45648262  T
Q  651 gtataattgtttttcgattaaccaattaaaa 681  Q
     || |||||||| ||| | ||||| ||||||    
T  45648261 atagaattgtttctcggtgaaccacttaaaa 45648231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 459 - 508
Target Start/End: Complemental strand, 46192472 - 46192423
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagat 508  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46192472 aattaattattttaatttaaaatatatattttatcagatacttataagat 46192423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 458 - 560
Target Start/End: Original strand, 34471659 - 34471761
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    ||||||||||||||||||| ||| | ||||||||||  ||||||||| |||  |  | ||||||| |  |||||||||||||||||||||||| ||||||    
T  34471659 gaattaattattttaattttaaaaaaatattttatctgatacttataggatacttcatagatacacaagaatacttataagatacttcacatatacgtat 34471758  T
Q  558 cct 560  Q
    |||    
T  34471759 cct 34471761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 459 - 548
Target Start/End: Complemental strand, 6562470 - 6562382
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 548  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||| || ||| ||||| ||| ||| |||| | ||||||||||    
T  6562470 aattaattattttaatttaaaatatatattttatcggatgcttataagatc-tcaacaaatacacacatatatttattaaatacttcaca 6562382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 618 - 683
Target Start/End: Complemental strand, 25482674 - 25482609
Alignment:
Q  618 agatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 683  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||||| || || ||||||||    
T  25482674 agatgtatatgattcaattttagatatgcatcaatataattgtttttcgatgaaacacttaaaaat 25482609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 787 - 892
Target Start/End: Original strand, 48138659 - 48138767
Alignment:
Q  787 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 882  Q
    ||||||||||| ||||||| |||||||||||||  |||||||    |||| |||||||||| ||| |||||||||| |||||||  ||| |||||| |||    
T  48138659 taacatatgaacgaaaatataatatgatttatacgaaaactttacattttttattttgatcacatatattattttt-tgtaaattgtgaattttatgatt 48138757  T
Q  883 atatagtatt 892  Q
    ||||||||||    
T  48138758 atatagtatt 48138767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 451 - 662
Target Start/End: Original strand, 45492049 - 45492258
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| |||||||||||||||||||||||| |||||| |||||  ||||||||| |||  || | || |||| |   |||||||||||||||||| ||||    
T  45492049 agtatcggaattaattattttaatttaaaaaatatatattatcggatacttatatgatactccataggtacacaatgatacttataagatacttcgcata 45492148  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 650  Q
     | ||||||| ||| |||         |||  |||||||||||| |  |||||| ||||||||   |||| |||||||||||||||| ||||||| || |    
T  45492149 tatgtatcctagaaaaagatgaagggaaat--taaaaaagtgagacaatgttgtaaaaattcaggagagacgtatatgattcaattttagatatgcatta 45492246  T
Q  651 gtataattgttt 662  Q
    ||  ||||||||    
T  45492247 gtcgaattgttt 45492258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 577 - 627
Target Start/End: Original strand, 47277149 - 47277199
Alignment:
Q  577 gaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatat 627  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  47277149 gaatggtaaaaaagtgagattgtgttgtgaaaattcaatagagatgtatat 47277199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 615 - 660
Target Start/End: Original strand, 3094258 - 3094303
Alignment:
Q  615 tggagatgtatatgattcaatttaagatatgaatcagtataattgt 660  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||    
T  3094258 tggagatgtatatgattcaatttaagatatgaattagtttaattgt 3094303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 584 - 681
Target Start/End: Complemental strand, 3751600 - 3751503
Alignment:
Q  584 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||| |  ||||||||||| | | | ||||||||||||||||||||| ||||||| |||| || |||||||| ||||| || || ||||||    
T  3751600 aaaaaagtgagacaatgttgtgaaaacttagtagagatgtatatgattcaattttagatatgcatcaataaaattgtttctcgatgaatcacttaaaa 3751503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 576 - 819
Target Start/End: Original strand, 22201110 - 22201353
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||||||||||||| |||| |  |||| | |||||||| |||||||||||||| || ||||| |||| || ||| ||| |||||||| ||||| |||||     
T  22201110 tgaatggtaaaaaaatgagacaatgttctaaaaattcagtggagatgtatatgttttaattttagat-tgtatcggtagaattgtttctcgataaaccac 22201208  T
Q  676 ttaaaaattatgtttttggtggatgaaagcaaagag-agat-aggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgca 773  Q
    |||||| ||||| || |  |  ||||| | || ||| | || | || ||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| |     
T  22201209 ttaaaa-ttatgcttcttattaatgaaggtaatgaggaaatgaagatattcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatact 22201307  T
Q  774 tttgttgatactataacatatgaatgaaaatagaatatgatttata 819  Q
    | || ||||| | |||  |||||||||||||| |||||||||||||    
T  22201308 tctgctgatattctaatgtatgaatgaaaatataatatgatttata 22201353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 576 - 819
Target Start/End: Complemental strand, 22236711 - 22236468
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||||||||||||| |||| |  |||| | |||||||| |||||||||||||| || ||||| |||| || ||| ||| |||||||| ||||| |||||     
T  22236711 tgaatggtaaaaaaatgagacaatgttctaaaaattcagtggagatgtatatgttttaattttagat-tgtatcggtagaattgtttctcgataaaccac 22236613  T
Q  676 ttaaaaattatgtttttggtggatgaaagcaaagag-agat-aggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgca 773  Q
    |||||| ||||| || |  |  ||||| | || ||| | || | || ||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| |     
T  22236612 ttaaaa-ttatgcttcttattaatgaaggtaatgaggaaatgaagatattcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatact 22236514  T
Q  774 tttgttgatactataacatatgaatgaaaatagaatatgatttata 819  Q
    | || ||||| | |||  |||||||||||||| |||||||||||||    
T  22236513 tctgctgatattctaatgtatgaatgaaaatataatatgatttata 22236468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 618 - 734
Target Start/End: Original strand, 7857938 - 7858053
Alignment:
Q  618 agatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagatag 717  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||| ||  | ||||| ||||||| ||| ||| | ||||||||  | ||  ||||| ||    
T  7857938 agatgtatatgattcaattttagatatgaaacagtagaattgtttctcattgaaccacttaaaaa-tatatttattgtggatgatggtaacaagagagag 7858036  T
Q  718 gagattcaatcaatcaa 734  Q
    |||||||||| ||||||    
T  7858037 gagattcaattaatcaa 7858053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 584 - 771
Target Start/End: Complemental strand, 42040561 - 42040377
Alignment:
Q  584 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 683  Q
    ||||||||||| |  |||||| |||||||| |  |||||||||||| ||||||| ||||||| |||| || |||||| | ||||| || || || |||||    
T  42040561 aaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgactcaattttagatatgcatcaatagaattgtctctcgatgaaacactt-aaaat 42040463  T
Q  684 tatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatg 771  Q
    |||  || | ||||||||| |||  |||||||  | |||||| | |||||| | || | ||| ||||| |||||||||||||||||||    
T  42040462 tatacttcttgtggatgaacgcatcgagagat--gtgattcagttaatcaacattagataaaatttgtgttgagttcttttattgatg 42040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 576 - 662
Target Start/End: Complemental strand, 47843879 - 47843793
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 662  Q
    |||| ||||||||||| || |  |||||| |||| ||| | ||||||||||||||||||||| ||||||| |||| || ||||||||    
T  47843879 tgaagggtaaaaaagttagacaatgttgtaaaaactcagtagagatgtatatgattcaattttagatatgcatcaataaaattgttt 47843793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 458 - 681
Target Start/End: Complemental strand, 43495977 - 43495761
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    ||||||||||||| ||||||||| | |||||||| |  ||||||||| |||  ||   ||||||| | || |||||||||||||||||||| | | ||||    
T  43495977 gaattaattatttaaatttaaaaaaaatattttaacggatacttatacgatactctgtagatacacataa-tacttataagatacttcacagatatgtat 43495879  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    |||  || |||       ||||  ||||||||||||| |  | |||| || || || | ||||| ||||||||||||||| ||||||| |||| || |||    
T  43495878 cctataaaaagg------tgaagagtaaaaaagtgagacaatcttgtaaacatccagtagagatatatatgattcaattttagatatgcatcactaaaat 43495785  T
Q  658 tgtttttcgattaaccaattaaaa 681  Q
    ||||| ||||| ||||| ||||||    
T  43495784 tgtttctcgatgaaccacttaaaa 43495761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 617 - 681
Target Start/End: Original strand, 40836439 - 40836503
Alignment:
Q  617 gagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||| ||||||||||||||| ||||||| |||| || |||||||| ||||| ||||| ||||||    
T  40836439 gagatctatatgattcaattttagatatgcatcactagaattgtttctcgatgaaccacttaaaa 40836503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 9e-95; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 9e-95
Query Start/End: Original strand, 443 - 819
Target Start/End: Original strand, 44746290 - 44746663
Alignment:
Q  443 atccatagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatac 542  Q
    ||||| |||||||  ||||||||||||||||||||||||||||  |||||| ||||||||||| ||  |||||| ||| | ||| ||| |||||||||||    
T  44746290 atccacagagtatcagaattaattattttaatttaaaatatat--tttatcgaatacttataaaatactcgacatatatacacatatatttataagatac 44746387  T
Q  543 ttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagat 642  Q
    |||||| | ||||||| | ||| |||       | || |||| |||| |||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  44746388 ttcacagatacgtatcattgaaaaagaagaaatt-aagggtataaaaatgagactttgttgtgaaaattcaattgagatgtatatgattcaatttaagat 44746486  T
Q  643 atgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaac 742  Q
    || ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||||||||| ||| | |||||    
T  44746487 ataaattactataattgtttttcgattaaccaattataaattatgtttttggtggatgaaagtaacgagagagaggagattcaatcaaccaacattaaac 44746586  T
Q  743 aaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 819  Q
    ||||||||| ||||||| |||||||||||||||||||||||   ||| ||||||||||||||| |||||||||||||    
T  44746587 aaactttgttttgagtttttttattgatgcatttgttgatatcctaagatatgaatgaaaataaaatatgatttata 44746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 6e-62
Query Start/End: Original strand, 581 - 829
Target Start/End: Complemental strand, 43770673 - 43770428
Alignment:
Q  581 ggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaa 680  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||    
