View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_17 (Length: 339)
Name: NF8249_low_17
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 49832196 - 49831859
Alignment:
| Q |
1 |
atttcataaggtttctcaaacatgattttaaggttgcatacttttat------------------atatagatatgtaaatcatgggctaaaactgattt |
82 |
Q |
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| T |
49832196 |
atttcataaggtttctcaaacatgattttaaggttgcatacttttatgatacaccatggttattaatatagatatgtaaatcatgggctaaaactgattt |
49832097 |
T |
|
| Q |
83 |
gatcatttgcccatcttatacaatcctttaattcaaacaaccaaacacgttgaattttcatcacgtttaccgttgagnnnnnnnnccttacgtttaacac |
182 |
Q |
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| T |
49832096 |
gatcatttgcccatcttatacaatcctttaattcaaacaaccaaacacgttgaattttcatcacgtttaacgttgagaaaaaaaaccttacgtttaacac |
49831997 |
T |
|
| Q |
183 |
tcatttccaaacatgcaatacaatgtttactttttagctttaatatattaagggtgaaaaatcaaatatgaaatattttgatgattttaaaaattgaagg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
49831996 |
tcatttccaaacatgcaatacaatgtttactttttagctttaatatattaagggtgaaaaatcaaatatgaaatattttgatgatgttaaagattgaagg |
49831897 |
T |
|
| Q |
283 |
agattgccttccattaacacaccattgtatatacaagt |
320 |
Q |
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| T |
49831896 |
agattgccttccattaacacaccattgtacatacaagt |
49831859 |
T |
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