View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8249_low_2 (Length: 865)

Name: NF8249_low_2
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8249_low_2
NF8249_low_2
[»] chr6 (21 HSPs)
chr6 (20-854)||(6723900-6724742)
chr6 (195-320)||(17533390-17533513)
chr6 (174-396)||(212003-212225)
chr6 (200-293)||(16109907-16110000)
chr6 (195-286)||(7495004-7495095)
chr6 (48-155)||(7495174-7495281)
chr6 (56-260)||(8485841-8486037)
chr6 (49-106)||(17533565-17533622)
chr6 (309-417)||(26545988-26546095)
chr6 (49-417)||(12311897-12312254)
chr6 (48-100)||(1929073-1929125)
chr6 (215-363)||(2988053-2988200)
chr6 (201-401)||(12283608-12283807)
chr6 (389-490)||(17533274-17533381)
chr6 (714-853)||(22000498-22000636)
chr6 (174-279)||(32340284-32340388)
chr6 (57-146)||(16109785-16109876)
chr6 (216-279)||(688087-688150)
chr6 (427-490)||(1929155-1929217)
chr6 (215-279)||(30928364-30928428)
chr6 (180-279)||(10229461-10229560)
[»] chr1 (32 HSPs)
chr1 (48-490)||(31183338-31183775)
chr1 (48-487)||(29488143-29488569)
chr1 (48-312)||(46594202-46594463)
chr1 (47-320)||(22791058-22791324)
chr1 (43-332)||(4073506-4073786)
chr1 (182-456)||(2136805-2137083)
chr1 (57-381)||(50461121-50461435)
chr1 (182-312)||(50709546-50709675)
chr1 (250-381)||(51273129-51273262)
chr1 (48-248)||(17936244-17936433)
chr1 (49-260)||(14286910-14287115)
chr1 (385-490)||(22790945-22791053)
chr1 (55-106)||(50709454-50709505)
chr1 (57-156)||(50727149-50727243)
chr1 (56-279)||(4973087-4973306)
chr1 (174-260)||(16122800-16122885)
chr1 (180-279)||(13558498-13558597)
chr1 (232-299)||(30193412-30193478)
chr1 (213-279)||(38682929-38682995)
chr1 (199-251)||(30902397-30902449)
chr1 (197-256)||(270965-271024)
chr1 (197-251)||(781883-781937)
chr1 (55-279)||(31513625-31513843)
chr1 (49-279)||(40693821-40694046)
chr1 (385-427)||(50709686-50709728)
chr1 (49-279)||(17116139-17116365)
chr1 (216-369)||(4966736-4966887)
chr1 (182-243)||(13643833-13643894)
chr1 (56-103)||(2136732-2136779)
chr1 (389-456)||(16123013-16123084)
chr1 (180-266)||(50726668-50726754)
chr1 (49-102)||(10443426-10443478)
[»] chr2 (32 HSPs)
chr2 (48-490)||(26352483-26352920)
chr2 (57-416)||(45388644-45388997)
chr2 (126-487)||(36925503-36925856)
chr2 (183-490)||(3353132-3353439)
chr2 (56-320)||(43355706-43355967)
chr2 (180-377)||(18858483-18858680)
chr2 (64-404)||(36525847-36526170)
chr2 (174-426)||(44986408-44986650)
chr2 (197-324)||(16496758-16496884)
chr2 (49-332)||(36467100-36467374)
chr2 (57-238)||(30776576-30776750)
chr2 (55-279)||(7017729-7017950)
chr2 (174-271)||(41323899-41323996)
chr2 (56-120)||(14749467-14749531)
chr2 (56-279)||(35298334-35298551)
chr2 (174-279)||(37272917-37273022)
chr2 (202-423)||(11457848-11458070)
chr2 (41-106)||(36925450-36925515)
chr2 (427-490)||(14749544-14749606)
chr2 (174-279)||(11562733-11562836)
chr2 (49-260)||(38221640-38221845)
chr2 (432-490)||(45389019-45389076)
chr2 (204-369)||(30485631-30485795)
chr2 (57-106)||(18858366-18858417)
chr2 (219-279)||(40498676-40498736)
chr2 (426-490)||(43344689-43344752)
chr2 (180-235)||(18561115-18561170)
chr2 (180-279)||(42794781-42794880)
chr2 (174-260)||(2788913-2788999)
chr2 (217-259)||(38140639-38140681)
chr2 (174-260)||(38558674-38558759)
chr2 (57-158)||(17328607-17328707)
[»] chr7 (27 HSPs)
chr7 (48-486)||(31396988-31397423)
chr7 (57-486)||(44797994-44798423)
chr7 (55-318)||(48138396-48138652)
chr7 (181-333)||(46192231-46192383)
chr7 (57-244)||(2483666-2483847)
chr7 (57-289)||(16817742-16817964)
chr7 (226-299)||(24699810-24699882)
chr7 (48-120)||(24699733-24699805)
chr7 (56-134)||(9229491-9229569)
chr7 (321-426)||(47277897-47278002)
chr7 (49-279)||(45648231-45648455)
chr7 (57-106)||(46192423-46192472)
chr7 (56-158)||(34471659-34471761)
chr7 (57-146)||(6562382-6562470)
chr7 (216-281)||(25482609-25482674)
chr7 (385-490)||(48138659-48138767)
chr7 (49-260)||(45492049-45492258)
chr7 (175-225)||(47277149-47277199)
chr7 (213-258)||(3094258-3094303)
chr7 (182-279)||(3751503-3751600)
chr7 (174-417)||(22201110-22201353)
chr7 (174-417)||(22236468-22236711)
chr7 (216-332)||(7857938-7858053)
chr7 (182-369)||(42040377-42040561)
chr7 (174-260)||(47843793-47843879)
chr7 (56-279)||(43495761-43495977)
chr7 (215-279)||(40836439-40836503)
[»] chr4 (32 HSPs)
chr4 (41-417)||(44746290-44746663)
chr4 (179-427)||(43770428-43770673)
chr4 (47-302)||(34075140-34075392)
chr4 (199-494)||(21619592-21619888)
chr4 (179-417)||(22198747-22198980)
chr4 (204-401)||(34733793-34733988)
chr4 (56-134)||(47724738-47724816)
chr4 (174-279)||(10037871-10037976)
chr4 (126-279)||(53586369-53586516)
chr4 (197-423)||(44987299-44987522)
chr4 (307-425)||(35823460-35823578)
chr4 (44-106)||(43770811-43770873)
chr4 (385-490)||(10632247-10632355)
chr4 (56-369)||(19721627-19721931)
chr4 (174-409)||(4775801-4776034)
chr4 (256-365)||(25204405-25204522)
chr4 (48-162)||(38948586-38948694)
chr4 (181-279)||(45774026-45774124)
chr4 (49-158)||(2295266-2295375)
chr4 (197-278)||(28102017-28102098)
chr4 (51-106)||(22199015-22199070)
chr4 (56-142)||(21619458-21619544)
chr4 (174-260)||(27675450-27675536)
chr4 (174-272)||(35823602-35823700)
chr4 (180-257)||(35103543-35103620)
chr4 (427-490)||(47724673-47724735)
chr4 (219-369)||(53018485-53018632)
chr4 (57-116)||(54163430-54163489)
chr4 (56-106)||(6255296-6255346)
chr4 (57-147)||(47923080-47923170)
chr4 (56-101)||(2243042-2243087)
chr4 (386-448)||(38947679-38947745)
[»] chr3 (41 HSPs)
chr3 (57-427)||(31489382-31489749)
chr3 (56-406)||(24611339-24611686)
chr3 (57-427)||(50387090-50387442)
chr3 (56-312)||(43471675-43471921)
chr3 (59-305)||(47014160-47014402)
chr3 (47-332)||(24120952-24121235)
chr3 (218-490)||(21842588-21842863)
chr3 (218-490)||(21858231-21858504)
chr3 (174-332)||(1341626-1341786)
chr3 (318-490)||(47014501-47014676)
chr3 (318-490)||(21853839-21854013)
chr3 (48-160)||(2111315-2111426)
chr3 (51-134)||(35433397-35433480)
chr3 (48-134)||(12176632-12176718)
chr3 (197-355)||(20619294-20619452)
chr3 (56-134)||(36172084-36172162)
chr3 (244-380)||(8913548-8913685)
chr3 (180-279)||(29324097-29324196)
chr3 (57-118)||(16343066-16343127)
chr3 (49-278)||(27164037-27164258)
chr3 (714-853)||(37983459-37983597)
chr3 (317-427)||(53530563-53530673)
chr3 (728-853)||(17688218-17688342)
chr3 (359-489)||(24121239-24121372)
chr3 (51-155)||(20819092-20819196)
chr3 (239-320)||(2111477-2111558)
chr3 (197-279)||(38489734-38489816)
chr3 (385-427)||(43471932-43471974)
chr3 (180-266)||(45472615-45472701)
chr3 (426-490)||(16343146-16343210)
chr3 (179-266)||(20369268-20369354)
chr3 (385-456)||(1341547-1341622)
chr3 (217-279)||(36504873-36504935)
chr3 (214-279)||(20179041-20179106)
chr3 (174-278)||(40614831-40614935)
chr3 (57-100)||(8913383-8913426)
chr3 (427-490)||(36172019-36172081)
chr3 (49-156)||(39615162-39615268)
chr3 (60-90)||(27768115-27768145)
chr3 (205-266)||(35296463-35296524)
chr3 (425-490)||(35433483-35433547)
[»] chr8 (23 HSPs)
chr8 (174-490)||(37231785-37232104)
chr8 (57-456)||(9136558-9136950)
chr8 (51-497)||(14179948-14180402)
chr8 (231-427)||(2813633-2813829)
chr8 (250-381)||(11558763-11558894)
chr8 (180-363)||(18928485-18928668)
chr8 (57-242)||(35536834-35537012)
chr8 (49-132)||(2813888-2813971)
chr8 (197-271)||(12006746-12006820)
chr8 (316-427)||(31431248-31431359)
chr8 (57-119)||(11558585-11558647)
chr8 (56-279)||(25429920-25430137)
chr8 (180-279)||(6166450-6166549)
chr8 (126-279)||(32855987-32856133)
chr8 (359-490)||(39297500-39297637)
chr8 (251-332)||(39297643-39297724)
chr8 (359-454)||(22470724-22470822)
chr8 (183-277)||(13003382-13003474)
chr8 (57-148)||(43100915-43101006)
chr8 (182-260)||(18320728-18320805)
chr8 (197-279)||(23877400-23877482)
chr8 (215-260)||(17748925-17748970)
chr8 (386-423)||(32579149-32579186)
[»] chr5 (25 HSPs)
chr5 (185-490)||(7732241-7732545)
chr5 (56-312)||(42990580-42990830)
chr5 (48-349)||(12118204-12118496)
chr5 (174-396)||(41634401-41634610)
chr5 (184-426)||(12848318-12848545)
chr5 (183-332)||(27972008-27972159)
chr5 (49-232)||(39329411-39329588)
chr5 (44-332)||(16756032-16756312)
chr5 (180-363)||(2627883-2628069)
chr5 (197-279)||(5836542-5836624)
chr5 (49-279)||(29231085-29231309)
chr5 (180-363)||(26564971-26565153)
chr5 (340-414)||(39329596-39329670)
chr5 (327-417)||(8802687-8802777)
chr5 (199-258)||(26016613-26016672)
chr5 (386-486)||(41634663-41634766)
chr5 (221-279)||(13407268-13407326)
chr5 (351-427)||(36906776-36906852)
chr5 (385-417)||(39700891-39700923)
chr5 (202-269)||(7612609-7612676)
chr5 (56-146)||(34764724-34764814)
chr5 (57-158)||(3387180-3387281)
chr5 (314-411)||(5836653-5836750)
chr5 (57-106)||(7732127-7732176)
chr5 (215-260)||(31114025-31114070)
[»] scaffold0001 (1 HSPs)
scaffold0001 (49-427)||(394061-394425)
[»] scaffold0565 (1 HSPs)
scaffold0565 (49-266)||(7794-8005)
[»] scaffold0051 (2 HSPs)
scaffold0051 (56-118)||(53708-53770)
scaffold0051 (425-490)||(53789-53854)
[»] scaffold0495 (1 HSPs)
scaffold0495 (180-279)||(6176-6275)


Alignment Details
Target: chr6 (Bit Score: 649; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 20 - 854
Target Start/End: Complemental strand, 6724742 - 6723900
Alignment:
Q  20 cgatactctacggatactcacatccatagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatac 119  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  6724742 cgatactctacggatactcacatccacagattattggaattaattattttaatttaaaatatatattttatcgaatacttataagatcctcgacaaatac 6724643  T
Q  120 aaacaaatacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaatt-caatggaga 218  Q
    | |||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||| |||||||||    
T  6724642 acacaaatacttataagatacttcacatagacgtatcctggaagga-aaaaaaatgaatggtaaaaaagtgaggctgtgttgtgaaaatttcaatggaga 6724544  T
Q  219 tgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggag 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6724543 tgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatatttttggtggatgaaagcaaagagagataggag 6724444  T
Q  319 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatat 418  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  6724443 attcaatcaataaataataaacaaactttgtattgagttcttttattgatgcatttgctgatactataacatacgaatgaaaatagaatataatttatat 6724344  T
Q  419 aa---------aaacttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaagggtcatcgatgccnn 509  Q
    ||         |   |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||       