T  43770673 ggtaaaaatgtgagactgtgttgtgaaaattcaatgaagatgtatatgattcaatttaagatatgaatcactacaattgtctttcgattaaccagttaaa 43770574  T
Q  681 aattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttg 780  Q
    |||| |||||||| |||||| |||||| |||||  || |||||||||||||||| | ||||||||| |||| ||||||| ||||||| ||| ||||||||    
T  43770573 aattgtgtttttgttggatgtaagcaacgagag--agaagattcaatcaatcaacattaaacaaac-ttgttttgagttattttattaatgaatttgttg 43770477  T
Q  781 atactataacatatgaatgaaaatagaatatgatttatataaaaacttt 829  Q
    |||   |||| ||||||  | ||||||||||||||||||  ||||||||    
T  43770476 atatcctaacgtatgaaatataatagaatatgatttatacgaaaacttt 43770428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 449 - 704
Target Start/End: Complemental strand, 34075392 - 34075140
Alignment:
Q  449 agagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 548  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||  ||||| |||||| | | |||||||||||||||||||||    
T  34075392 agagtatcggaattaattattttaatttaaaatatatattttatcggatacttatgagatactcgacggatacacatagatacttataagatacttcaca 34075293  T
Q  549 tagacgtatcctggaagaagnnnnnnntgaatggtaaaaaag-tgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaa 647  Q
     |||||||||||| |||||        ||||  ||||||||  ||||  |||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  34075292 aagacgtatcctg-aagaa--aaaaaatgaagtgtaaaaaaaatgagattgtgttatgaaaattcaattgagatgtatacgattcaatttaagatatgaa 34075196  T
Q  648 tcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaag 704  Q
    ||| ||||| || ||||||| |||| |||||||||||||||||||||||||||||||    
T  34075195 tcactataactgcttttcga-taacaaattaaaaattatgtttttggtggatgaaag 34075140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 601 - 896
Target Start/End: Original strand, 21619592 - 21619888
Alignment:
Q  601 ttgtgaaaattcaatggagatgtatatgattcaattt-aagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggat 699  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||| ||||||    
T  21619592 ttgtgaaaattcaatgaagatgtatatgattcaattttaagatatgaatgagtataattgtttttcgattaatcaatgaaaaattattttttttgtggat 21619691  T
Q  700 gaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatg 799  Q
    ||| | || |||||  || | |||||||||||||| | ||||||||||||   ||||||| |||||||||||||  |||| |||   ||||||||||||     
T  21619692 gaaggtaatgagag--agaaaattcaatcaatcaacattaaacaaacttttatttgagttattttattgatgcacgtgttaatatcctaacatatgaata 21619789  T
Q  800 aaaatagaatatgatttatataaaaactt---ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaag 896  Q
    |||||||||| || ||||   ||||  ||   ||||||||||||||| |||||||||||||| |||  ||  |||||||||| ||| ||||||| |||||    
T  21619790 aaaatagaatgtgtttta-cgaaaattttatattttatattttgatcacatgtattatttttttgtcgattgtgacttttatgattgtatagtaataaag 21619888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 581 - 819
Target Start/End: Complemental strand, 22198980 - 22198747
Alignment:
Q  581 ggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaa 680  Q
    ||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  22198980 ggtaaaaaagtgaggttgtgttgtaaaaattaaatgaagatgtatatgattcaatttaagacacgaatcactataattgtttttcgattaaccaattaaa 22198881  T
Q  681 aattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttg 780  Q
    ||| || |||||||||||  |||| || ||||   |||||||||| |||||||| | |||||||||||||| |||||||||    || |  |||||||||    
T  22198880 aatcatatttttggtggacaaaagtaatgaga-tcaggagattcagtcaatcaacattaaacaaactttgttttgagttct----ttaacacatttgttg 22198786  T
Q  781 atactataacatatgaatgaaaatagaatatgatttata 819  Q
    |||   |||||||| ||||||||||  ||||||||||||    
T  22198785 atatcctaacatataaatgaaaatacgatatgatttata 22198747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 606 - 803
Target Start/End: Original strand, 34733793 - 34733988
Alignment:
Q  606 aaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagc 705  Q
    |||| ||||||||||| ||| ||||| || |||| |||| |||||| |||||| |||||| |||||||||||||| ||||| ||||||||||||||| |     
T  34733793 aaaaatcaatggagatatatgtgatttaagttaaaatataaatcagcataattatttttcaattaaccaattaaatattatatttttggtggatgaaggt 34733892  T
Q  706 aaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaa 803  Q
    || || ||  || | ||| ||| ||||||   |||||||| ||||| || |||  |||||||||||||||| ||||||   |||||||||||||||||    
T  34733893 aacgaaag--agaaaattaaataaatcaacgttaaacaaaatttgttttaagtgtttttattgatgcatttattgatatcctaacatatgaatgaaaa 34733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 458 - 536
Target Start/End: Complemental strand, 47724816 - 47724738
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 536  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| || ||||||||||    
T  47724816 gaattaattattttaatttaaaatatatattttatcggatacttataagataatcgacagatacacacgaatacttata 47724738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 576 - 681
Target Start/End: Complemental strand, 10037976 - 10037871
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| |||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||| ||||| |||||     
T  10037976 tgaagggtaaaaaagtgagacaatgttgcgaaaattcaatggagatgtatatgattcaattttagatatgcatcagtagatttgtttctcgatgaaccac 10037877  T
Q  676 ttaaaa 681  Q
    ||||||    
T  10037876 ttaaaa 10037871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 528 - 681
Target Start/End: Original strand, 53586369 - 53586516
Alignment:
Q  528 atacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatat 627  Q
    ||||||||||||||||||||| | ||||||||| ||| |||       |||| ||||||| |||||| |  |||||| || ||||||| |||||||||||    
T  53586369 atacttataagatacttcacagatacgtatcctagaaaaaga------tgaagggtaaaatagtgagacaatgttgtaaacattcaatagagatgtatat 53586462  T
Q  628 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||||| ||||||| |||| ||||||||||| ||||| ||| | ||||||    
T  53586463 gattcaatttcagatatgcatcactataattgtttctcgatgaactacttaaaa 53586516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 599 - 825
Target Start/End: Original strand, 44987299 - 44987522
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtgga 698  Q
    |||||| |||||||| | |||||||| |||||||||||| ||||||| ||| ||| |||||||| || || ||| | || ||||||||  || | |||||    
T  44987299 tgttgtaaaaattcactcgagatgtacatgattcaattttagatatgcatcggtagaattgtttctcaatgaactactt-aaaattatacttcttgtgga 44987397  T
Q  699 tgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaat 798  Q
    |||| | || || ||| | |||||||||| |||||| | || ||||| ||||  | ||||||||||| |||||  | |||||| |   |||||||||| |    
T  44987398 tgaaggtaacgaaagagaagagattcaattaatcaacattatacaaaatttg--tcgagttcttttaatgatgtttatgttgaaatcttaacatatgatt 44987495  T
Q  799 gaaaatagaatatgatttatataaaaa 825  Q
    |||||||  ||||||| ||||||||||    
T  44987496 gaaaatatgatatgatctatataaaaa 44987522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 709 - 827
Target Start/End: Complemental strand, 35823578 - 35823460
Alignment:
Q  709 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 808  Q
    |||||| | |||||||||| |||||| | || ||||| ||||| ||||||||||||| |||  | | | ||||||   ||||||||||||||||||| ||    
T  35823578 gagagagaagagattcaattaatcaacattatacaaaatttgtgttgagttcttttaatgacacttctattgatatcctaacatatgaatgaaaataaaa 35823479  T
Q  809 tatgatttatataaaaact 827  Q
    ||||||||||| |||||||    
T  35823478 tatgatttataaaaaaact 35823460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 446 - 508
Target Start/End: Complemental strand, 43770873 - 43770811
Alignment:
Q  446 catagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagat 508  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  43770873 catagagaattaaaattaattattttaatttaaaatatatattttatcggatacttataagat 43770811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 372 - 508
Target Start/End: Original strand, 6255212 - 6255346
Alignment:
Q  372 ccggatactccataatagaaacgtacccgtatcatatacatattagataccgatactctacggatactcacatccatagagtattggaattaattatttt 471  Q
    |||||||||| | ||| || |||||||||||||  ||| | ||| ||||||||||||| ||||||||  |  ||||  ||||||  ||||||||||||||    
T  6255212 ccggatactctaaaatggagacgtacccgtatcggatatacattggataccgatactccacggatacgta--tccacggagtatcagaattaattatttt 6255309  T
Q  472 aatttaaaatatatattttatcaaatacttataagat 508  Q
    ||||| |||||||| ||||| |  |||||||||||||    
T  6255310 aattttaaatatattttttaccggatacttataagat 6255346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 787 - 892
Target Start/End: Original strand, 10632247 - 10632355
Alignment:
Q  787 taacatatgaatgaaaatagaatatgatttatataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 882  Q
    ||||||||||||||||||| |||||||||||||  ||||||||    |||  ||||||||| |||||||||||||| |||||||  |||| ||||| |||    
T  10632247 taacatatgaatgaaaataaaatatgatttatacgaaaactttacatttttaattttgatcacatgtattattttt-tgtaaattgtgacatttatgatt 10632345  T
Q  883 atatagtatt 892  Q
    ||||| ||||    
T  10632346 atataatatt 10632355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 458 - 771
Target Start/End: Complemental strand, 19721931 - 19721627
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    |||||||||||||||||||  |||| ||||||||||  ||||||||  |||  || ||||||||| |   ||| || |||||||||||||||| ||||||    
T  19721931 gaattaattattttaatttttaataaatattttatcggatacttatgtgatactccacagatacacaatgatatttctaagatacttcacatacacgtat 19721832  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    ||| ||| |||       ||||  ||||||||||||| |  |||||| |||||||| |  |||| ||||||| | |||||  |||||| |||| || |||    
T  19721831 cctagaaaaag------atgaagagtaaaaaagtgagacgatgttgtaaaaattcattatagatatatatgacttaattttggatatgcatcaatagaat 19721738  T
Q  658 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgag 757  Q
    ||||| || ||||| || || ||||||||  || | ||||||||| | |  |||||||  | |||||||| |||||| | || | ||| ||||| |||||    
T  19721737 tgtttctcaattaaacactt-aaaattatacttcttgtggatgaacgtagcgagagat--gtgattcaattaatcaacattagataaaatttgtgttgag 19721641  T
Q  758 ttcttttattgatg 771  Q
    |||||||| |||||    
T  19721640 ttcttttaatgatg 19721627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 576 - 811
Target Start/End: Original strand, 4775801 - 4776034
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| |||||||||||||| |  |||||||| |||| | |||| ||||||||||| |||||| ||||||| ||||   ||||||||| ||||| | |||     
T  4775801 tgaagggtaaaaaagtgagacaatgttgtgataatttagtggaaatgtatatgat-caattttagatatgcatcaaagtaattgtttctcgataatccac 4775899  T
Q  676 ttaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatt 775  Q
    |||||| ||||  || | |||||||||   |  |||| | |||||||| | | ||||   | || ||||| ||||| ||||||||||| | |||||| |     
T  4775900 ttaaaa-ttatacttattgtggatgaagttagcgagaaagaggagatttagttaatcggcattagacaaaatttgtgttgagttctttcaatgatgctta 4775998  T
