View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_14 (Length: 363)
Name: NF8249_low_14
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 68 - 345
Target Start/End: Original strand, 50594363 - 50594639
Alignment:
| Q |
68 |
agtagtcacaatcacaatgattaattaatgaactgaattcacgtgagcaatgtcactgccacgtacttaaaacatcttcactcttcaccgtttacattga |
167 |
Q |
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| T |
50594363 |
agtagtcacaatcacaatgattaattaatgaactgaattcacgtgagcaatgtcactgccacgtacttaaaacatcttcactcttcaccgtttacattga |
50594462 |
T |
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| Q |
168 |
tttcaattccaaaccagcaccgcatcactatccgaaatccttaattatccattcctacaatttttccgataactattactaatttccaaaaatattcaac |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50594463 |
tttcaattccaaaccagcaccgcatcactatccgaaatcc-taattatccattcctacaatttttccgataactattactaatttccaataatattcaac |
50594561 |
T |
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| Q |
268 |
gctataaattaaatatatttgtttcactagcacacacagaaaaagagaaagtgaaaacagagaaaccgacgataatgg |
345 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50594562 |
gctataaattaaatatatttgtttcactcgcacacacagaaaaagagaaagtgaaaacagagaaaccgacgataatgg |
50594639 |
T |
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