T  6724343 aatttttttttatttttttttatattttgattgcatgtattatttttctgtaaatgatggcttttatgattatatagtattaaaggatcatcgatgcttt 6724244  T
Q  510 nnnnnnnccaagtatttcacctcacaaatgccaacatgtgaaattatgccaacatgtctttttaacttgattgtccataaaaagaagagaaatgtcccta 609  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724243 ttttttttgaagtatttcacctcacaaatgccaacatgtgaaattatgccaacatgtctttttaacttgattgtccataaaaagaagagaaatgtcccta 6724144  T
Q  610 aaaacagttgtgattgtctctagaatatgatatgtcctatacataaataaatttctacatttttgctattcacaaagtagattacatggttatcatttct 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724143 aaaacagttgtgattgtctctagaatatgatatgtcctatacataaataaatttctacatttttgctattcacaaagtagattacatggttatcatttct 6724044  T
Q  710 taattgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacac 809  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724043 taattgaaaagaaaactaaagttgcacatgaggaaccaat-ccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacac 6723945  T
Q  810 aatttgtggtaacaaattcatagaagccaacccattcatctctgc 854  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6723944 aatttgtggtaacaaattcatagaagccaacccattcatctctgc 6723900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 195 - 320
Target Start/End: Complemental strand, 17533513 - 17533390
Alignment:
Q  195 tgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtg 294  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||    
T  17533513 tgtgttgtgaaaattcaatggagatgtatatgatt-aatttaagatatgaatcactgtaattgtttttcgat-aaccaattaaaaattatgtttttggtg 17533416  T
Q  295 gatgaaagcaaagagagataggagat 320  Q
    |||||||| || |||||| |||||||    
T  17533415 gatgaaagtaatgagagagaggagat 17533390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 174 - 396
Target Start/End: Complemental strand, 212225 - 212003
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| |||||||||||||  ||||  |||||| ||| ||| ||||| ||||  ||| |||||||||||||||| | ||||||||||||| ||||||| ||    
T  212225 tgaagggtaaaaaagtgaaactgtactgtgaagatttaatagagatctatacaatttaatttaagatatgaattaatataattgtttttagattaactaa 212126  T
Q  274 ttaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatt 373  Q
    |||||||||||||||| | ||||||||   ||  ||||| |  | |||||||||||||| | |||||||||||||| || ||||||||||||||||  ||    
T  212125 ttaaaaattatgttttcgatggatgaagataactagagacaacatattcaatcaatcaacattaaacaaactttgtttttagttcttttattgatgtgtt 212026  T
Q  374 tgttgatactataacatatgaat 396  Q
    |||||||| | ||||| ||||||    
T  212025 tgttgatattctaacagatgaat 212003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 16109907 - 16110000
Alignment:
Q  200 tgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggt 293  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  16109907 tgtgaaaattcaatggagatgtataagattcaatataagatatgaattagtttaattattttttgattaaccaattaaaaattatgtttttggt 16110000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 7495095 - 7495004
Alignment:
Q  195 tgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgt 286  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||   |||||| ||||||||||||||    
T  7495095 tgtgttgtgaaaattcaatggagatgtacatgattcaatttaagatatgaatcactataattgttttttatttaacctattaaaaattatgt 7495004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 7495281 - 7495174
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||| | ||||||||||||||| ||||||||||||||||||   |||||||||||||  || ||||||||| |||||||||||||||||| ||||||     
T  7495281 gagtatcgaaattaattattttaagttaaaatatatattttattggatacttataagatactcaacagatacacacaaatacttataagatagttcacag 7495182  T
Q  148 agacgtat 155  Q
    ||| ||||    
T  7495181 agatgtat 7495174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 8485841 - 8486037
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    ||||||| ||||||||||| ||| | |||||||||  ||||||||||||||  || | |||||||     |||||||||||| |||||||||| ||||||    
T  8485841 gaattaaatattttaattttaaaaaaatattttattgaatacttataagatactccatagatacactatgatacttataagacacttcacatatacgtat 8485940  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    ||| ||| ||        | || ||||||||| ||||   ||||||||||| |||| || |||||||||||||||||||| ||||||| ||||||| |||    
T  8485941 cctagaaaaa-------ataaagggtaaaaaattgagatagtgttgtgaaa-ttcagtgtagatgtatatgattcaattttagatatgcatcagtagaat 8486032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 17533622 - 17533565
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagat 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  17533622 agtatcggaattaattattttaatttaaaatatatattttatcggatacttataagat 17533565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 417
Target Start/End: Complemental strand, 26546095 - 26545988
Alignment:
Q  309 gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaata 408  Q
    |||| ||||||||||||||||||||  |||||||| ||||| ||||||||||||| |||||  | ||||||||   |||||||||| |||||| | ||||    
T  26546095 gagaaaggagattcaatcaatcaattttaaacaaaatttgtcttgagttctttta-tgatgtttctgttgatatcctaacatatgattgaaaacataata 26545997  T
Q  409 tgatttata 417  Q
    |||||||||    
T  26545996 tgatttata 26545988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 417
Target Start/End: Complemental strand, 12312254 - 12311897
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| |||||||||||||||||||| ||| | ||| |||||| ||||||||||||||  || | || |||| |   ||||||||||||||||||| | |    
T  12312254 agtatcggaattaattattttaattttaaa-aaataatttatccaatacttataagatactccatagttacacaatgatacttataagatacttcaaaga 12312156  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagt-gaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
     | ||||||| ||| ||        |||| ||||| |||||  || |  ||||||||||| | | |||| |||||||  ||||||||| ||||||| |||    
T  12312155 tatgtatcctagaaaaa-------atgaagggtaagaaagtaaagacaatgttgtgaaaaataagtggaaatgtatacaattcaattttagatatgcatc 12312063  T
Q  248 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 347  Q
    | || |||||||| ||||| ||||| ||  |||||||  ||   |||||||||   || |||||| |||| ||||||| |||||| | ||||||||  ||    
T  12312062 aatagaattgtttctcgatcaaccactt-taaattatagtt---gtggatgaagttaacgagagagaggatattcaattaatcaacattaaacaaaactt 12311967  T
Q  348 gtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 417  Q
    || ||||||||||||  |||||| | | ||||||    |||||||||||| ||||| |||||||||||||    
T  12311966 gtgttgagttcttttgatgatgcttctattgatatcccaacatatgaatggaaataaaatatgatttata 12311897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 1929073 - 1929125
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatactta 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||    
T  1929073 gagtatcggaattaattattttaatttaaaatatatattttatcggatactta 1929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 215 - 363
Target Start/End: Complemental strand, 2988200 - 2988053
Alignment:
Q  215 gagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagata 314  Q
    ||||||||||||||||||||| ||||||| |||| || |||||||| ||||| ||||| || |||||||| ||||| ||||| ||| | || |||||| |    
T  2988200 gagatgtatatgattcaattttagatatgcatcactaaaattgtttctcgatgaaccactt-aaaattatattttttgtggaagaaggtaacgagagaga 2988102  T
Q  315 ggagattcaatcaatcaatagtaaacaaactttgtattgagttctttta 363  Q
    |  |||||| | |||||||| || | ||  | ||| |||||||||||||    
T  2988101 gctgattcagttaatcaatattagataatatatgtgttgagttctttta 2988053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 201 - 401
Target Start/End: Complemental strand, 12283807 - 12283608
Alignment:
Q  201 gtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaa 300  Q
    ||||||||||| |||  |||||||  ||||| | | ||||||| ||||||| |||||||| | ||| ||||| || ||| ||||  |||| |||||||||    
T  12283807 gtgaaaattcagtgggaatgtatacaattcagtattagatatgcatcagtagaattgtttctggatgaaccactttaaa-ttatactttttgtggatgaa 12283709  T
Q  301 agcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaa 400  Q
       || |||||| |||||||||||| |||||| | ||| |||| ||||| |||| |||||||| |||||| | | ||||||    |||||||||||||||    
T  12283708 gttaacgagagagaggagattcaattaatcaacattaatcaaaatttgtgttgaattcttttaatgatgcttctattgatatcccaacatatgaatgaaa 12283609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 490
Target Start/End: Complemental strand, 17533381 - 17533274
Alignment:
Q  389 atatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttct--gtaaatgatgacttttataattat 482  Q
    |||||||||||||||||||||||||||||  |||||||    |||| |||||||||| |||||||||||||| |   |||||  |||||||||| | |||    
T  17533381 atatgaatgaaaatagaatatgatttatacgaaaactttatattttttattttgatcacatgtattattttttttattaaattgtgacttttatgaatat 17533282  T
Q  483 atagtatt 490  Q
    ||||||||    
T  17533281 atagtatt 17533274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 714 - 853
Target Start/End: Original strand, 22000498 - 22000636
Alignment:
Q  714 tgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatt 813  Q
    |||||||||| |  |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |    
T  22000498 tgaaaagaaatccgaagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact 22000596  T
Q  814 tgtggtaacaaattcatagaagccaacccattcatctctg 853  Q
    ||||||| | ||| |||||||||||| |||||||||||||    
T  22000597 tgtggtagctaatgcatagaagccaatccattcatctctg 22000636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 32340388 - 32340284
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| |||||||||||||| |  |||||| |||||||| |  |||||||||| ||||||||| | ||||| |||| || |||||||||||||| |||||     
T  32340388 tgaagggtaaaaaagtgagacaatgttgt-aaaattcagtaaagatgtatataattcaatttcatatatgcatcaatagaattgtttttcgatgaaccat 32340290  T
Q  274 ttaaaa 279  Q
    ||||||    
T  32340289 ttaaaa 32340284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 16109785 - 16109876
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatac--ttataagatacttcaca 146  Q
    ||||||||||||||||||||||||||||| | |||| ||| ||||| |||  ||||| |||||||| | ||||   ||||||||||||||||    
T  16109785 aattaattattttaatttaaaatatatatgtaatcagatatttataggatactcgactgatacaaaaagatacatatataagatacttcaca 16109876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 688150 - 688087
Alignment:
Q  216 agatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||||| ||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||    
T  688150 agatgtatattattcaattttagatatgcatcaatataattgtttctcgatgaaccacttaaaa 688087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 427 - 490
Target Start/End: Original strand, 1929155 - 1929217
Alignment:
Q  427 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    ||||||||||||||  |||||||||||||| |||||||   |||||||||||||||||||||||    