Q  776 tgttgatactataacatatgaatgaaaatagaatat 811  Q
    |||||||| ||||||||||| ||||||||| |||||    
T  4775999 tgttgatattataacatatggatgaaaatataatat 4776034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 658 - 767
Target Start/End: Complemental strand, 25204522 - 25204405
Alignment:
Q  658 tgtttttcgattaaccaattaaaaattatg-----tttttggtggatgaaagcaa--agagagat-aggagattcaatcaatcaatagtaaacaaacttt 749  Q
    ||||||||||||||||||||||||||| ||     |||||  |||||||||| ||  |||||||| | ||||||||||||||||| | |||||||| |||    
T  25204522 tgtttttcgattaaccaattaaaaattgtgtttttttttttatggatgaaagtaaccagagagatgatgagattcaatcaatcaacattaaacaaaattt 25204423  T
Q  750 gtattgagttcttttatt 767  Q
    || |||| ||||||||||    
T  25204422 gttttgaattcttttatt 25204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 450 - 564
Target Start/End: Complemental strand, 38948694 - 38948586
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||| |||| ||||||||||||||||||||||||||||||  |||    ||||||||   ||| ||||||| ||  ||||||||| |||||||||||     
T  38948694 gagtatcggaactaattattttaatttaaaatatatatttta--aaa----tataagatatccgatagatacacacggatacttatacgatacttcacag 38948601  T
Q  550 agacgtatcctggaa 564  Q
    ||||||||| |||||    
T  38948600 agacgtatcttggaa 38948586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 583 - 681
Target Start/End: Original strand, 45774026 - 45774124
Alignment:
Q  583 taaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||||||| |  |||||| |||||||| |  |||||||||||||||||||| ||||||  |||| || |||||||| ||||| ||||| ||||||    
T  45774026 taaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgattcaattttagatatacatcaatagaattgtttctcgatgaaccacttaaaa 45774124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 451 - 560
Target Start/End: Original strand, 2295266 - 2295375
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||| ||| ||||  |||  || ||||||||| |   |||||| |||||||||||||| |    
T  2295266 agtatcggaattaattattttaatttttaataaatattttatcagatatttatgggatattccacagatacacaatgatacttctaagatacttcacaga 2295365  T
Q  551 gacgtatcct 560  Q
     |||||||||    
T  2295366 cacgtatcct 2295375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 599 - 680
Target Start/End: Complemental strand, 28102098 - 28102017
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaa 680  Q
    |||| |||||||||| | ||||||||||| ||||||||| | |||||||| |||| |||||||| ||||| ||||| |||||    
T  28102098 tgttatgaaaattcagttgagatgtatattattcaattttatatatgaataagtaaaattgtttctcgatgaaccacttaaa 28102017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 453 - 508
Target Start/End: Complemental strand, 22199070 - 22199015
Alignment:
Q  453 tattggaattaattattttaatttaaaatatatattttatcaaatacttataagat 508  Q
    ||||| ||||||||||||||||||||||| ||| |||||||  |||||||||||||    
T  22199070 tattgaaattaattattttaatttaaaatgtattttttatcggatacttataagat 22199015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 458 - 544
Target Start/End: Original strand, 21619458 - 21619544
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatactt 544  Q
    ||||||||||||||||||||||| | || |||||||   |||||||| |||  || ||| ||||||| |||||||||||| ||||||    
T  21619458 gaattaattattttaatttaaaaaaaatgttttatcggttacttatatgatactccacatatacaaataaatacttataaaatactt 21619544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 576 - 662
Target Start/End: Original strand, 27675450 - 27675536
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 662  Q
    |||| ||||||| |||||| |  ||||||||| |||||   ||||||||||||||||||||| ||||||| |||| || ||||||||    
T  27675450 tgaagggtaaaatagtgagacaatgttgtgaagattcagcagagatgtatatgattcaattttagatatgcatcaatagaattgttt 27675536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 576 - 674
Target Start/End: Complemental strand, 35823700 - 35823602
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaacca 674  Q
    |||| ||||| |||||||| |  |||||||||||   | |||| |||||||| ||||||||| |||||||||| |||| |||||||| ||||| |||||    
T  35823700 tgaagggtaagaaagtgagacaatgttgtgaaaaaatattggaaatgtatataattcaattttagatatgaattagtagaattgtttctcgataaacca 35823602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 582 - 659
Target Start/End: Complemental strand, 35103620 - 35103543
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattg 659  Q
    ||||||||||||| |  |||||| |||||||| |  | |||||||||||||||||| ||||||| |||| ||||||||    
T  35103620 gtaaaaaagtgagacaatgttgtaaaaattcattataaatgtatatgattcaattttagatatgcatcattataattg 35103543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 829 - 892
Target Start/End: Complemental strand, 47724735 - 47724673
Alignment:
Q  829 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  47724735 ttttttattttgatcacatgtattattttt-tgtaaattgcgacttttatgattatatagtatt 47724673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 621 - 771
Target Start/End: Complemental strand, 53018632 - 53018485
Alignment:
Q  621 tgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggag 720  Q
    ||||||||||||||||| ||||||| |||| || |||||||| || || || || || ||||||||  || | |||||||||  || || |||||||| |    
T  53018632 tgtatatgattcaattttagatatgcatcaatagaattgtttctcaatgaatcagtt-aaaattatacttattgtggatgaa--catagcgagataggtg 53018536  T
Q  721 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatg 771  Q
    ||||| | |||||| | |||| ||| ||| | ||||||||||||| |||||    
T  53018535 attcagttaatcaacattaaataaaatttatgttgagttcttttaatgatg 53018485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 459 - 518
Target Start/End: Complemental strand, 54163489 - 54163430
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacaga 518  Q
    |||||||||||||||| |||||||||||||||||   ||||||||| |||  ||||||||    
T  54163489 aattaattattttaatgtaaaatatatattttattggatacttatatgatattcgacaga 54163430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 459 - 549
Target Start/End: Complemental strand, 47923170 - 47923080
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||||||||||||||| ||| | ||||||||||  ||||||||| |||  |  ||||||||| |   |||||| |||||||||||||||    
T  47923170 aattaattattttaattttaaaaaaatattttatcggatacttatatgatatttcacagatacacaatgatacttctaagatacttcacat 47923080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 458 - 503
Target Start/End: Complemental strand, 2243087 - 2243042
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttat 503  Q
    |||||||||||||||||||  |||| |||||||||| |||||||||    
T  2243087 gaattaattattttaatttttaataaatattttatcgaatacttat 2243042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 788 - 850
Target Start/End: Complemental strand, 38947745 - 38947679
Alignment:
Q  788 aacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgta 850  Q
    |||||||||||||||||||||||| |||||||  |||| ||    ||||||||||||||| ||||||    
T  38947745 aacatatgaatgaaaatagaatataatttatacgaaaattttatattttatattttgatcacatgta 38947679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 2e-89; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 459 - 829
Target Start/End: Complemental strand, 31489749 - 31489382
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  |  ||||||||| |||||||||| |||||||| |||||||||| ||||    
T  31489749 aattaattattttaatttaaaatatatattttatcatatacttataagatattttacagatacacacaaatacttgtaagatacgtcacatagacatatc 31489650  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 658  Q
    ||| || ||        |||| |||||||| |||||   || |||||||||||||||| | |||||||||||||||||||||| | |||||||||| |||    
T  31489649 ctgcaaaaa------aatgaagggtaaaaatgtgagagcgtattgtgaaaattcaatgaa-atgtatatgattcaatttaagacacgaatcagtatgatt 31489557  T
Q  659 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaag---caa-agagagataggagattcaatcaatcaatagtaaacaaactttgtatt 754  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |   ||| |||||||||  ||||| |||||||||| | |||||||| ||||| ||    
T  31489556 gtttttcgattaaccaattaaaatttatgtttttggtggatgaaggtgacaagagagagataatagatttaatcaatcaacattaaacaaattttgtttt 31489457  T
Q  755 gagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 829  Q
    ||||||||||||||||||||||| |||||   ||||||||||||||||||| |||||||||||||  ||||||||    
T  31489456 gagttcttttattgatgcatttgctgatatcttaacatatgaatgaaaataaaatatgatttatacgaaaacttt 31489382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 458 - 808
Target Start/End: Complemental strand, 24611686 - 24611339
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||  |||||| ||||| | | |||||| || |||||| |||| ||||||||    
T  24611686 gaattaattattttaatttaaaatacatattttatcggatacttataagatactcgacaaatacacatagatacttgtacgatactacacagagacgtat 24611587  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    ||||| | ||        |||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  24611586 cctgggaaaa-----aaatgaagggtaaaaaagtgagattgtgttgtgaaaaatcaatggagatgtatatgattcaatttaatatatgaatcactataat 24611492  T
Q  658 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaatagtaaacaaactttgtattg 755  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| ||  || |||| ||||||||||||||||||| | |||||||||||  | |||    
T  24611491 tgtttttcaattaaccaattaaaaattatgtttttggtggttgaaagtaacgagggagagaggagattcaatcaatcaacattaaacaaacttgattttg 24611392  T
Q  756 agttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 808  Q
    |||||||||||||| ||||||||||||  | ||| |||||||| |||||||||    
T  24611391 agttcttttattgaagcatttgttgattttctaatatatgaataaaaatagaa 24611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 4e-63
Query Start/End: Original strand, 459 - 829
Target Start/End: Original strand, 50387090 - 50387442
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||  | |||| ||||| ||| |||||||||||||| |||||| |||||||      
T  50387090 aattaattattttagtttaaaatatatattttatcgaatacttataagatatttgacatatacacacatatacttataagataattcacaaagacgta-- 50387187  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 658  Q
        || ||         |||  |||||||| ||||  |||||||| ||||||||||| |    ||||||||||||||||| ||||||| || |||||||    
T  50387188 ----aaaaaaaaaac---gaaaagtaaaaaaatgagtttgtgttgttaaaattcaatgta----tatatgattcaatttaaaatatgaaccactataatt 50387276  T
Q  659 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagt 758  Q
     |||||  |||||||||||||||||||||||||||||||||||||| || ||||||  |||||||||||||||||| | |||||||||||| | | ||||    
T  50387277 attttt--attaaccaattaaaaattatgtttttggtggatgaaagtaacgagaga--ggagattcaatcaatcaacattaaacaaactttatct-gagt 50387371  T
Q  759 tcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 829  Q
    || |||||||||| ||||||| ||| | |||||||| ||||||||||||||||||||||||  ||||||||    
T  50387372 tcctttattgatgtatttgttaatattctaacatataaatgaaaatagaatatgatttatacgaaaacttt 50387442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 458 - 714
