View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_10 (Length: 446)
Name: NF8249_low_10
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 37858287 - 37857984
Alignment:
| Q |
1 |
ctgttctgtggtcattgtagaattgtagttaagatggtgggtgagttgtttctttccttgtaggctatcaccttcaataaaattctatcatcatatggaa |
100 |
Q |
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| T |
37858287 |
ctgttctgtggtcattgtagaattgtagttaagatggtgggtgagttgtttctttccttgtaggctatcaccttcaataaaattctaccatcatatggaa |
37858188 |
T |
|
| Q |
101 |
tactataattatgcagatgtttaagttctgttaggtcatgtatacacatgttacgttgctttctctataaattaagtagctctattttacttgattttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858187 |
tactataattatgcagatgtttaagttctgttaggtcatgtatacacatgttacgttgctttctctataaattaagtagctctattttacttgattttct |
37858088 |
T |
|
| Q |
201 |
cttgaatgaaattacctgtacagataggatatatgtatgttattgtaattgtattatcatttatatttatattcaactggtgaagattgaagcattttac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858087 |
cttgaatgaaattacctgtacagataggatatatgtatgttaatgtaattgtattatcatttatatttatattcaactggtgaagattgaagcattttac |
37857988 |
T |
|
| Q |
301 |
ataa |
304 |
Q |
| |
|
|||| |
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| T |
37857987 |
ataa |
37857984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 313 - 430
Target Start/End: Complemental strand, 37857089 - 37856972
Alignment:
| Q |
313 |
taggcttagctatcattgtcagcaatgagtagtgcatatcatagcacatgtgattttctaccatcattccgctaagcttgggaaacaaaatttgcaatgt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
37857089 |
taggcttagctatcattgtcagcaatgagtagtgcatatcatagcacatgtgattttctactatcattccgctaagcttgtgaaacaaaatttgcaatgt |
37856990 |
T |
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| Q |
413 |
aagtagcttagaaattgc |
430 |
Q |
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|||||||||||||||||| |
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| T |
37856989 |
aagtagcttagaaattgc |
37856972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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