T  1929155 ttttatattttgattacatgtattattttt-tgtaaattgcgacttttataattatatagtatt 1929217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 30928364 - 30928428
Alignment:
Q  215 gagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||||||||||| | ||||| | |||||||||||||| | ||| ||||| ||||||    
T  30928364 gagatgtatatgattcaattttatatatgcaccagtataattgtttcttgatgaaccacttaaaa 30928428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 10229461 - 10229560
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||| |  |||||  || |||| || ||||||||||||||||||||  ||||||| || | || |||||||||| ||| ||||| ||||||    
T  10229461 gtaaaaaagtgagacaatgttgcaaacattcgatagagatgtatatgattcaattatagatatgcataactagaattgttttttgatgaaccacttaaaa 10229560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-111; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 48 - 490
Target Start/End: Original strand, 31183338 - 31183775
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| ||| |||||||||||||||||   |     
T  31183338 gagtatcggaattatttattttaatttaaaatatatattttatcagatacttataagatactcgacagatacacacatatacttataagatactttctag 31183437  T
Q  148 agacgtatcct-ggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaat 246  Q
    ||||||||||| |||| ||        |||| ||||||||| |||| ||    ||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  31183438 agacgtatcctaggaaaaa----aaaatgaagggtaaaaaaatgagact----tgtgaaaattcaatggatatgtatataattcaatttgagatatgaat 31183529  T
Q  247 cagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactt 346  Q
    || |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||  ||||| |||| |||||||||||||||| |||||||||||    
T  31183530 cactataattgcttttcgattaaccaattaaaaattatgtttttggtg-atgaaagtaacaagagagaggaaattcaatcaatcaatattaaacaaactt 31183628  T
Q  347 tgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcg 442  Q
    ||| |||||||||| ||||||| ||||||||||||   ||||||||||| |||||||||||||||||||||| |||||||    |||| |||||||||      
T  31183629 tgttttgagttcttctattgatacatttgttgatatcctaacatatgaaagaaaatagaatatgatttatatgaaaactttacattttttattttgatta 31183728  T
Q  443 catgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||    
T  31183729 catgtattattttt-tgtaaatggtgacttttatgattatatagtatt 31183775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 48 - 487
Target Start/End: Original strand, 29488143 - 29488569
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |           ||| ||||| ||||||||||||||||||||||||      
T  29488143 gagtattggaattaattattttaatttaaaatacatattttatcatatactca-----------acaaatacacacaaatacttataagatacttcactg 29488231  T
Q  148 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
    | ||||||||||||| ||        |||| ||  |||||||||| || ||||||||||||| | ||||||||||||||||| | ||||||||||| |||    
T  29488232 atacgtatcctggaaaaa-------atgaagggggaaaaagtgagactttgttgtgaaaatttagtggagatgtatatgattaagtttaagatatgtatc 29488324  T
Q  248 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 347  Q
    | | ||||||| ||| ||||||||||||||||||||||||||| | ||||||||| || ||| ||  |||||||||||||||||| | ||||||||||||    
T  29488325 attgtaattgtattttgattaaccaattaaaaattatgtttttagaggatgaaagtaacgagtgagtggagattcaatcaatcaacattaaacaaacttt 29488424  T
Q  348 gtattgagttctttt--attgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatc 441  Q
    || ||||||||||||  |||||||||||||||||||   ||||||||||||||||||| |||||||||||||  |||||||    |||| ||||||||||    
T  29488425 gttttgagttctttttaattgatgcatttgttgatatcttaacatatgaatgaaaataaaatatgatttatacgaaaactttatattttttattttgatc 29488524  T
Q  442 gcatgtattatttttctgtaaatgatgacttttataattatatagt 487  Q
     |||| ||||||||| | |||||  |||||||||| ||| ||||||    
T  29488525 acatgcattattttt-tctaaatcgtgacttttatcattttatagt 29488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 48 - 312
Target Start/End: Complemental strand, 46594463 - 46594202
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||||||||||||||||||||||||||||||||||||||| |  ||| |||||||||  |||||||||| | ||| |||||||||||||||||||||     
T  46594463 gagtattggaattaattattttaatttaaaatatatattttaccggatatttataagatactcgacagatatacacatatacttataagatacttcacag 46594364  T
Q  148 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
    |||| ||||||| |||||        ||||   ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46594363 agacatatcctg-aagaa-aaaaaaatgaagtataaaaaaatgagactatgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 46594266  T
Q  248 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagaga 312  Q
    | |||||||||||||||| | |||||||||||||||||||||||||||||||||| || ||||||    
T  46594265 actataattgtttttcga-tgaccaattaaaaattatgtttttggtggatgaaagtaacgagaga 46594202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 47 - 320
Target Start/End: Complemental strand, 22791324 - 22791058
Alignment:
Q  47 agagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 146  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||  |||||||||||||  |||||| ||||| ||||||||||||||| |||||||||    
T  22791324 agagtatcgaaattaattattttaatttaaaatgtatattttatcggatacttataagatactcgacaaatacacacaaatacttataagttacttcaca 22791225  T
Q  147 tagacgtatcctggaagaagnnnnnnntgaatggtaaaaaag-tgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaa 245  Q
     ||||||||||||||| ||        ||||  ||||||||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22791224 aagacgtatcctggaaaaa------aatgaagtgtaaaaaaaatgagactgtgttgtgaaaattcaatggatatgtatatgattcaatttaagatatgaa 22791131  T
Q  246 tcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagat 320  Q
    ||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  22791130 tcactacaattg-ttttcga-taaccaattaaaaattatgtttttggtggatgaaagtaacgagagagaggagat 22791058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 43 - 332
Target Start/End: Complemental strand, 4073786 - 4073506
Alignment:
Q  43 ccatagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatactt 142  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||  || ||||| ||||| |||||    
T  4073786 ccatggagtatcggaattaattattttaatttaaaatatatattttatcgaatacttataagatactcgacaaatacacgcagatactaataaggtactt 4073687  T
Q  143 cacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatat 242  Q
    |||||| |||||||||  || ||        |||| |||||||| ||||   ||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  4073686 cacataaacgtatcctaaaaaaa--------tgaaaggtaaaaa-gtgaaattgttttgtgaaaattcaatggcgatgtgtatgattcaatttaagatat 4073596  T
Q  243 gaatcagtataattgtttttcgattaaccaatta-aaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 332  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||  ||||||||||||||||||    
T  4073595 gaatcactataattgtttttcgattaaccaattaaaaaattatgtttttggtggatgaaagtagcgagaga-gggagattcaatcaatcaa 4073506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 182 - 456
Target Start/End: Original strand, 2136805 - 2137083
Alignment:
Q  182 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 281  Q
    |||||||||||  ||||||||||||||||||||||  | ||||| ||||||||||| ||||||||||  | ||||||||| |||||||||||||||||||    
T  2136805 aaaaaagtgagtatgtgttgtgaaaattcaatggaagtatatataattcaatttaatatatgaatcaccacaattgttttacgattaaccaattaaaaat 2136904  T
Q  282 tatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgata 381  Q
    |||||||||| | || ||||| || || | |   || |||||||||||||| | |||| ||||||||| |||| |||||||||| |||||||||||||||    
T  2136905 tatgtttttgattgacgaaagtaacgaaataggagatattcaatcaatcaacattaaataaactttgttttgaattcttttattaatgcatttgttgata 2137004  T
Q  382 ctataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 456  Q
       |||||||||||||||||||||||||||||| ||  |||||||    |||| | |||||||| ||||||||||||||    
T  2137005 tcctaacatatgaatgaaaatagaatatgatttctacgaaaactttagattttttgttttgatcacatgtattattttt 2137083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 57 - 381
Target Start/End: Complemental strand, 50461435 - 50461121
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||| ||  |||||| |||||  ||||||||||||  |||||||||  | |||||||    
T  50461435 aattaattattttaattttaaaaatatattttatcgaatacttataaaatactcgacatataca--caaatacttatataatacttcacgcatacgtatc 50461338  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 256  Q
    ||  || ||        |||| |||||| |||||||  | | | ||||||||||||| |||||||||||| ||||||||||||||||||||  |||||||    
T  50461337 ctaaaaaaaaaaaaaaatgaagggtaaagaagtgagattatatggtgaaaattcaatagagatgtatatggttcaatttaagatatgaatcgatataatt 50461238  T
Q  257 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagt 356  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||| || || ||  || | ||||||||||| || | |        ||||| ||||||    
T  50461237 gtttttcgattaaccaaataaaaattatgttttttgtggatgaaagtaacgaaag--agaaaattcaatcaattaacatt------tttttgttttgagt 50461146  T
Q  357 tcttttattgatgcatttgttgata 381  Q
    |||||||||||||||||||||||||    
T  50461145 tcttttattgatgcatttgttgata 50461121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 50709546 - 50709675
Alignment:
Q  182 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 281  Q
    |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  50709546 aaaaaaatgagacagtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcattataattgtttttcga-taaccaattaaaaat 50709644  T
Q  282 tatgtttttggtggatgaaagcaaagagaga 312  Q
    ||||||||||||||||||||| || ||||||    
T  50709645 tatgtttttggtggatgaaagtaacgagaga 50709675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 250 - 381
Target Start/End: Original strand, 51273129 - 51273262
Alignment:
Q  250 tataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaatagtaaacaaacttt 347  Q
    ||||||| |||||||||| || |||||||||||||||||||| | |||||||||||  ||||||| ||||||||||||||||||||| |||||||| |||    
T  51273129 tataattatttttcgattgactaattaaaaattatgtttttgatagatgaaagcaatgagagagagaggagattcaatcaatcaatattaaacaaatttt 51273228  T
Q  348 gtattgagttcttttattgatgcatttgttgata 381  Q
    || ||||||||||||||||||||| |||||||||    
T  51273229 gttttgagttcttttattgatgcagttgttgata 51273262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 48 - 248
Target Start/End: Complemental strand, 17936433 - 17936244
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||   |||||||||||| ||| |||||| |||||| |||||||     
T  17936433 gagtatcggaattaattattttaatttaaaatatatattttattggatacttataaga--ctcgacagatacacacatatacttgtaagattcttcacag 17936336  T
Q  148 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
    | ||||||||||||| ||        ||||  |||||||| ||||  ||| ||||||||||||||||||||||||||||| ||||| || ||||||||||    
T  17936335 acacgtatcctggaaaaa-------atgaagtgtaaaaaa-tgagattgttttgtgaaaattcaatggagatgtatatga-tcaatatatgatatgaatc 17936245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 49 - 260