Target Start/End: Original strand, 43471675 - 43471921
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||||||  |||||||||||| ||| ||||||||||||||||||| | ||||||||    
T  43471675 gaattaattattttaattttaaatatatattttatcggatacttataagatactcgacagatacacacagatacttataagatacttcatagagacgtat 43471774  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    |||| || ||        ||||  ||||||||   | |   ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||     
T  43471775 cctgaaaaaa------catgaaatgtaaaaaaaaaaag---tgttgtgaaaattcaattgagatgtatatgattcaatttaagatatgaatcactataac 43471865  T
Q  658 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagaga 714  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||    
T  43471866 tgtttttcga-taaccaattaaaaattatgtttttgttggatgaaagtaacgagaga 43471921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 8e-55
Query Start/End: Original strand, 461 - 707
Target Start/End: Original strand, 47014160 - 47014402
Alignment:
Q  461 ttaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatcct 560  Q
    |||||||||||| |||||||||||||||||||   |||| ||||||||  |||||||||||  | | ||||||||||||||||||||| |||||||||||    
T  47014160 ttaattattttactttaaaatatatattttattggatacctataagatactcgacagatacgcatagatacttataagatacttcacaaagacgtatcct 47014259  T
Q  561 ggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgt 660  Q
      ||||||       | |   |||||||||||||  | |||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||    
T  47014260 --aagaagaaaaaa-taaggagtaaaaaagtgagaatatgttgtgaaaattcaatgaagatgtatatgattcaattta-gatataaatcattataattgt 47014355  T
Q  661 ttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaa 707  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  47014356 ttttcgattaaccaattaaaaattatgttttgggtggatgaaagcaa 47014402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 449 - 734
Target Start/End: Original strand, 24120952 - 24121235
Alignment:
Q  449 agagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 548  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  || ||||||||||  |||||||||||| | | |||||| ||||||||||||||    
T  24120952 agagtatcgaaattaattattttaatttaaaatatatattttatcggatgcttataagatactcgacagatacacatagatacttgtaagatacttcaca 24121051  T
Q  549 tagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaat 648  Q
    | |||||||| || || ||        |||| ||||||||||||||  ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  24121052 t-gacgtatcttgaaaaaa-----aaatgaagggtaaaaaagtgagaatgtgttgtgaaaaatcaatggaggtgtatttgattcaatttaagatatgaat 24121145  T
Q  649 cagtataattgtttttcgatt-aaccaattaaaaattatgtttttg-gtggatgaaagcaaagag--agataggagattcaatcaatcaa 734  Q
    || | ||||||||||||| || ||||||||||||||| |||||||  || |||||| | || |||  ||| |||||||||||||||||||    
T  24121146 cactgtaattgtttttcgctttaaccaattaaaaattgtgtttttttgttgatgaatgtaacgagggagagaggagattcaatcaatcaa 24121235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 620 - 892
Target Start/End: Original strand, 21842588 - 21842863
Alignment:
Q  620 atgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaag--caaagagagatag 717  Q
    |||||||||||| |||||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||||||||| ||||  | |||||||| ||    
T  21842588 atgtatatgattaaatttaagatatgaatcgctataattgtatttcgattaaccaaataaaaattatatttttggtggataaaagtaccaagagagaaag 21842687  T
Q  718 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgattta 817  Q
    || |||||||||||||| | |||| ||||||||| |  |||| ||||||||||| |||||||||||    ||| |||||||||||||| ||||| ||||     
T  21842688 gatattcaatcaatcaacattaaataaactttgtttatagtttttttattgatgtatttgttgatatccaaacttatgaatgaaaataaaatataatttt 21842787  T
Q  818 tataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    ||   | |||||     || |||||||||  ||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  21842788 tacgtagactttacaacttttattttgat--catgtattatttttc-gtaaatcgtgacttttatgattatatagtatt 21842863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 620 - 892
Target Start/End: Original strand, 21858231 - 21858504
Alignment:
Q  620 atgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagatagga 719  Q
    |||||||||||| |||||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||||||||| |||| |  |||||| ||||    
T  21858231 atgtatatgattaaatttaagatatgaatcgctataattgtatttcgattaaccaaataaaaattatatttttggtggataaaagtaccgagagagagga 21858330  T
Q  720 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 819  Q
     |||||||||||||| | |||| ||||||||| |   ||| ||||||||||| | |||||||||    ||| |||||||||||||||||||| |||| ||    
T  21858331 tattcaatcaatcaacattaaataaactttgtttattgtttttttattgatgtagttgttgatatccaaacttatgaatgaaaatagaatataattttta 21858430  T
Q  820 taaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
       | |||||     || |||||||||  ||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  21858431 cgtagactttacaacttttattttgat--catgtattatttttc-gtaaatcgtgacttttatgattatatagtatt 21858504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 576 - 734
Target Start/End: Complemental strand, 1341786 - 1341626
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| ||||||||||| |   ||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||    
T  1341786 tgaagggtaaaaaagttatattgtgttgtgaaaattcaatagagatgcatatgattcattttaagatatgaatcattataattgtttttcgattaactaa 1341687  T
Q  676 ttaaaaattatgtttttggtggatgaaagca--aagagagataggagattcaatcaatcaa 734  Q
    |||||||||||| ||| |||||||||||| |  ||| |||  |||||||||||| ||||||    
T  1341686 ttaaaaattatgctttgggtggatgaaagtaacaagtgagggaggagattcaataaatcaa 1341626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 720 - 892
Target Start/End: Original strand, 47014501 - 47014676
Alignment:
Q  720 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 819  Q
    ||||||| ||||||| | ||||| |||||||| || ||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||     
T  47014501 gattcaaccaatcaacattaaacgaactttgtttttagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatcgaatatgatttatg 47014600  T
Q  820 taaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
      ||| |||    |||| ||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||    
T  47014601 cgaaatctttacattttttattttgatcgcatgtattattttt-tgtaaattataacttttatgattatatagtatt 47014676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 720 - 892
Target Start/End: Original strand, 21853839 - 21854013
Alignment:
Q  720 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 819  Q
    ||||||||||||||| | |||| ||| ||||| | |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  21853839 gattcaatcaatcaacattaaataaaatttgtttagagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatagaatatgatttata 21853938  T
Q  820 taaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
      |  ||||     ||| ||||||||||  |||||||| ||||||||||||  |||||||||| |||||||||||||    
T  21853939 -gatcacttcacaatttttattttgatcatatgtatta-ttttctgtaaatcgtgacttttatgattatatagtatt 21854013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 450 - 562
Target Start/End: Original strand, 2111315 - 2111426
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    ||||||| |||||||||||||||||||||| |||||||||||||  |||||||||||||  |||| ||||||| ||| ||||||||||||||||||| |     
T  2111315 gagtattagaattaattattttaatttaaa-tatatattttatcggatacttataagatactcgatagatacacacagatacttataagatacttcatag 2111413  T
Q  550 agacgtatcctgg 562  Q
    |||||||||||||    
T  2111414 agacgtatcctgg 2111426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 453 - 536
Target Start/End: Original strand, 35433397 - 35433480
Alignment:
Q  453 tattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 536  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||| |||||||||    
T  35433397 tattagaattaattattttaatttaaaatatatattttatcggatacttataagataatcgacagatacacacagatacttata 35433480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 450 - 536
Target Start/End: Complemental strand, 12176718 - 12176632
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 536  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||  |||||||||    
T  12176718 gagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagataatcgacagatacacacggatacttata 12176632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 599 - 757
Target Start/End: Original strand, 20619294 - 20619452
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtgga 698  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||| || ||||||||| ||||||||| ||||| || |||||||| ||| | |||||    
T  20619294 tgttgtgaaaattcagtggaaatgtatatgattcaattttagatatgcataagtataattatttttcgatcaaccactt-aaaattatatttcttgtgga 20619392  T
Q  699 tgaaagcaaagagagatag-gagattcaatcaatcaatagtaaacaaactttgtattgag 757  Q
    ||||   | ||||||| || |||||||||| || || || || ||||| |||||||||||    
T  20619393 tgaagagagagagagagagagagattcaattaaccactaatagacaaaatttgtattgag 20619452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 458 - 536
Target Start/End: Complemental strand, 36172162 - 36172084
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 536  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||  |||||||||    
T  36172162 gaattaattattttaatttaaaatatatattttatcggatacttataagatgatcgacagatacacacggatacttata 36172084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 646 - 782
Target Start/End: Original strand, 8913548 - 8913685
Alignment:
Q  646 aatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagca--aagagagataggagattcaatcaatcaatagtaaaca 743  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||  |  | |  |||||||| ||   |||||||||||||| |  ||| |    
T  8913548 aatcaatataattgtttttcgattaaccaattaaaaattatg-ttttggttgactagggtaagaagagagagagacaattcaatcaatcaacataaaata 8913646  T
Q  744 aactttgtattgagttcttttattgatgcatttgttgat 782  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  8913647 aactttgttttgagtttttttattgatgcatttgttgat 8913685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 582 - 681
Target Start/End: Original strand, 29324097 - 29324196
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||||||||||  |||||| ||| ||||||  |||||||||| ||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||    
T  29324097 gtaaaaaagtgaggcaatgttgtaaaacttcaataaagatgtatatcattcaattttagatatgcatcaatataattgtttctcgatgaaccacttaaaa 29324196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 459 - 520
Target Start/End: Original strand, 16343066 - 16343127
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagata 520  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  16343066 aattaattcttttaatttaaaatatatattttatcggatacttataagataatcgacagata 16343127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 451 - 680