Target Start/End: Original strand, 14286910 - 14287115
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| |||||||||||||||||||||||| |||||| |||||  ||||||||| |||  || | ||||||| |   |||||||||||||||||| ||||    
T  14286910 agtatcggaattaattattttaatttaaaaaatatatattatcggatacttatatgatactccatagatacacaatgatacttataagatacttcgcata 14287009  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 248  Q
     | ||||||| ||| |||       |||| || ||||||||||| |  |||||| ||||||||   |||||||||||||| |||||| ||||||| || |    
T  14287010 tatgtatcctagaaaaag------atgaagggaaaaaaagtgagacaatgttgtaaaaattcaggagagatgtatatgatgcaattttagatatgcatta 14287103  T
Q  249 gtataattgttt 260  Q
    ||| ||||||||    
T  14287104 gtagaattgttt 14287115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 385 - 490
Target Start/End: Complemental strand, 22791053 - 22790945
Alignment:
Q  385 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 480  Q
    ||||||||||||||||||| |||||||||||||  |||||||    |||| |||||||||| |||||||||||||| |||||||  |||||||||| |||    
T  22791053 taacatatgaatgaaaataaaatatgatttatacgaaaactttaagttttttattttgatcacatgtattattttt-tgtaaattgtgacttttatgatt 22790955  T
Q  481 atatagtatt 490  Q
    ||||||||||    
T  22790954 atatagtatt 22790945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 50709454 - 50709505
Alignment:
Q  55 ggaattaattattttaatttaaaatatatattttatcaaatacttataagat 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50709454 ggaattaattattttaatttaaaatatatattttatcagatacttataagat 50709505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 50727149 - 50727243
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||      |||||||||| | |   |||||||||||||||||||||||||||||||    
T  50727149 aattaattattttaatttaaaatatacattttatcatatacttata-----ctcgacagatatacattgatacttataagatacttcacatagacgtatc 50727243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 279
Target Start/End: Complemental strand, 4973306 - 4973087
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    ||||||||||||| ||||| ||| | ||||||||||| ||||||||| |||  || ||| ||||| | | ||||||||||||||||| ||||| | ||||    
T  4973306 gaattaattatttaaattttaaaaaaatattttatcagatacttatatgatactccacaaatacacaaagatacttataagatactttacatatatgtat 4973207  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    ||| ||| ||        |||| || || |||||||| |  | |||| |||||||| ||||||| ||||||||||||||| ||||||  ||| ||| |||    
T  4973206 cctagaaaaa----aaaatgaagggcaataaagtgagacaatattgtaaaaattcagtggagatatatatgattcaattttagatatacatctgtagaat 4973111  T
Q  256 tgtttttcgattaaccaattaaaa 279  Q
    ||||| ||||| ||| | ||||||    
T  4973110 tgtttctcgatgaacaacttaaaa 4973087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 16122800 - 16122885
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 260  Q
    |||| |||||||||||||| |  |||||||||| |||| |||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  16122800 tgaagggtaaaaaagtgagacaatgttgtgaaa-ttcattggaaatgtatatgattcaattttagatatgcatcagtataattgttt 16122885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 13558498 - 13558597
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||| |  |||||| || ||||||| | ||||||||||||||||||| ||||||| |||| || |||||||| ||||| ||||| ||||||    
T  13558498 gtaaaaaagtgagacaatgttgtaaacattcaatagggatgtatatgattcaattttagatatgcatcactaaaattgtttctcgatgaaccacttaaaa 13558597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 30193412 - 30193478
Alignment:
Q  232 atttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatga 299  Q
    |||||| || ||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30193412 atttaaaatttgaatcgctataattgtttttcgat-aaccaattaaaaattatgtttttggtggatga 30193478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 38682995 - 38682929
Alignment:
Q  213 tggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||||| ||||||||||| ||||||    
T  38682995 tggagatgtatatgattcaattttagatatgcatcaatagaattgtttctcgattaaccacttaaaa 38682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 30902449 - 30902397
Alignment:
Q  199 ttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagta 251  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  30902449 ttgtgaaaattcaatggagatgtatatgattcaattttaaatatgcatcagta 30902397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 270965 - 271024
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 256  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||  ||||||||||||    
T  270965 tgttgtgaaaattcgatggagatatatatgattcaattttagatatacatcagtataatt 271024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 781883 - 781937
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagta 251  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||| |||||    
T  781883 tgttgtgaaaattcaatgaatatgtatatgattcaattttagatatgaaacagta 781937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 279
Target Start/End: Complemental strand, 31513843 - 31513625
Alignment:
Q  55 ggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgta 154  Q
    ||||||||||||||||||||  |||| ||||||||||  ||||||||  |||  || ||||||||| |   |||||| |||||||||||||| | |||||    
T  31513843 ggaattaattattttaatttttaataaatattttatcggatacttatgtgatactccacagatacacaaggatacttctaagatacttcacagacacgta 31513744  T
Q  155 tcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataa 254  Q
    |||| ||| |||       |||   ||||||||||||| |  |||||| |||||| | |  || ||||||||| ||||||| ||||||| |||| || ||    
T  31513743 tcctagaaaaag------atgaggagtaaaaaagtgagacaatgttgtaaaaatttattataggtgtatatgactcaattttagatatgcatcaatagaa 31513650  T
Q  255 ttgtttttcgattaaccaattaaaa 279  Q
    |||||| ||||| || || ||||||    
T  31513649 ttgtttctcgatgaaacagttaaaa 31513625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 279
Target Start/End: Original strand, 40693821 - 40694046
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||||||||||||||||||||||||  |||| ||||||||||  |||| |||  |||  || || |||||| |  ||||||| |||||||||||||| |    
T  40693821 agtattggaattaattattttaatttttaataaatattttatcggatacatatgtgatactccacggatacacaagaatacttctaagatacttcacaga 40693920  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatg-gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
     |||||| || ||| ||        |||| | ||||||||||||| |  |||||| |||||||| |   ||||||||||| ||||| | ||||||| |||    
T  40693921 aacgtattctagaaaaa------tatgaaggagtaaaaaagtgagacaatgttgtaaaaattcattattgatgtatatgactcaatattagatatgcatc 40694014  T
Q  248 agtataattgtttttcgattaaccaattaaaa 279  Q
    | || |||||||||||||| || || ||||||    
T  40694015 aatagaattgtttttcgatgaaacacttaaaa 40694046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 50709686 - 50709728
Alignment:
Q  385 taacatatgaatgaaaatagaatatgatttatataaaaacttt 427  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  50709686 taacatatgaatgaaaatagaatatgatttatatgaaaacttt 50709728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 279
Target Start/End: Original strand, 17116139 - 17116365
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| ||||||||||||||||||||  | || ||||||||||  |||||||   |||  || ||||||||| |  ||||||| ||||||||||||||||    
T  17116139 agtatcggaattaattattttaatttttattaaatattttatcggatacttaggtgatactccacagatacacaagaatacttctaagatacttcacata 17116238  T
Q  149 gacg--tatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaat 246  Q
     |||  |||||| ||| |||       ||||  |||||||||||||    |||||| |||||||  |  |||||||||||| ||||||| ||||||| ||    
T  17116239 cacgtatatcctagaaaaag------atgaagagtaaaaaagtgagataatgttgtaaaaattctttatagatgtatatgactcaattttagatatgcat 17116332  T
Q  247 cagtataattgtttttcgattaaccaattaaaa 279  Q
    || || |||| ||||||||| || || ||||||    
T  17116333 caatagaattatttttcgatgaaacacttaaaa 17116365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 369
Target Start/End: Original strand, 4966736 - 4966887
Alignment:
Q  216 agatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagatag 315  Q
    |||| ||||||||||||||| ||||||  ||| ||| |||||||| ||||| ||| | ||||||  |||  || | ||||||||||| || |||||| ||    
T  4966736 agatatatatgattcaattttagatatacatctgtagaattgtttctcgatgaacaacttaaaa--tatacttcttgtggatgaaagtaacgagagagag 4966833  T
Q  316 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatg 369  Q
      |||||| | |||||| | |||| ||| ||||| ||||||||||||| |||||    
T  4966834 atgattcagttaatcaacattaaataaaatttgtgttgagttcttttaatgatg 4966887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 13643833 - 13643894
Alignment:
Q  182 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatg 243  Q
    ||||||||||| |   ||||| |||||||||| ||||||||||||||||||||| |||||||    
T  13643833 aaaaaagtgagacaacgttgtaaaaattcaatagagatgtatatgattcaattttagatatg 13643894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 2136732 - 2136779
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataa 103  Q
    |||||||||||||||||||||   ||||||||||||| ||||||||||    
T  2136732 gaattaattattttaatttaaccgatatattttatcagatacttataa 2136779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 389 - 456
Target Start/End: Original strand, 16123013 - 16123084
Alignment:
Q  389 atatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 456  Q
    ||||||||||||||| |||||| ||||||  |||||||    |||| ||||||||||| |||||||||||||    
T  16123013 atatgaatgaaaatataatatggtttataagaaaactttacattttttattttgatcgaatgtattattttt 16123084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 50726668 - 50726754
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 266  Q
    ||||||||||||| |  |||||| |||||||| |  |||||||||||| ||||||| |||||||  ||| || |||||||| |||||    
T  50726668 gtaaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgactcaattttagatatgcgtcaatagaattgtttctcgat 50726754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 10443426 - 10443478
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttata 102  Q
    ||||| |||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  10443426 agtatcggaattaattattttaattttaaa-aaatattttatctaatacttata 10443478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-105; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 48 - 490
Target Start/End: Original strand, 26352483 - 26352920
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||  |||| | ||||| ||| ||||||||||||||||||||||    
T  26352483 gagtatcggaattaattattttaatttaaaatatatattttattggatacttataagatactcgataaatacacacatatacttataagatacttcacat 26352582  T
Q  148 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
    | |||||||||  || |         |||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  26352583 aaacgtatcctaaaaaa---------tgaaaggtaaaaaagtgagtctgttttgtgaaaattcaatggagatgtgtatgattcaatttaagatatgagtc 26352673  T
Q  248 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 347  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||  |||||||||||||||||| | |||| |||| |     
T  26352674 actataattgtttctcgattaaccaattaaaaattatgtttttggtggatgaaagtaatgaaagaggggagattcaatcaatcaacattaaataaacgta 26352773  T
Q  348 gtattgagttcttttattgatgcatttgttgatactataaca-tatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcg 442  Q
    || |||||||||||||  |||  |||||||||||   ||||| |||||||||||||| |||||||||||||  |||||||    |||| |||||||||||    
T  26352774 gttttgagttcttttaccgataaatttgttgatatcctaacattatgaatgaaaataaaatatgatttatacgaaaactttacattttttattttgatcg 26352873  T
Q  443 catgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    | |||||||||||| ||||||| ||||||||||| ||| |||||||||    
T  26352874 cttgtattattttt-tgtaaattatgacttttatgattttatagtatt 26352920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 57 - 416
Target Start/End: Original strand, 45388644 - 45388997
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    ||||||||||||||||||||||||||||||||||   ||||||| |||||  ||||||||||||||||||||||||||||||||||| || |||| ||||    
T  45388644 aattaattattttaatttaaaatatatattttattggatacttagaagatactcgacagatacaaacaaatacttataagatacttcgcaaagacatatc 45388743  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaag-tgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    ||| || ||        |||| |||||||||  |||| ||||||||||||||||||||||||||  || |||||||||||||||||| ||||| ||||||    
T  45388744 ctgaaaaaa-------atgaagggtaaaaaaaatgagactgtgttgtgaaaattcaatggagattaatttgattcaatttaagatataaatcactataat 45388836  T
Q  256 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgag 355  Q
    | ||||||||||||| |||||||||||||||||||| || ||||||| || |||||| | ||||||||||||||||| | |||||| ||||||| || ||    
T  45388837 tatttttcgattaactaattaaaaattatgtttttgttgaatgaaagtaacgagagagatgagattcaatcaatcaacattaaacatactttgttttaag 45388936  T
Q  356 ttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 416  Q
    |||||||||||||||||||||| |||   ||||||||||||||||||| ||||||||||||    
T  45388937 ttcttttattgatgcatttgttaatatcctaacatatgaatgaaaatataatatgatttat 45388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 126 - 487
Target Start/End: Original strand, 36925503 - 36925856
Alignment:
Q  126 atacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatat 225  Q
    |||||||||||||||||||   |||||||||||||| |||        |||| ||||||||  ||||  |||||||| ||||||    ||||||||||||    
T  36925503 atacttataagatacttcattgagacgtatcctggaggaa----taaatgaagggtaaaaacatgagattgtgttgtaaaaatt----ggagatgtatat 36925594  T
Q  226 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaat 325  Q
    || |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||    
T  36925595 gagtcaatttaagatatgaatgactataattgtttttcgattaaccaattaaaaattatgtttttggtagatgaaagc-gagagagagaggagattcaat 36925693  T
Q  326 caatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaact 425  Q
    ||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| ||  ||||||    
T  36925694 caatcaacattaaacaaactttgttttgagttcttttattgatgtatttgttgata-tctaacatgtgaatgaaaatagaatatgatttttacgaaaact 36925792  T
Q  426 tt---tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagt 487  Q
    ||   ||| |||||||||| |||||||||||||| |||||||  ||||||||||  |||||||||    
T  36925793 ttacatttttattttgatcacatgtattattttt-tgtaaattgtgacttttatggttatatagt 36925856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 183 - 490
Target Start/End: Original strand, 3353132 - 3353439
Alignment:
Q  183 aaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatt 282  Q
    |||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  3353132 aaaaagtgagactatgttgtgaaaatttaatggaaatgtatatgattcaatttaagatatgaatcattataattgtttttcgattaaccagttaaaaatt 3353231  T
Q  283 atgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatac 382  Q
    ||||||||||| |||||||| || ||| || | ||||||| ||||||||| | |||||||||||||| ||||||||||||||| || ||||||||||||     
T  3353232 atgtttttggtagatgaaagtaacgagggagaagagattcgatcaatcaacattaaacaaactttgttttgagttcttttattcatacatttgttgatat 3353331  T
Q  383 tataacatatgaatgaaaatagaatatgatttatataaaaactt---ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataat 479  Q
      |||||||||||||||||| | ||||||||||||  |||||||     || |||||||||  ||||| |||||||| |||||||   ||||||||| ||    
T  3353332 cctaacatatgaatgaaaattggatatgatttatacgaaaacttcacaattttattttgat--catgtgttattttt-tgtaaattgggacttttatgat 3353428  T
Q  480 tatatagtatt 490  Q
    |||||||||||    
T  3353429 tatatagtatt 3353439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 56 - 320
Target Start/End: Complemental strand, 43355967 - 43355706
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||  | || ||||||| ||| || |||||||||||||||| | ||||||||    
T  43355967 gaattaattattttaatttaaaatatatattttattggatacttataagatacttgagagatacacacatatgcttataagatacttcatagagacgtat 43355868  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    |||| || ||        || |    |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  43355867 cctgaaaaaaaaatgaagtgtaaa--aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaagttaagatatgaatcactataat 43355770  T
Q  256 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagat 320  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||| || |||||| |||||||    
T  43355769 tgtttttcta-taacgaattaaaaattatgtttttggtggatgaaagtaatgagagagaggagat 43355706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 180 - 377
Target Start/End: Original strand, 18858483 - 18858680
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||   |||| |||| |||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |    
T  18858483 gtaaaaaagtgaatatgtgatgtgtaaattcaatgaagatgtatatgattcaatttatgatatgaatgaatataattgtttttcgattaaccaattaata 18858582  T
Q  280 attatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgtt 377  Q
    |||||||||||||| |||||||| || |||||| | ||||||||||||||||  | |||||||||||||| || | ||||||||||||||||||||||    
T  18858583 attatgtttttggtagatgaaagtaacgagagagaagagattcaatcaatcagcattaaacaaactttgttttaaattcttttattgatgcatttgtt 18858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 64 - 404
Target Start/End: Complemental strand, 36526170 - 36525847
Alignment:
Q  64 tattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatcctggaag 163  Q
    ||||||||||||||| ||||||||||||| ||| ||||| |||  |||||||||||  ||||||||||| ||||||||||| ||| | ||||| |||||     
T  36526170 tattttaatttaaaaaatatattttatcagatatttataggatattcgacagatacccacaaatacttagaagatacttcaaatatatgtatcttggaaa 36526071  T
Q  164 aagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttc 263  Q
    |         |||| ||||||||||||||  |||||||||| ||||||||||||||||| ||||||||||             || ||||| ||||||||    
T  36526070 a------caatgaagggtaaaaaagtgagattgtgttgtgagaattcaatggagatgtacatgattcaat-------------caatataactgtttttc 36525990  T
Q  264 gattaaccaattaaaaattatgtttttggtggatgaaagcaaaga--gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttt 361  Q
    |||||| |||||| |||||||||||||| ||||||| || || ||  |||| |||  |||||||||||||||| |||||||| ||||| ||||||| |||    
T  36525989 gattaatcaattacaaattatgtttttgttggatgagagtaacgacagagacaggtaattcaatcaatcaatattaaacaaattttgttttgagtttttt 36525890  T
Q  362 tattgatgcatttgttgatactataacatatgaatgaaaatag 404  Q
    ||||||||||||||||||     ||| ||||||||||||||||    
T  36525889 tattgatgcatttgttgacgtcctaatatatgaatgaaaatag 36525847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 174 - 426
Target Start/End: Original strand, 44986408 - 44986650
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||||| ||||||  |||| |||| ||||||||||||||||||  ||||||||||||||||      ||||| || ||||||||||||||||||||||||    
T  44986408 tgaatgataaaaagttgagactgtattgtgaaaattcaatgga--tgtatatgattcaatt------atgaaacaatataattgtttttcgattaaccaa 44986499  T
Q  274 ttaaaaattatgtttttggtggatgaaagcaaaga-gagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcat 372  Q
     | ||||||||||||||  ||||| ||||  | || |||| ||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||    
T  44986500 ctgaaaattatgtttttcttggat-aaag--atgacgagaaaggagattcaatcaatcaacattaaacaaactttgttttgggttcttttattgatgcat 44986596  T
Q  373 ttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt 426  Q
    |||||||||   ||| |||| | |||||||| |||||||||||||  |||||||    
T  44986597 ttgttgatatcttaatatataagtgaaaatataatatgatttatactaaaactt 44986650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 16496884 - 16496758
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtgga 296  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||| ||||| ||||| || |||| ||| ||||| |||||    
T  16496884 tgttgtgaaaattcaatgaagatgtatatgattcaattttagatgtgaatcagtaaaattgtttctcgatgaaccactt-aaaagtatattttttgtgga 16496786  T
Q  297 tgaaagcaaagagagataggagattcaa 324  Q
    |||| ||||  ||||| | |||||||||    
T  16496785 tgaatgcaataagagagatgagattcaa 16496758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 49 - 332
Target Start/End: Original strand, 36467100 - 36467374
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| |||||||||||||||||||||||| | ||||||||||  ||||||||| ||| ||| ||||||||| | | ||||||||||||||||||||| |    
T  36467100 agtatcggaattaattattttaatttaaaaaa-atattttatctgatacttataggataatccacagatacacaaagatacttataagatacttcacaga 36467198  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 248  Q
     | |||  || | ||| |       |||  ||||| |||||||| |  |||||| |||||||| | || |||||||||||||||||| ||||||| || |    
T  36467199 tatgtaaactag-agatg------atgacgggtaagaaagtgagacaatgttgtaaaaattcagttgaaatgtatatgattcaattttagatatgcataa 36467291  T
Q  249 gtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 332  Q
    ||| |||||||| ||||| ||||| || ||||||||| || | ||||||||| | || |||||| | | |||||||| ||||||    
T  36467292 gtaaaattgtttctcgatgaaccactt-aaaattatgattcttgtggatgaaggtaatgagagagatgtgattcaattaatcaa 36467374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 30776576 - 30776750
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    |||||||||||||||||| ||| |||||||||| | | |||||||| |||   ||| ||||||| ||| |||||||||||||||||||||   | |||||    
T  30776576 aattaattattttaatttcaaaaatatattttagcgattacttataggatatccgatagatacacacatatacttataagatacttcacagttaagtatc 30776675  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaag 238  Q