Target Start/End: Complemental strand, 27164258 - 27164037
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| ||||||||||||||  ||||  || ||||||||||||  ||||||||  |||  || | ||||||| |   |||||||||||||||||||||||    
T  27164258 agtatcggaattaattatttacatttttaaaatatattttatctgatacttattggatactccatagatacacaaggatacttataagatacttcacata 27164159  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 650  Q
     ||||||||| ||| |||       |||| || ||||||||||| |   |||||  ||||||| | ||||||||||||||||||||| ||||||| ||||    
T  27164158 tacgtatcctagaa-aaga------tgaaggg-aaaaaagtgagacaacgttgtagaaattcagtagagatgtatatgattcaattttagatatgcatca 27164067  T
Q  651 gtataattgtttttcgattaaccaattaaa 680  Q
     ||||||| ||| ||||| ||||| |||||    
T  27164066 atataattatttctcgatgaaccacttaaa 27164037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1116 - 1255
Target Start/End: Complemental strand, 37983597 - 37983459
Alignment:
Q  1116 tgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatt 1215  Q
    |||||||||| |  |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |    
T  37983597 tgaaaagaaatccgaagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact 37983499  T
Q  1216 tgtggtaacaaattcatagaagccaacccattcatctctg 1255  Q
    ||||||||| ||| |||||||||||| |||||||||||||    
T  37983498 tgtggtaactaatgcatagaagccaatccattcatctctg 37983459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 719 - 829
Target Start/End: Complemental strand, 53530673 - 53530563
Alignment:
Q  719 agattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 818  Q
    ||||||||| |||||||| |||||||| ||||| ||||||||||||| | || | | || | |||  |||| |||||||||||||| |||||||||||||    
T  53530673 agattcaattaatcaatattaaacaaaatttgtgttgagttcttttaataatacttctgctaatatcataagatatgaatgaaaatcgaatatgatttat 53530574  T
Q  819 ataaaaacttt 829  Q
    |  ||||||||    
T  53530573 acgaaaacttt 53530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1130 - 1255
Target Start/End: Complemental strand, 17688342 - 17688218
Alignment:
Q  1130 aagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatttgtggtaacaaatt 1229  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |||||||||| |||     
T  17688342 aagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaacttgtggtaactaatg 17688244  T
Q  1230 catagaagccaacccattcatctctg 1255  Q
    |||||||||||| |||||||||||||    
T  17688243 catagaagccaatccattcatctctg 17688218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 761 - 891
Target Start/End: Original strand, 24121239 - 24121372
Alignment:
Q  761 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattt 856  Q
    |||||||||||||||||||||| |  ||| |||||||| ||||||||||||| |||||   |||| ||    ||||||||||||||  ||| ||||||||    
T  24121239 ttttattgatgcatttgttgattccctaatatatgaataaaaatagaatatgttttattcgaaaattttatattttatattttgataacatatattattt 24121338  T
Q  857 ttctgtaaatgatgacttttataattatatagtat 891  Q
    ||  ||||||  |||||||||| ||||||||||||    
T  24121339 tt-ggtaaattgtgacttttatgattatatagtat 24121372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 453 - 557
Target Start/End: Original strand, 20819092 - 20819196
Alignment:
Q  453 tattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacataga 552  Q
    |||| |||| |||||||||  ||||||||||||||||||||  |||||||||||||  ||||| |||||| | | |||||||||| ||| |||||| |||    
T  20819092 tattagaataaattatttttctttaaaatatatattttatcggatacttataagatactcgacggatacacatagatacttataaaatatttcacaaaga 20819191  T
Q  553 cgtat 557  Q
     ||||    
T  20819192 ggtat 20819196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 641 - 722
Target Start/End: Original strand, 2111477 - 2111558
Alignment:
Q  641 atatgaatcagtataattgttttt-cgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagat 722  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||  |||| || |||||| |||||||    
T  2111477 atatgaatcactataattgttttttcgat-aaccaattaaaaattatgttttttgtggaataaagtaacgagagagaggagat 2111558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 599 - 681
Target Start/End: Complemental strand, 38489816 - 38489734
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||| || ||||| | ||||||||||||||||||||| ||||||| || | ||||||||||| ||||| ||||| ||||||    
T  38489816 tgttgtaaacattcagtagagatgtatatgattcaattttagatatgcataactataattgtttctcgatgaaccacttaaaa 38489734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 787 - 829
Target Start/End: Original strand, 43471932 - 43471974
Alignment:
Q  787 taacatatgaatgaaaatagaatatgatttatataaaaacttt 829  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  43471932 taacatatgaatgaaaatagaatatgatttatatgaaaacttt 43471974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 582 - 668
Target Start/End: Original strand, 45472615 - 45472701
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 668  Q
    |||||||||| || |  |||||| || ||||||| ||||||||||||||||||||| ||||||| |||| || |||||||| |||||    
T  45472615 gtaaaaaagttagacaatgttgtaaacattcaatagagatgtatatgattcaattttagatatgcatcactagaattgtttctcgat 45472701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 828 - 892
Target Start/End: Original strand, 16343146 - 16343210
Alignment:
Q  828 tttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    ||||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  16343146 tttttttattttgatcacatgtattatttttttgtaaattgcgacttttatgattatatagtatt 16343210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 581 - 668
Target Start/End: Complemental strand, 20369354 - 20369268
Alignment:
Q  581 ggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 668  Q
    |||||||||||||  |  ||||||||||||| | | ||||||||||||||||||||| |||| || |||| ||||||||||| |||||    
T  20369354 ggtaaaaaagtgatacaatgttgtgaaaattaatttgagatgtatatgattcaattttagat-tgcatcaatataattgtttctcgat 20369268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 787 - 858
Target Start/End: Complemental strand, 1341622 - 1341547
Alignment:
Q  787 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 858  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    |||| |||||||||| | ||||||||||||    
T  1341622 taacatatgaatgaaaataaaatatgttttatatgaaaactttacattttttattttgatcacgtgtattattttt 1341547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 619 - 681
Target Start/End: Original strand, 36504873 - 36504935
Alignment:
Q  619 gatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||||| |||||||| ||||||| |||| || |||||||| ||||| ||||||||||||    
T  36504873 gatgtatatggttcaattttagatatgcatcactagaattgtttctcgatgaaccaattaaaa 36504935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 616 - 681
Target Start/End: Complemental strand, 20179106 - 20179041
Alignment:
Q  616 ggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||||||||||||||||| ||||||| ||||||  |||||||| | ||| ||||| ||||||    
T  20179106 ggagatgtatatgattcaattttagatatgtatcagttgaattgtttcttgatgaaccacttaaaa 20179041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 576 - 680
Target Start/End: Original strand, 40614831 - 40614935
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| |||||||||||||| |  | |||| |||||||| | |||||||||||| |||||||| ||||||  |||| || | |||||| ||||| |||||     
T  40614831 tgaaaggtaaaaaagtgagacaatattgtaaaaattcattagagatgtatatggttcaattttagatatacatcattagagttgtttctcgatgaaccac 40614930  T
Q  676 ttaaa 680  Q
    |||||    
T  40614931 ttaaa 40614935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 459 - 502
Target Start/End: Original strand, 8913383 - 8913426
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatactta 502  Q
    ||||||||||||||||||||||| |||||||||||  |||||||    
T  8913383 aattaattattttaatttaaaatgtatattttatcggatactta 8913426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 829 - 892
Target Start/End: Complemental strand, 36172081 - 36172019
Alignment:
Q  829 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  36172081 ttttttattttgatcacatgtattattttt-tgtaaattgcgacttttatgattatatagtatt 36172019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 451 - 558
Target Start/End: Complemental strand, 39615268 - 39615162
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    |||||| |||||||||||||||||||  | || | |||||||  ||||||| ||||||  || ||||||||| |   ||||||||||||||||||||| |    
T  39615268 agtatttgaattaattattttaattttta-taaacattttatggaatacttgtaagatactccacagatacacaatgatacttataagatacttcacaaa 39615170  T
Q  551 gacgtatc 558  Q
     |||||||    
T  39615169 tacgtatc 39615162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 462 - 492
Target Start/End: Original strand, 27768115 - 27768145
Alignment:
Q  462 taattattttaatttaaaatatatattttat 492  Q
    |||||||||||||||||||||||||||||||    
T  27768115 taattattttaatttaaaatatatattttat 27768145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 35296463 - 35296524
Alignment:
Q  607 aaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 668  Q
    ||||||| | ||||| |||| |||||||||| ||||||| || ||||||||||||| |||||    
T  35296463 aaattcagtagagatatatacgattcaattttagatatgcataagtataattgtttctcgat 35296524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 827 - 892
Target Start/End: Original strand, 35433483 - 35433547
Alignment:
Q  827 ttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    |||||| |||||||||| |||||||||||||| |||||||   || |||||| |||||||||||||    
T  35433483 ttttttttattttgatcacatgtattattttt-tgtaaatcgcgatttttatgattatatagtatt 35433547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 1e-84; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 576 - 892
Target Start/End: Original strand, 37231785 - 37232104
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||| | ||||||||||||||||    
T  37231785 tgaagggtaaaaaagtgagattgtgttgtgaaaattcaatggagatgtatacgattcaatttaagatatgaatcacagtaaatatttttcgattaaccaa 37231884  T
Q  676 ttaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatt 775  Q
    |||||||||||||||||||| |||||||| || |||||| |||| ||| ||| |||||| | |||||||||||||| |||||||||||||||||||||||    
T  37231885 ttaaaaattatgtttttggttgatgaaagtaacgagagaaaggaaattaaattaatcaacattaaacaaactttgttttgagttcttttattgatgcatt 37231984  T
Q  776 tgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatga 871  Q
    ||||||||   |||||||| ||||||||||||||||||||||||  |||| ||    |||| || ||||||| ||| |||||||||| |||||||  |||    
T  37231985 tgttgatatcctaacatataaatgaaaatagaatatgatttatacgaaaaatttacattttttactttgatcacatatattattttt-tgtaaattgtga 37232083  T
Q  872 cttttataattatatagtatt 892  Q
    |||||||  ||||||||||||    
T  37232084 cttttatgcttatatagtatt 37232104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 7e-77
Query Start/End: Original strand, 459 - 858
Target Start/End: Complemental strand, 9136950 - 9136558
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    |||||||||||||||||||||||| |||||||||    || |||||||||  |||||| ||| | | | |||||||||| |||||||||| |||||||||    
T  9136950 aattaattattttaatttaaaataaatattttattgg-tatttataagatattcgacatatatacatagatacttataacatacttcacagagacgtatc 9136852  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 658  Q
    |||||| ||        |||| ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||| ||| |||||| |||||||    
T  9136851 ctggaaaaa-------atgaagggtaaaaaagtgagattgtgttgtgaaaattcaatggagacatatatgattcaatttaaaataagaatcactataatt 9136759  T
Q  659 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagt 758  Q
    ||||||||||||||||||| |||||||||  ||| ||||||||||| || |||||| | |||||||||| ||| || | |||| ||| ||| | |||| |    
T  9136758 gtttttcgattaaccaatt-aaaattatg--tttagtggatgaaagtaacgagagagatgagattcaataaattaacaataaataaattttattttgaat 9136662  T
Q  759 tcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattat 854  Q
    ||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  |||| ||    |||| |||||||||| |||||||| |    
T  9136661 tctcttattgatgcatttgttgatatcataacatatgaatgaaaatagaatatgatttatacgaaaattttacattttttattttgatcacatgtatttt 9136562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 1e-69
Query Start/End: Original strand, 453 - 899
Target Start/End: Original strand, 14179948 - 14180402
Alignment:
Q  453 tattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacataga 552  Q
    |||||||| ||||||||||||||| ||||||||  ||||||  |||||||||||||  |||||| ||| |      |||||||||||||||||||| |||    
T  14179948 tattggaaataattattttaatttcaaatatat--tttatcggatacttataagatactcgacatatata------tacttataagatacttcacagaga 14180039  T
Q  553 cgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagt 652  Q
    |||||| ||||| ||        |||| ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |    
T  14180040 cgtatcttggaaaaa------aatgaagggtaaaaaagtgagaatgtgttttgaaaattcaatggagatgtatatgattcaatttaagatatgtatcact 14180133  T
Q  653 ataattgtttttcgattaaccaattaaaaattatgtttttggtggatga----------------------aagcaaagagagataggagattcaatcaa 730  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||                      ||| || |||||| | || ||||||||||    
T  14180134 ataatt-tttttcgattaaccaattaaaaattatgtttttggtggatgaaagtaacgtttttggtggatgaaagtaacgagagagatgaaattcaatcaa 14180232  T
Q  731 tcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt-- 828  Q
    |||| | ||||||||||||||  ||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||  |||| ||      
T  14180233 tcaacattaaacaaactttgt--tgagttcttttattgatgcatttgttgatatcctaacttatgaatgaaaatagaatatgatttatacgaaaaattta 14180330  T
Q  829 --ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaagggt 899  Q
      | || |||||||||| |||| ||||||||| |||||||  |||||||||| |||| |||||||| ||||||    
T  14180331 catattttattttgatcacatgcattattttt-tgtaaattgtgacttttatgattaaatagtattgaagggt 14180402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 633 - 829
Target Start/End: Complemental strand, 2813829 - 2813633
Alignment:
Q  633 aatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatc 732  Q
    ||||||||||| |||||| ||||||| ||||||||||||| ||||||| |||||  |||||||||||||||| || ||||||  ||||||| ||||||||    
T  2813829 aatttaagatacgaatcactataattatttttcgattaacaaattaaatattataattttggtggatgaaagtaacgagagaggggagatttaatcaatc 2813730  T
Q  733 aatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 829  Q
    || | |||||||||||||| ||||||||||||||||||  |||||||||||   ||||||||||||||||||||||||||||||||| |||||||||    
T  2813729 aacattaaacaaactttgttttgagttcttttattgatatatttgttgatatcctaacatatgaatgaaaatagaatatgatttatacaaaaacttt 2813633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 652 - 783
Target Start/End: Original strand, 11558763 - 11558894
Alignment:
Q  652 tataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgt 751  Q
    |||||||  |||||||||||| ||||||||| ||| ||||||||||||||||| ||  |||| || |||||||||| |||||| | |||||||| |||||    
T  11558763 tataattaattttcgattaactaattaaaaaatatatttttggtggatgaaagtaagaagagttatgagattcaattaatcaacattaaacaaattttgt 11558862  T
Q  752 attgagttcttttattgatgcatttgttgata 783  Q
     |||| ||||||||||| ||||||||||||||    
T  11558863 tttgatttcttttattgttgcatttgttgata 11558894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 582 - 765
Target Start/End: Complemental strand, 18928668 - 18928485
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||| |||| |  |||||| |||||| ||| ||||||||||||||||||||| ||||||| ||||||| |||||||| ||||| ||||| || |||    
T  18928668 gtaaaaaattgagacaatgttgtaaaaattgaattgagatgtatatgattcaattttagatatgcatcagtagaattgtttctcgatgaaccactt-aaa 18928570  T
Q  682 attatgtttttggt-ggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttctttta 765  Q
    ||||| ||||| || |||||||   || |||||| | | |||||| | |||||||| |||| ||| ||||| |||||||||||||    
T  18928569 attatattttttgtgggatgaagataacgagagagatgtgattcagttaatcaatattaaataaaatttgtgttgagttctttta 18928485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 459 - 644
Target Start/End: Original strand, 35536834 - 35537012
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| | |  || ||| ||||| |||||||||| ||||||| |||||||| ||| |||    
T  35536834 aattaattattttaatttaaaatatatattttatagaatacttatacggtactcaacaaatacacacaaatacttttaagatatttcacatatacgcatc 35536933  T
Q  559 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatat 644  Q
    || ||| ||        ||||||||||||||||||| ||   || |||||| ||||||||| |||||| |||||||||| ||||||    
T  35536934 cttgaaaaa------aatgaatggtaaaaaagtgagactcaattatgaaaa-tcaatggaggtgtataagattcaatttgagatat 35537012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 451 - 534
Target Start/End: Complemental strand, 2813971 - 2813888
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatactta 534  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||  ||||| |||||| |||||||||||    
T  2813971 agtattggaattaattattttaatttaaaatatatattttataggatacttataagatactcgacggatacacacaaatactta 2813888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 599 - 673
Target Start/End: Original strand, 12006746 - 12006820
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaacc 673  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| |||| || |||||||||| ||| ||||    
T  12006746 tgttgtgaaaattcagtggagatgtatatgattcaattttagatatgcatcactagaattgttttttgatgaacc 12006820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 718 - 829
Target Start/End: Complemental strand, 31431359 - 31431248
Alignment:
Q  718 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgattta 817  Q
    |||||||||  |||||| | || ||||| ||||| ||||||||||||| |||||  | ||| ||||   ||||||||||||||||||| |||||||||||    
T  31431359 gagattcaaataatcaagattagacaaaatttgtgttgagttcttttaatgatgtttctgtggatatcttaacatatgaatgaaaatataatatgattta 31431260  T
Q  818 tataaaaacttt 829  Q
    ||| ||||||||    
T  31431259 tatgaaaacttt 31431248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 459 - 521
Target Start/End: Original strand, 11558585 - 11558647
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatac 521  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||||  |||||||||||    
T  11558585 aattaattatttaaatttaaaatatatatcttatcgaatacttataagatattcgacagatac 11558647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 458 - 681
Target Start/End: Original strand, 25429920 - 25430137
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    |||||||||||||||||||  || | |||| |||    ||||||||| ||| ||| ||||||||| |   |||||||||||||||||| |||| | ||||    
T  25429920 gaattaattattttaatttttaaaaaatatattaatggatacttatatgataatccacagatacacaaggatacttataagatacttcgcatatatgtat 25430019  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 657  Q
    ||| ||| |||       |||| |||||||||||||| |  |||||| ||||||||    |||| ||||||||||||||| ||||||| || |||| |||    
T  25430020 cctagaaaaaga------tgaagggtaaaaaagtgagacaatgttgtaaaaattcatgacagatatatatgattcaattttagatatgcattagtagaat 25430113  T
Q  658 tgtttttcgattaaccaattaaaa 681  Q
    |||||  |||| ||||| ||||||    
T  25430114 tgtttcacgatgaaccacttaaaa 25430137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 582 - 681
Target Start/End: Original strand, 6166450 - 6166549
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||| |  |||||| |||||||| |  | |||||||||||||||||| ||||||| ||||||||||||| || ||||| || || ||||||    
T  6166450 gtaaaaaagtgagacaatgttgtaaaaattcattataaatgtatatgattcaattttagatatgcatcagtataattgattctcgatgaaacacttaaaa 6166549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 528 - 681
Target Start/End: Original strand, 32855987 - 32856133
Alignment:
Q  528 atacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatat 627  Q
    ||||||||||||||||||||| | ||||||||| ||| |||       ||||  ||||||||| ||| |  |||||| || ||||| | |||||||||||    
T  32855987 atacttataagatacttcacagatacgtatcctagaaaaaga------tgaagagtaaaaaagcgagacaatgttgtaaacattcagtagagatgtatat 32856080  T
Q  628 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||||| ||||||| |||| || |||||||| ||||| ||||| ||||||    
T  32856081 gattcaattttagatatg-atcactagaattgtttctcgatgaaccacttaaaa 32856133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 761 - 892
Target Start/End: Complemental strand, 39297637 - 39297500
Alignment:
Q  761 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattt 856  Q
    |||||||||| ||||||||||||   ||| |||| |||||||||| ||||| || | || ||||||||    |||| ||||||||||  |||||||||||    
T  39297637 ttttattgatacatttgttgatatcctaatatataaatgaaaataaaatataatgtttacaaaaactttaaattttttattttgatcatatgtattattt 39297538  T
Q  857 tt--ctgtaaatgatgacttttataattatatagtatt 892  Q
    ||   |||||||  |||||||||| |||||||||||||    
T  39297537 tttgttgtaaattgtgacttttatgattatatagtatt 39297500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 653 - 734
Target Start/End: Complemental strand, 39297724 - 39297643
Alignment:
Q  653 ataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 734  Q
    |||||| ||||||||| | ||||||||||||||||||| | |||||||||   || |||||| |  ||||||||||||||||    
T  39297724 ataattatttttcgatgagccaattaaaaattatgtttattgtggatgaagataatgagagagacaagattcaatcaatcaa 39297643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 761 - 856
Target Start/End: Original strand, 22470724 - 22470822
Alignment:
Q  761 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt---tttatattttgatcgcatgtattattt 856  Q
    ||||| |||||  ||||||||||   |||||||  |||||| |||||||||||||||||  ||||||||   ||| |||||||||| ||||||||||||    
T  22470724 ttttaatgatgtttttgttgatatcctaacatagaaatgaatatagaatatgatttatacgaaaactttatatttttattttgatcacatgtattattt 22470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 585 - 679