    || | ||||        |||| |||||||||||||| ||||||| | |||||||||| |||||||||||||||||| |||||    
T  30776676 cttg-agaa------attgaagggtaaaaaagtgagactgtgttataaaaattcaatcgagatgtatatgattcaaattaag 30776750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 55 - 279
Target Start/End: Original strand, 7017729 - 7017950
Alignment:
Q  55 ggaattaattattttaatttaaaatatatattttatcaaatacttataagat---catcgacagatacaaacaaatacttataagatacttcacatagac 151  Q
    |||||||||||||| ||||| ||| | ||||||||||  ||||||||| |||   | || ||| ||||| | | ||| ||||||||||||||||||| |     
T  7017729 ggaattaattatttaaattttaaaaaaatattttatcggatacttatatgatactcctccacaaatacacaaagatatttataagatacttcacatatat 7017828  T
Q  152 gtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagta 251  Q
    || |||| ||| |||       |||| |||||||||||||| |  |||||| |||||||| | ||||||||||||||||||||| ||||||| ||  |||    
T  7017829 gtttcctagaaaaaga------tgaagggtaaaaaagtgagacaatgttgtaaaaattcagtagagatgtatatgattcaattttagatatgcatgggta 7017922  T
Q  252 taattgtttttcgattaaccaattaaaa 279  Q
     |||||||| ||||| ||||| ||||||    
T  7017923 gaattgtttctcgataaaccacttaaaa 7017950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 41323899 - 41323996
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaacc 271  Q
    |||| |||||||||||||| |  |||||| |||||||| | ||||||||||||||||||||| ||||||| ||||||| |||||||| ||||| ||||    
T  41323899 tgaacggtaaaaaagtgagacaatgttgtaaaaattcagtagagatgtatatgattcaattttagatatgcatcagtaaaattgtttctcgatgaacc 41323996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 14749467 - 14749531
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagataca 120  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| |||||||||    
T  14749467 gaattaattattttaatttaaaatatatattttatcggatacttataagataatcaacagataca 14749531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 35298334 - 35298551
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    ||||||||||||||||||||||| |  |||||| ||  ||||||||| |||  || ||||||||| | | ||| ||||||||||||||||||| ||||||    
T  35298334 gaattaattattttaatttaaaagaattatttt-tcggatacttatatgatactccacagatacacaaagatatttataagatacttcacatatacgtat 35298432  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
     || ||| ||        | || |||||||||||||| |  |||||| |||||||| | ||||||||||| ||||||||| ||| ||| |||| || |||    
T  35298433 tctagaaaaa-----agataaaaggtaaaaaagtgagacaatgttgtaaaaattcagtagagatgtatataattcaattttagaaatgcatcaatagaat 35298527  T
Q  256 tgtttttcgattaaccaattaaaa 279  Q
    | ||| ||||| ||||| ||||||    
T  35298528 tatttctcgatgaaccacttaaaa 35298551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 37273022 - 37272917
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| ||||||||||| || |  |||||| |||||||| | ||||||||||||||||||||| ||| ||| |||| || |||||||||||||| |||||     
T  37273022 tgaaaggtaaaaaagtaagacaatgttgtaaaaattcagtagagatgtatatgattcaattttagacatgcatcaataaaattgtttttcgatgaaccac 37272923  T
Q  274 ttaaaa 279  Q
    ||||||    
T  37272922 ttaaaa 37272917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 202 - 423
Target Start/End: Original strand, 11457848 - 11458070
Alignment:
Q  202 tgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatt-atgtt--tttggtggatg 298  Q
    |||||||||||||||  |||||||||||||| || |||| | ||  ||||||||| ||||| ||| ||||| |||||  || || ||  ||| |||||||    
T  11457848 tgaaaattcaatggaagtgtatatgattcaactttagatctaaaatagtataattatttttggatgaaccacttaaatttttattttatttttgtggatg 11457947  T
Q  299 aaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatga 398  Q
    || | || |||||| |  ||||| ||| |||||| | || ||||| ||||| ||| ||| ||||| |||||| | ||||||||  |||| ||||||||||    
T  11457948 aaggtaatgagagaga--agatttaattaatcaacattagacaaaatttgtgttgcgttattttaatgatgcttatgttgatatcataatatatgaatga 11458045  T
Q  399 aaatagaatatgatttatataaaaa 423  Q
    ||||| ||||| |||||||| ||||    
T  11458046 aaatataatattatttatatgaaaa 11458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 36925450 - 36925515
Alignment:
Q  41 atccatagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagat 106  Q
    ||||| |||||||  ||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  36925450 atccacagagtatcagaattaactattttaatttaaaatatatattttatcggatacttataagat 36925515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 427 - 490
Target Start/End: Original strand, 14749544 - 14749606
Alignment:
Q  427 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    |||| |||||||||| |||||||||||||| ||||||| | ||||||||| |||||||||||||    
T  14749544 ttttttattttgatcacatgtattattttt-tgtaaatcacgacttttatgattatatagtatt 14749606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 11562836 - 11562733
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| |||||||||||||| |  ||||||  ||||||| | ||||| |||||||||||||||  |||||||||||  | |||||||| ||||| |||||     
T  11562836 tgaagggtaaaaaagtgagacaatgttgtagaaattcagtagagatatatatgattcaattttggatatgaatca--acaattgtttctcgataaaccac 11562739  T
Q  274 ttaaaa 279  Q
    ||||||    
T  11562738 ttaaaa 11562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 260
Target Start/End: Complemental strand, 38221845 - 38221640
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagat-catcgacagatacaaacaaatacttataagatacttcacat 147  Q
    ||||| |||||||||||||| |||||  || | |||||||| | |||||||||| ||| | ||| |||||||| |   ||| ||| ||||||||||||||    
T  38221845 agtatcggaattaattatttaaatttttaaaaaatattttaacgaatacttatacgatacttcg-cagatacacaaggatatttacaagatacttcacat 38221747  T
Q  148 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
    | | ||||||| ||| |||       ||||  |||||| |||||| |  |||||| || ||||||| |||||||||||||||||||||  |||||| |||    
T  38221746 atatgtatcctagaaaaaga------tgaagagtaaaagagtgagacaatgttgtaaacattcaatagagatgtatatgattcaattttggatatgcatc 38221653  T
Q  248 agtataattgttt 260  Q
    | || ||||||||    
T  38221652 actagaattgttt 38221640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 490
Target Start/End: Original strand, 45389019 - 45389076
Alignment:
Q  432 tattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    |||||||||| |||||||||||||| |||||||  |||||||||| |||||||||||||    
T  45389019 tattttgatcacatgtattattttt-tgtaaattgtgacttttatgattatatagtatt 45389076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 369
Target Start/End: Original strand, 30485631 - 30485795
Alignment:
Q  204 aaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagc 303  Q
    |||||||| | ||||||| | || |||||||| ||||||| |||| || |||||||| ||| | ||||| |||||  ||||  || | ||||||||| |     
T  30485631 aaaattcagtagagatgtgtgtggttcaattttagatatgcatcattagaattgtttctcggtgaaccacttaaat-ttatacttcttgtggatgaaggt 30485729  T
Q  304 aaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatg 369  Q
    || |||||| ||| |||||||| |||||| | || | ||| ||||| ||||||||||||| |||||    
T  30485730 aatgagagaaaggtgattcaattaatcaacattagataaagtttgtgttgagttcttttaatgatg 30485795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 18858366 - 18858417
Alignment:
Q  57 aattaattattttaatttaaa--atatatattttatcaaatacttataagat 106  Q
    |||||||||||||||||||||  ||||||||||||||  |||||||||||||    
T  18858366 aattaattattttaatttaaaatatatatattttatcggatacttataagat 18858417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 40498676 - 40498736
Alignment:
Q  219 tgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||||||| ||||||| |||| || |||||||| ||||| ||||| ||||||    
T  40498676 tgtatatgattcaattttagatatgcatcactagaattgtttctcgatgaaccacttaaaa 40498736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 426 - 490
Target Start/End: Complemental strand, 43344752 - 43344689
Alignment:
Q  426 tttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    ||||| |||||||||| |||||||||||||| ||| |||  |||||||||| |||||||||||||    
T  43344752 tttttttattttgatcacatgtattattttt-tgtgaattgtgacttttatgattatatagtatt 43344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 18561115 - 18561170
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaattt 235  Q
    ||||||||||||| |  |||| |||||||||| |||| ||||||||||||||||||    
T  18561115 gtaaaaaagtgagacaatgttttgaaaattcagtggaaatgtatatgattcaattt 18561170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 42794880 - 42794781
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||| |  |||||| |||||||| |  |||||||| ||| ||||||| ||||||| |||| || |||||||| ||||| || || ||||||    
T  42794880 gtaaaaaagtgagacaatgttgtaaaaattcattatagatgtatgtgactcaattttagatatgcatcaatagaattgtttctcgatgaaacacttaaaa 42794781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 2788913 - 2788999
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 260  Q
    |||||| |||||||||||| |  | |||||||| || |||||| |||||||| ||||||||| | ||||| || |||| ||||||||    
T  2788913 tgaatgttaaaaaagtgagacaatattgtgaaagtttaatggaaatgtatatcattcaattttaaatatgcattagtaaaattgttt 2788999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 38140639 - 38140681
Alignment:
Q  217 gatgtatatgattcaatttaagatatgaatcagtataattgtt 259  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||    
T  38140639 gatgtatatgattcaattttagatatgcatcaatataattgtt 38140681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 38558759 - 38558674
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 260  Q
    |||| |||||||||||||| | | |||||||||||| | || |||| |||  |||||||||| ||||||  ||||||||||||||||    
T  38558759 tgaaaggtaaaaaagtgagacagagttgtgaaaatttattgaagatatatc-gattcaattttagatatatatcagtataattgttt 38558674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 17328607 - 17328707
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    |||||||||||| ||||||||| | |||| |||||  ||||||||| |||  || | ||||||| |   ||||||||||||||||||||||| | |||||    
T  17328607 aattaattattt-aatttaaaaaaaatatattatcggatacttatatgatactccatagatacacaatgatacttataagatacttcacatatatgtatc 17328705  T
Q  157 ct 158  Q
    ||    
T  17328706 ct 17328707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-99; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 48 - 486
Target Start/End: Complemental strand, 31397423 - 31396988
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||  |||| ||| |||||||||||||  ||||||     
T  31397423 gagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagatattcgacatgtacacacagatacttataagatgtttcacac 31397324  T
Q  148 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
    | ||||||||||||| ||         ||| |||||||||||||| |||||||||||||||| |||||| || ||||||| |||||||||||||| ||||    