Target Start/End: Original strand, 13003382 - 13003474
Alignment:
Q  585 aaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaa 679  Q
    |||||||||| |  ||||||  |||||||||  |||||||||||||||||||| ||||||| || | || |||||||| ||||| || |||||||    
T  13003382 aaaaagtgagacaatgttgtagaaattcaat--agatgtatatgattcaattttagatatgcataactagaattgtttctcgatgaatcaattaa 13003474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 459 - 550
Target Start/End: Original strand, 43100915 - 43101006
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||||||||||||||| |||| || |||||| ||  |||||||||||||  || ||| ||||| ||||||| | | |||||| ||||||||    
T  43100915 aattaattattttaattgaaaaaatttattttgtctgatacttataagatgttccacatatacacacaaatattcaaaagataattcacata 43101006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 584 - 662
Target Start/End: Original strand, 18320728 - 18320805
Alignment:
Q  584 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 662  Q
    ||||||||||| |  |||||||||| || | ||||||||||||||||||||||| ||||||| || |||| || |||||    
T  18320728 aaaaaagtgagacaatgttgtgaaattt-agtggagatgtatatgattcaattttagatatgcataagtagaaatgttt 18320805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 599 - 681
Target Start/End: Complemental strand, 23877482 - 23877400
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||| || ||||| | ||||| ||||||||||||||| ||||||| || | || ||||||||| |||| ||||| ||||||    
T  23877482 tgttgtaaacattcagtagagatatatatgattcaattttagatatgcatgactagaattgttttccgatgaaccacttaaaa 23877400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 11789693 - 11789624
Alignment:
Q  371 cccggatactccataatagaaacgtacccgtatcatatacatattagataccgatactctacggatactc 440  Q
    ||||||||||||| ||  || |||| |||||| || |||| ||| |||||||||||||| ||||||||||    
T  11789693 cccggatactccaaaacggagacgtgcccgtaccagatacgtatcagataccgatactccacggatactc 11789624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 17748970 - 17748925
Alignment:
Q  617 gagatgtatatgattcaatttaagatatgaatcagtataattgttt 662  Q
    |||||||||||||||||||||| |||||| |||| || ||||||||    
T  17748970 gagatgtatatgattcaatttatgatatgcatcactagaattgttt 17748925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 788 - 825
Target Start/End: Original strand, 32579149 - 32579186
Alignment:
Q  788 aacatatgaatgaaaatagaatatgatttatataaaaa 825  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  32579149 aacatatgaaagaaaatagaatatgatttataaaaaaa 32579186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 2e-71; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-71
Query Start/End: Original strand, 587 - 892
Target Start/End: Original strand, 7732241 - 7732545
Alignment:
Q  587 aaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattat 686  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  7732241 aaagtgaggatgtgttgtgaaaattcaacggatatgtatatgattcaatttaagatatgaatcactataactgtttttcgattagccaattaaaaattat 7732340  T
Q  687 gtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatacta 786  Q
    |||||||||||||||||| |   ||||| |||||||| |||||||||| |  |||||||||| || || ||||||||||||||||||||| |||||| |     
T  7732341 gtttttggtggatgaaagta---agagagaggagatttaatcaatcaacatgaaacaaacttcgttttaagttcttttattgatgcatttattgatattc 7732437  T
Q  787 taacatatgaatgaaaatagaatatgatttatataaaa-----acttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataat 881  Q
    ||||||||||||||||||| |  |||||||||| ||||     || ||||| |||||||| | ||  |||||||||| | |||||  |||||||||| ||    
T  7732438 taacatatgaatgaaaatata--atgatttatacaaaaaatttacatttttttattttgaccacacatattattttt-tataaattgtgacttttatgat 7732534  T
Q  882 tatatagtatt 892  Q
    |||||||||||    
T  7732535 tatatagtatt 7732545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 458 - 714
Target Start/End: Original strand, 42990580 - 42990830
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 557  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||  |||||||||||| ||| ||||||||||||||||| ||| ||||||||    
T  42990580 gaattaattattttaatttaaaatatatattttattggatacttataagatactcgacagatacacacagatacttataagatactttacagagacgtat 42990679  T
Q  558 cctggaagaagnnnnnnntgaatggtaaaaaag-tgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataa 656  Q
    ||||||  ||        ||||  ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42990680 cctggacaaa------aatgaagtgtaaaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcactataa 42990773  T
Q  657 ttgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagaga 714  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||||| || ||||||    
T  42990774 ttgttgttcga-taactaattaaaaattatgtttttggtggatgaaagtaacgagaga 42990830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 450 - 751
Target Start/End: Original strand, 12118204 - 12118496
Alignment:
Q  450 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 549  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||| ||||| |||  |||||| ||||| ||| ||| |||||| |||||| |||     
T  12118204 gagtatcggaattaattattttaatttaaaaaatatattttatcgaatatttatacgatactcgacaaatacacacatatatttataatatactttacag 12118303  T
Q  550 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 649  Q
    | ||||||||||||| ||        |||| |||||||||||||   |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  12118304 atacgtatcctggaaaaa-------atgaagggtaaaaaagtgaa--tgtgttgtgaaaattcaatgaaaatgtatatgattcaatttaagatatgaatc 12118394  T
Q  650 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 749  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| | || || | |||  ||||||| |||| ||||| |||||||| |||    
T  12118395 agtataactgtttttcgattaactaattaaaaattatatttttggtggatgaaggtaatgaaaaatataagattcagtcaaccaatattaaacaaaattt 12118494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 576 - 798
Target Start/End: Original strand, 41634401 - 41634610
Alignment:
Q  576 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 675  Q
    |||| |||||||| |||||  ||||||||||||||||||||||||||||||| |||||||||||||||||              ||| ||||||||  ||    
T  41634401 tgaagggtaaaaaggtgagattgtgttgtgaaaattcaatggagatgtatatcattcaatttaagatatg--------------tttatcgattaattaa 41634486  T
Q  676 ttaaaaattatgtttttg-gtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcat 774  Q
    ||||||| ||| |||||| ||||||||| | || |||||| |||| |||||||||||||| | |||||||||||| | || |||||||||||||||||||    
T  41634487 ttaaaaactatttttttgtgtggatgaaggtaacgagagagaggacattcaatcaatcaacattaaacaaactttatttttagttcttttattgatgcat 41634586  T
Q  775 ttgttgatactataacatatgaat 798  Q
    ||||||||| | ||||||||||||    
T  41634587 ttgttgatattctaacatatgaat 41634610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 586 - 828
Target Start/End: Complemental strand, 12848545 - 12848318
Alignment:
Q  586 aaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatta 685  Q
    ||||||||| || ||||||||||||||||||||||||||||| |||||||             || |||||||||||||||||||| ||||| |||||||    
T  12848545 aaaagtgagtctttgttgtgaaaattcaatggagatgtatataattcaat-------------caatataattgtttttcgattaatcaatttaaaatta 12848459  T
Q  686 tgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgata 783  Q
    |||||||| |||||||  | ||  |||||||||    ||||||||||| || | |||||||||||||| |||||||| |||||||||| ||||||||||     
T  12848458 tgtttttgttggatgagggtaacgagagagata----attcaatcaattaacattaaacaaactttgttttgagttcctttattgatgtatttgttgatg 12848363  T
Q  784 ctataacatatgaatgaaaatagaatatgatttatataaaaactt 828  Q
       ||| |||||||| |||||||||||| |||||||  |||||||    
T  12848362 tcctaatatatgaataaaaatagaatataatttatacgaaaactt 12848318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 585 - 734
Target Start/End: Original strand, 27972008 - 27972159
Alignment:
Q  585 aaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatt 684  Q
    ||||||||||  ||| ||||||||||| |||  ||||||||| |||||||||||||||||||||| ||| |||| ||||| || ||||||||| |||| |    
T  27972008 aaaaagtgagtttgtattgtgaaaatttaataaagatgtataagattcaatttaagatatgaatcggtaaaattattttttgactaaccaattcaaaact 27972107  T
Q  685 atgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaa 734  Q
    ||||||||||||||| || | ||  ||||||| |||||||||||||||||||    
T  27972108 atgtttttggtggataaaggtaacgagagagaaaggagattcaatcaatcaa 27972159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 451 - 634
Target Start/End: Original strand, 39329411 - 39329588
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| ||||||||||||||||||||| |||||||||||||||  ||| |||||||||  |||||| ||||| ||| |||||||||||||||||||||||    
T  39329411 agtatcggaattaattattttaatttataatatatattttatcggatatttataagatactcgacaaatacacacatatacttataagatacttcacata 39329510  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaa 634  Q
     |  ||  || ||| ||        |||| ||||||||||||||  ||||| ||||||||| |||||||||||||| |||||||    
T  39329511 tatatacactcgaaaaa------aatgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 39329588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 446 - 734
Target Start/End: Complemental strand, 16756312 - 16756032
Alignment:
Q  446 catagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttc 545  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||| || ||| ||  |  ||| ||||| |   |||||||||||||| ||     
T  16756312 catagagtatcagaattaattattttaatttaaaatatatattttatcagatatttgtaacatacttcacaaatacataatgatacttataagatatttt 16756213  T
Q  546 acatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatg 645  Q
    || || | ||||||| ||| |         |||| |  ||||||||||| |  ||||| |||| ||||| |||||||||||||||||||||| |||||||    
T  16756212 acgtatatgtatcctagaaaa-------tatgaaggacaaaaaagtgagacaatgttgcgaaagttcaacggagatgtatatgattcaattttagatatg 16756120  T
Q  646 aatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 734  Q
     || |||| |||||||| |||||| |||| || ||||||||  || | ||||||||| | ||  ||||| | |||||||||| ||||||    
T  16756119 cattagtaaaattgtttatcgattgaccactt-aaaattataattcttgtggatgaaggtaacaagagagaagagattcaattaatcaa 16756032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 582 - 765
Target Start/End: Complemental strand, 2628069 - 2627883
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||| | ||||||| || ||||| | ||||||||||||||||||||| ||||||| || | || |||||||| ||||| ||||| || |||    
T  2628069 gtaaaaaagtgagacagtgttgtaaacattcagtagagatgtatatgattcaattttagatatgcataattagaattgtttatcgatgaaccactt-aaa 2627971  T
Q  682 attatgtttttggtggatgaaagcaaagagagat----aggagattcaatcaatcaatagtaaacaaactttgtattgagttctttta 765  Q
    |||||  |||  ||||||||| | ||||||||||    ||| |||||||| |||||| | |||| ||| ||||| ||||||| |||||    
T  2627970 attatactttctgtggatgaaggtaaagagagatagagaggtgattcaattaatcaacattaaataaaatttgtgttgagttatttta 2627883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 599 - 681
Target Start/End: Original strand, 5836542 - 5836624
Alignment:
Q  599 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||||| || |||||||||||||||||||| | ||||| ||| |||||||||||| ||||| ||||| ||||||    
T  5836542 tgttgtgaaaattcagtgaagatgtatatgattcaattttatatatgtatcggtataattgtttctcgatgaaccacttaaaa 5836624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 451 - 681
Target Start/End: Complemental strand, 29231309 - 29231085
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||  ||||||||  |||  || ||| ||||| |   ||| || |||||||||||||| |    
T  29231309 agtatcggaattaattattttaatttttaataaatattttatcggatacttatgtgatactccacatatacacaaggatatttttaagatacttcacaga 29231210  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 650  Q
     ||||||||| ||| |||       ||||   |||||||||||| |  |||||| |||||||| |  |||||||||||| ||||||| ||||||| ||||    
T  29231209 cacgtatcctagaaaaaga------tgaagactaaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgactcaattttagatatgcatca 29231116  T
Q  651 gtataattgtttttcgattaaccaattaaaa 681  Q
     || |||||||| ||||| || || ||||||    
T  29231115 atagaattgtttctcgatgaaacacttaaaa 29231085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 582 - 765
Target Start/End: Original strand, 26564971 - 26565153
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    |||||||||||||    |||||| || ||||||| |  |||||||||||||||||| ||||||| |||| ||||||||||| | ||| ||||| || |||    
T  26564971 gtaaaaaagtgagataatgttgtaaacattcaatagcaatgtatatgattcaattttagatatgtatcactataattgtttcttgataaaccactt-aaa 26565069  T
Q  682 attatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttctttta 765  Q
    |||||  || | ||||||||| | || |||||  ||| |||||| | |||||||| || | ||| ||| | |||||||||||||    
T  26565070 attatacttatcgtggatgaaggtaaggagagggaggtgattcagttaatcaatattagataaaatttatgttgagttctttta 26565153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 742 - 816
Target Start/End: Original strand, 39329596 - 39329670
Alignment:
Q  742 caaactttgtattgagttcttttattgatgcatttgttgata-ctataacatatgaatgaaaatagaatatgattt 816  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  39329596 caaactttgttttgaattcttttatcgatgcatttgttgatatcta-aatatatgaatgaaaatagaatataattt 39329670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 729 - 819
Target Start/End: Complemental strand, 8802777 - 8802687
Alignment:
Q  729 aatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 819  Q
    |||||||| |||||||| ||||| ||||||||||||  |||||| | | ||||||   |||||||||||| |||||| |||||||||||||    
T  8802777 aatcaatattaaacaaaatttgtgttgagttcttttgatgatgcttctattgatatcctaacatatgaataaaaatataatatgatttata 8802687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 601 - 660
Target Start/End: Complemental strand, 26016672 - 26016613
Alignment:
Q  601 ttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgt 660  Q
    |||||| |||||||| ||||||||||||||||| |||| ||||||||| |||| ||||||    
T  26016672 ttgtgagaattcaatagagatgtatatgattcagtttaggatatgaattagtagaattgt 26016613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 788 - 888
Target Start/End: Original strand, 41634663 - 41634766
Alignment:
Q  788 aacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatta 883  Q
    ||||||||||||||||||||||||||||||||  ||||| |    |||| | |||||||| |||||||| || || | ||||| ||||||||||| ||||    
T  41634663 aacatatgaatgaaaatagaatatgatttatacgaaaacattacattttttgttttgatcacatgtatt-ttcttttttaaattatgacttttatgatta 41634761  T
Q  884 tatag 888  Q
    |||||    
T  41634762 tatag 41634766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 623 - 681
Target Start/End: Complemental strand, 13407326 - 13407268
Alignment:
Q  623 tatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||||| ||||||  |||||||||||||||| ||||| ||||| ||||||    
T  13407326 tatatgattcaattttagatatacatcagtataattgtttctcgatgaaccagttaaaa 13407268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 753 - 829
Target Start/End: Original strand, 36906776 - 36906852
Alignment:
Q  753 ttgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 829  Q
    ||||||||||||| | |||  ||||||||||   ||||| ||||||||||||| |||||| ||||||| ||||||||    
T  36906776 ttgagttcttttaataatgtttttgttgatatcctaacaaatgaatgaaaatataatatgctttatatgaaaacttt 36906852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 787 - 819
Target Start/End: Complemental strand, 39700923 - 39700891
Alignment:
Q  787 taacatatgaatgaaaatagaatatgatttata 819  Q
    |||||||||||||||||||||||||||||||||    
T  39700923 taacatatgaatgaaaatagaatatgatttata 39700891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 604 - 671
Target Start/End: Original strand, 7612609 - 7612676
Alignment:
Q  604 tgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaa 671  Q
    |||||||| | | ||||| |||||||||||||||||||||  ||||| ||||||||||| | ||||||    
T  7612609 tgaaaatttagtagagatttatatgattcaatttaagatagaaatcattataattgtttcttgattaa 7612676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 34764814 - 34764724
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 548  Q
    ||||||||||||| ||||| ||| | |||||||||| |||||||||| |||  || ||| ||||| |   ||||||||||| |||||||||    
T  34764814 gaattaattatttaaattttaaaaaaatattttatcgaatacttatatgatactccacaaatacacaaggatacttataaggtacttcaca 34764724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 459 - 560
Target Start/End: Original strand, 3387180 - 3387281
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 558  Q
    ||||||||||||||||||   | | ||| |||||||||||| ||||||||  |  || |||||| | ||||||||||||||| |||| || | |||||||    
T  3387180 aattaattattttaatttttgaaaaataatttatcaaatacatataagatacttcacggatacacaaaaatacttataagatgcttcgcaaatacgtatc 3387279  T
Q  559 ct 560  Q
    ||    
T  3387280 ct 3387281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 716 - 813
Target Start/End: Original strand, 5836653 - 5836750
Alignment:
Q  716 aggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatga 813  Q
    |||||||||||| |||||  | || | ||| ||||| ||||||||||||| |||||| | ||||||||   |||||| ||||||||| || |||||||    
T  5836653 aggagattcaattaatcaccattagataaaatttgtgttgagttcttttaatgatgcttatgttgatatcctaacatctgaatgaaagtacaatatga 5836750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 7732127 - 7732176
Alignment:
Q  459 aattaattattttaatttaaaatatatattttatcaaatacttataagat 508  Q
    ||||||||| ||| |||||||||||||||||||||  ||| |||||||||    
T  7732127 aattaattactttgatttaaaatatatattttatcggatatttataagat 7732176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 617 - 662
Target Start/End: Complemental strand, 31114070 - 31114025
Alignment:
Q  617 gagatgtatatgattcaatttaagatatgaatcagtataattgttt 662  Q
    ||||||||||||||||||||| ||||||| || |||| ||||||||    
T  31114070 gagatgtatatgattcaattttagatatgcattagtaaaattgttt 31114025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 124; Significance: 4e-63; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 124; E-Value: 4e-63
Query Start/End: Original strand, 451 - 829
Target Start/End: Original strand, 394061 - 394425
Alignment:
Q  451 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 550  Q
    |||||| ||||||||||||||||||||||| |||||||||||   ||||| |||||||  |||||| || || ||| |||||||||||||| |||||| |    
T  394061 agtattagaattaattattttaatttaaaaaatatattttattggatactgataagatactcgacaaatgcacacatatacttataagatatttcacaaa 394160  T
Q  551 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 650  Q
    ||||||| ||| |||||        |||| |||||||  | | |  ||||||||||||||           ||||||||||| |||||||||||||||||    
T  394161 gacgtattctg-aagaa--aaaaaatgaagggtaaaattgcgggtttgtgttgtgaaaat-----------gtatatgattcgatttaagatatgaatca 394246  T
Q  651 gtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttg 750  Q
     ||||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||  ||| | ||||||||||||||||||| | |||||||| ||||    
T  394247 ctataattttttttcgattaaccaattaaaaatcatgtttttagtggatgaaagtaacaagaaagaggagattcaatcaatcaacattaaacaaattttg 394346  T
Q  751 tattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 829  Q
    | |||||||||| ||||||| ||||||||||||| |||||||| |||| |||||| |||| ||||||||  ||||||||    
T  394347 ttttgagttcttgtattgatccatttgttgataccataacataagaattaaaatataatacgatttatacgaaaacttt 394425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 58; Significance: 9e-24; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 392 - 668
Target Start/End: Original strand, 7727 - 8005
Alignment:
Q  392 acgtacccgtatcatatacatattagataccgatactctacggatactcac--------atccatagagtattggaattaattattttaatttaaaatat 483  Q
    ||||| |||||||  |||| ||| ||||||||||||||||||||||||| |        |||||   ||||| ||||||||||||||||||||  ||||     
T  7727 acgtatccgtatcggatacgtatcagataccgatactctacggatactcgcggatacgtatccacgaagtatcggaattaattattttaatttttaataa 7826  T
Q  484 atattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggt 583  Q
    |||||||||| |||||||||  |||  || ||||||||| |   |||||| |||||||||||||| | ||||||||| ||| |||       ||||  ||    
T  7827 atattttatcgaatacttatgtgatactccacagatacacaaggatacttctaagatacttcacagacacgtatcctagaaaaag------atgaagagt 7920  T
Q  584 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 668  Q
    ||||||||||| |  |||||| |||||||| |  |||||||||||| ||||||| ||||||| |||| || |||||||| |||||    
T  7921 aaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgactcaattttagatatgcatcaatagaattgtttctcgat 8005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 53708 - 53770
Alignment:
Q  458 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagata 520  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  53708 gaattaattcctttaatttaaaatatatattttatcggatacttataagataatcgacagata 53770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 827 - 892
Target Start/End: Original strand, 53789 - 53854
Alignment:
Q  827 ttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 892  Q
    |||||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  53789 ttttttttattttgatcacatgtattatttttttgtaaattgcgacttttatgattatatagtatt 53854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 582 - 681
Target Start/End: Original strand, 6176 - 6275
Alignment:
Q  582 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 681  Q
    ||||||||||||| |  |||||  || |||| || ||||||||||||||||||||  ||||||| || | || |||||||||| ||| ||||| ||||||    
T  6176 gtaaaaaagtgagacaatgttgcaaacattcgatagagatgtatatgattcaattatagatatgcataactagaattgttttttgatgaaccacttaaaa 6275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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