T  31397323 atacgtatcctggaaaaaaac------gaaaggtaaaaaagtgagactgtgttgtgaaaattgaatggaaatatatatgactcaatttaagatataaatc 31397230  T
Q  248 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 347  Q
    | |||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| || |||||| | || |||||||||||||| | ||||||||||||    
T  31397229 actataattgtttttcaattaaccaattgaaaattatgttattggtgaatgaaagtaacgagagagaagatattcaatcaatcaacattaaacaaacttt 31397130  T
Q  348 gtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgc 443  Q
    || |||||||||||||||||||||||||||||||    ||||||| ||| |||||| |||||||||||||| |||| ||    |||| |||||||||| |    
T  31397129 gttttgagttcttttattgatgcatttgttgatatcccaacatataaataaaaataaaatatgatttatatgaaaattttatattttttattttgatcac 31397030  T
Q  444 atgtattatttttctgtaaatgatgacttttataattatatag 486  Q
    | |||||| |||| |||||||  |||||||||| |||||||||    
T  31397029 aagtattactttt-tgtaaattgtgacttttatgattatatag 31396988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 57 - 486
Target Start/End: Complemental strand, 44798423 - 44797994
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    ||||||||||||||||||||||| ||| ||||||   |||  ||||||||  |||| |||||||  || ||| ||||||||||||||||| |||||||||    
T  44798423 aattaattattttaatttaaaatttattttttattggatatatataagatactcgatagatacatccatatatttataagatacttcacagagacgtatc 44798324  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 256  Q
     |  ||  ||       |||| ||||||||| | |   ||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||    
T  44798323 tt--aaagagagaaaaatgaagggtaaaaaaataaaattgtgttgtgaaaattcagtggagatgtatgtgtttcaatttaagatatgaatcactataatt 44798226  T
Q  257 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagt 356  Q
     ||| || ||||||||||||||| ||||||||||||||||| |||| || |||||  || ||||||||||||||||   |||| ||||||||| ||||||    
T  44798225 atttctcaattaaccaattaaaatttatgtttttggtggataaaagtaacgagag--agaagattcaatcaatcaacgttaaataaactttgttttgagt 44798128  T
Q  357 tcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt----tttatattttgatcgcatgtattat 452  Q
    |||||||||||  ||||||||||||   ||||||||||||||||||| |||||||||||||  ||||||||    ||| |||||||||| |||||||| |    
T  44798127 tcttttattgaaacatttgttgatatcctaacatatgaatgaaaatataatatgatttatacgaaaactttacaatttttattttgatcacatgtatttt 44798028  T
Q  453 ttttctgtaaatgatgacttttataattatatag 486  Q
    |||| |||||||  |||||||||| |||||||||    
T  44798027 ttttttgtaaattgtgacttttatgattatatag 44797994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 55 - 318
Target Start/End: Original strand, 48138396 - 48138652
Alignment:
Q  55 ggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgta 154  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||| ||||||||||||||||||||||||| |||||||    
T  48138396 ggaattaattattttaatttaaaatatatattttatcggatacttataagatactcgacagatacacacaaatacttataagatacttcacagagacgta 48138495  T
Q  155 tcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataa 254  Q
    |||||||| ||        ||||   |||| || |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  48138496 tcctggaaaaa------aatgaagcttaaataaatgagactgtgttctgaaaatttaatggagatgtatatgattcaatttaagatatgaatcactataa 48138589  T
Q  255 ttgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggag 318  Q
    || |||||||| |||||||||||||||||||||||||||||||||||  || |||||| |||||    
T  48138590 ttatttttcga-taaccaattaaaaattatgtttttggtggatgaaaataacgagagagaggag 48138652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 181 - 333
Target Start/End: Complemental strand, 46192383 - 46192231
Alignment:
Q  181 taaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaa 280  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||||||||| ||||| ||  ||||||    
T  46192383 taaaaaagtgagaatgtgttgtgaaaattcaatgaagatgtatatgatttaatttaagatatgaatcacaataattgtttttctattaatcatataaaaa 46192284  T
Q  281 ttatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaat 333  Q
     |||||||||| |||||||||| || |||| | | ||||||||||| ||||||    
T  46192283 atatgtttttgttggatgaaagtaacgagatagatgagattcaatctatcaat 46192231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 57 - 244
Target Start/End: Original strand, 2483666 - 2483847
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| |||  |||| ||||| | ||||||||||||||||||||||| | ||||||||     
T  2483666 aattaattattttaatttaaaatatatattttattgaatacttataggatactcgaaagatatacacaaatacttataagatacttcaaagagacgtatt 2483765  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatga 244  Q
    |||||   ||         ||| ||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  2483766 ctggagagagaaa------aattgtaaaaaagtgagactatgttgtgaaaatgcaatgaagatgtatatgattcaatttaagatatga 2483847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 57 - 289
Target Start/End: Original strand, 16817742 - 16817964
Alignment:
Q  57 aattaattattttaatttaaaa-tatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    ||||| |||||||||||||||| ||| |||||||||  ||||||||| |||  |||||| |||||  |||||||||||| ||||||||||| | ||||||    
T  16817742 aattagttattttaatttaaaaatatgtattttatcggatacttataggatactcgacaaataca--caaatacttatatgatacttcacaaatacgtat 16817839  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    ||||||| ||         ||  |||||| |||| ||  |||  ||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||    
T  16817840 cctggaaaaaac-------gatgggtaaataagtaagattgtactgtgaaaat-caatggagatgtatatgatttaatttaagat-tgaatcagtataat 16817930  T
Q  256 tgtttttcgattaaccaattaaaaattatgtttt 289  Q
    |||||||||||||| ||||| ||| |||||||||    
T  16817931 tgtttttcgattaatcaatttaaatttatgtttt 16817964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 24699810 - 24699882
Alignment:
Q  226 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatga 299  Q
    ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24699810 gattcaatttaagatatgaattactataattgtttttcga-taaccaattaaaaattatgtttttggtggatga 24699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 24699733 - 24699805
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagataca 120  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||||||    
T  24699733 gagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagatactcgacagataca 24699805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 9229569 - 9229491
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 134  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||| ||  |||||||||    
T  9229569 gaattaattattttaatttaaaatatatattttattggatacttataagataatcgacagatacacacggatacttata 9229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 321 - 426
Target Start/End: Original strand, 47277897 - 47278002
Alignment:
Q  321 tcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataa 420  Q
    |||||||||||| | ||| |||||||||| |||| |||||||||||| |||||||||||||   ||| |||||| ||||||||||| || ||||||| ||    
T  47277897 tcaatcaatcaacattaatcaaactttgttttgaattcttttattgaagcatttgttgatatcctaatatatgagtgaaaatagaaaattatttatacaa 47277996  T
Q  421 aaactt 426  Q
    ||||||    
T  47277997 aaactt 47278002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 45648455 - 45648231
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||   |||||||  |||  || ||||||||| |   |||||| |||||||||||||| |    
T  45648455 agtatcggaattaattattttaatttttaataaatattttatcgggtacttatgtgatactccacagatacataaggatacttctaagatacttcacaga 45648356  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 248  Q
     ||||||||| ||| |||       |||   ||||||||||||| |  |||||| |||||||| |  |||||||||||||||||||| ||||||| ||||    
T  45648355 tacgtatcctagaaaaaga------tgaggagtaaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgattcaattttagatatgcatca 45648262  T
Q  249 gtataattgtttttcgattaaccaattaaaa 279  Q
     || |||||||| ||| | ||||| ||||||    
T  45648261 atagaattgtttctcggtgaaccacttaaaa 45648231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 46192472 - 46192423
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagat 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46192472 aattaattattttaatttaaaatatatattttatcagatacttataagat 46192423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 34471659 - 34471761
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    ||||||||||||||||||| ||| | ||||||||||  ||||||||| |||  |  | ||||||| |  |||||||||||||||||||||||| ||||||    
T  34471659 gaattaattattttaattttaaaaaaatattttatctgatacttataggatacttcatagatacacaagaatacttataagatacttcacatatacgtat 34471758  T
Q  156 cct 158  Q
    |||    
T  34471759 cct 34471761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 6562470 - 6562382
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 146  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||| || ||| ||||| ||| ||| |||| | ||||||||||    
T  6562470 aattaattattttaatttaaaatatatattttatcggatgcttataagatc-tcaacaaatacacacatatatttattaaatacttcaca 6562382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 25482674 - 25482609
Alignment:
Q  216 agatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 281  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||||| || || ||||||||    
T  25482674 agatgtatatgattcaattttagatatgcatcaatataattgtttttcgatgaaacacttaaaaat 25482609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 385 - 490
Target Start/End: Original strand, 48138659 - 48138767
Alignment:
Q  385 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 480  Q
    ||||||||||| ||||||| |||||||||||||  |||||||    |||| |||||||||| ||| |||||||||| |||||||  ||| |||||| |||    
T  48138659 taacatatgaacgaaaatataatatgatttatacgaaaactttacattttttattttgatcacatatattattttt-tgtaaattgtgaattttatgatt 48138757  T
Q  481 atatagtatt 490  Q
    ||||||||||    
T  48138758 atatagtatt 48138767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 260
Target Start/End: Original strand, 45492049 - 45492258
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| |||||||||||||||||||||||| |||||| |||||  ||||||||| |||  || | || |||| |   |||||||||||||||||| ||||    
T  45492049 agtatcggaattaattattttaatttaaaaaatatatattatcggatacttatatgatactccataggtacacaatgatacttataagatacttcgcata 45492148  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 248  Q
     | ||||||| ||| |||         |||  |||||||||||| |  |||||| ||||||||   |||| |||||||||||||||| ||||||| || |    
T  45492149 tatgtatcctagaaaaagatgaagggaaat--taaaaaagtgagacaatgttgtaaaaattcaggagagacgtatatgattcaattttagatatgcatta 45492246  T
Q  249 gtataattgttt 260  Q
    ||  ||||||||    
T  45492247 gtcgaattgttt 45492258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 47277149 - 47277199
Alignment:
Q  175 gaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatat 225  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  47277149 gaatggtaaaaaagtgagattgtgttgtgaaaattcaatagagatgtatat 47277199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 3094258 - 3094303
Alignment:
Q  213 tggagatgtatatgattcaatttaagatatgaatcagtataattgt 258  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||    
T  3094258 tggagatgtatatgattcaatttaagatatgaattagtttaattgt 3094303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 3751600 - 3751503
Alignment:
Q  182 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||| |  ||||||||||| | | | ||||||||||||||||||||| ||||||| |||| || |||||||| ||||| || || ||||||    
T  3751600 aaaaaagtgagacaatgttgtgaaaacttagtagagatgtatatgattcaattttagatatgcatcaataaaattgtttctcgatgaatcacttaaaa 3751503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 417
Target Start/End: Original strand, 22201110 - 22201353
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||||||||||||| |||| |  |||| | |||||||| |||||||||||||| || ||||| |||| || ||| ||| |||||||| ||||| |||||     
T  22201110 tgaatggtaaaaaaatgagacaatgttctaaaaattcagtggagatgtatatgttttaattttagat-tgtatcggtagaattgtttctcgataaaccac 22201208  T
Q  274 ttaaaaattatgtttttggtggatgaaagcaaagag-agat-aggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgca 371  Q
    |||||| ||||| || |  |  ||||| | || ||| | || | || ||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| |     
T  22201209 ttaaaa-ttatgcttcttattaatgaaggtaatgaggaaatgaagatattcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatact 22201307  T
Q  372 tttgttgatactataacatatgaatgaaaatagaatatgatttata 417  Q
    | || ||||| | |||  |||||||||||||| |||||||||||||    
T  22201308 tctgctgatattctaatgtatgaatgaaaatataatatgatttata 22201353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 417
Target Start/End: Complemental strand, 22236711 - 22236468
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||||||||||||| |||| |  |||| | |||||||| |||||||||||||| || ||||| |||| || ||| ||| |||||||| ||||| |||||     
T  22236711 tgaatggtaaaaaaatgagacaatgttctaaaaattcagtggagatgtatatgttttaattttagat-tgtatcggtagaattgtttctcgataaaccac 22236613  T
Q  274 ttaaaaattatgtttttggtggatgaaagcaaagag-agat-aggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgca 371  Q
    |||||| ||||| || |  |  ||||| | || ||| | || | || ||||||| ||||||||||| ||||| ||||| ||||| | ||||| |||| |     
T  22236612 ttaaaa-ttatgcttcttattaatgaaggtaatgaggaaatgaagatattcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatact 22236514  T
Q  372 tttgttgatactataacatatgaatgaaaatagaatatgatttata 417  Q
    | || ||||| | |||  |||||||||||||| |||||||||||||    
T  22236513 tctgctgatattctaatgtatgaatgaaaatataatatgatttata 22236468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 7857938 - 7858053
Alignment:
Q  216 agatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagatag 315  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||| ||  | ||||| ||||||| ||| ||| | ||||||||  | ||  ||||| ||    
T  7857938 agatgtatatgattcaattttagatatgaaacagtagaattgtttctcattgaaccacttaaaaa-tatatttattgtggatgatggtaacaagagagag 7858036  T
Q  316 gagattcaatcaatcaa 332  Q
    |||||||||| ||||||    
T  7858037 gagattcaattaatcaa 7858053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 369
Target Start/End: Complemental strand, 42040561 - 42040377
Alignment:
Q  182 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaat 281  Q
    ||||||||||| |  |||||| |||||||| |  |||||||||||| ||||||| ||||||| |||| || |||||| | ||||| || || || |||||    
T  42040561 aaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgactcaattttagatatgcatcaatagaattgtctctcgatgaaacactt-aaaat 42040463  T
Q  282 tatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatg 369  Q
    |||  || | ||||||||| |||  |||||||  | |||||| | |||||| | || | ||| ||||| |||||||||||||||||||    
T  42040462 tatacttcttgtggatgaacgcatcgagagat--gtgattcagttaatcaacattagataaaatttgtgttgagttcttttattgatg 42040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 47843879 - 47843793
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 260  Q
    |||| ||||||||||| || |  |||||| |||| ||| | ||||||||||||||||||||| ||||||| |||| || ||||||||    
T  47843879 tgaagggtaaaaaagttagacaatgttgtaaaaactcagtagagatgtatatgattcaattttagatatgcatcaataaaattgttt 47843793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 279
Target Start/End: Complemental strand, 43495977 - 43495761
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    ||||||||||||| ||||||||| | |||||||| |  ||||||||| |||  ||   ||||||| | || |||||||||||||||||||| | | ||||    
T  43495977 gaattaattatttaaatttaaaaaaaatattttaacggatacttatacgatactctgtagatacacataa-tacttataagatacttcacagatatgtat 43495879  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    |||  || |||       ||||  ||||||||||||| |  | |||| || || || | ||||| ||||||||||||||| ||||||| |||| || |||    
T  43495878 cctataaaaagg------tgaagagtaaaaaagtgagacaatcttgtaaacatccagtagagatatatatgattcaattttagatatgcatcactaaaat 43495785  T
Q  256 tgtttttcgattaaccaattaaaa 279  Q
    ||||| ||||| ||||| ||||||    
T  43495784 tgtttctcgatgaaccacttaaaa 43495761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 40836439 - 40836503
Alignment:
Q  215 gagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||| ||||||||||||||| ||||||| |||| || |||||||| ||||| ||||| ||||||    
T  40836439 gagatctatatgattcaattttagatatgcatcactagaattgtttctcgatgaaccacttaaaa 40836503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 6e-95; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 41 - 417
Target Start/End: Original strand, 44746290 - 44746663
Alignment:
Q  41 atccatagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatac 140  Q
    ||||| |||||||  ||||||||||||||||||||||||||||  |||||| ||||||||||| ||  |||||| ||| | ||| ||| |||||||||||    
T  44746290 atccacagagtatcagaattaattattttaatttaaaatatat--tttatcgaatacttataaaatactcgacatatatacacatatatttataagatac 44746387  T
Q  141 ttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagat 240  Q
    |||||| | ||||||| | ||| |||       | || |||| |||| |||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  44746388 ttcacagatacgtatcattgaaaaagaagaaatt-aagggtataaaaatgagactttgttgtgaaaattcaattgagatgtatatgattcaatttaagat 44746486  T
Q  241 atgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaac 340  Q
    || ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||||||||| ||| | |||||    
T  44746487 ataaattactataattgtttttcgattaaccaattataaattatgtttttggtggatgaaagtaacgagagagaggagattcaatcaaccaacattaaac 44746586  T
Q  341 aaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 417  Q
    ||||||||| ||||||| |||||||||||||||||||||||   ||| ||||||||||||||| |||||||||||||    
T  44746587 aaactttgttttgagtttttttattgatgcatttgttgatatcctaagatatgaatgaaaataaaatatgatttata 44746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 179 - 427
Target Start/End: Complemental strand, 43770673 - 43770428
Alignment:
Q  179 ggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaa 278  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||    
T  43770673 ggtaaaaatgtgagactgtgttgtgaaaattcaatgaagatgtatatgattcaatttaagatatgaatcactacaattgtctttcgattaaccagttaaa 43770574  T
Q  279 aattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttg 378  Q
    |||| |||||||| |||||| |||||| |||||  || |||||||||||||||| | ||||||||| |||| ||||||| ||||||| ||| ||||||||    
T  43770573 aattgtgtttttgttggatgtaagcaacgagag--agaagattcaatcaatcaacattaaacaaac-ttgttttgagttattttattaatgaatttgttg 43770477  T
Q  379 atactataacatatgaatgaaaatagaatatgatttatataaaaacttt 427  Q
    |||   |||| ||||||  | ||||||||||||||||||  ||||||||    
T  43770476 atatcctaacgtatgaaatataatagaatatgatttatacgaaaacttt 43770428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 47 - 302
Target Start/End: Complemental strand, 34075392 - 34075140
Alignment:
Q  47 agagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 146  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||  ||||| |||||| | | |||||||||||||||||||||    
T  34075392 agagtatcggaattaattattttaatttaaaatatatattttatcggatacttatgagatactcgacggatacacatagatacttataagatacttcaca 34075293  T
Q  147 tagacgtatcctggaagaagnnnnnnntgaatggtaaaaaag-tgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaa 245  Q
     |||||||||||| |||||        ||||  ||||||||  ||||  |||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  34075292 aagacgtatcctg-aagaa--aaaaaatgaagtgtaaaaaaaatgagattgtgttatgaaaattcaattgagatgtatacgattcaatttaagatatgaa 34075196  T
Q  246 tcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaag 302  Q
    ||| ||||| || ||||||| |||| |||||||||||||||||||||||||||||||    
T  34075195 tcactataactgcttttcga-taacaaattaaaaattatgtttttggtggatgaaag 34075140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 199 - 494
Target Start/End: Original strand, 21619592 - 21619888
Alignment:
Q  199 ttgtgaaaattcaatggagatgtatatgattcaattt-aagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggat 297  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||| ||||||    
T  21619592 ttgtgaaaattcaatgaagatgtatatgattcaattttaagatatgaatgagtataattgtttttcgattaatcaatgaaaaattattttttttgtggat 21619691  T
Q  298 gaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatg 397  Q
    ||| | || |||||  || | |||||||||||||| | ||||||||||||   ||||||| |||||||||||||  |||| |||   ||||||||||||     
T  21619692 gaaggtaatgagag--agaaaattcaatcaatcaacattaaacaaacttttatttgagttattttattgatgcacgtgttaatatcctaacatatgaata 21619789  T
Q  398 aaaatagaatatgatttatataaaaactt---ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaag 494  Q
    |||||||||| || ||||   ||||  ||   ||||||||||||||| |||||||||||||| |||  ||  |||||||||| ||| ||||||| |||||    
T  21619790 aaaatagaatgtgtttta-cgaaaattttatattttatattttgatcacatgtattatttttttgtcgattgtgacttttatgattgtatagtaataaag 21619888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 179 - 417
Target Start/End: Complemental strand, 22198980 - 22198747
Alignment:
Q  179 ggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaa 278  Q
    ||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  22198980 ggtaaaaaagtgaggttgtgttgtaaaaattaaatgaagatgtatatgattcaatttaagacacgaatcactataattgtttttcgattaaccaattaaa 22198881  T
Q  279 aattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttg 378  Q
    ||| || |||||||||||  |||| || ||||   |||||||||| |||||||| | |||||||||||||| |||||||||    || |  |||||||||    
T  22198880 aatcatatttttggtggacaaaagtaatgaga-tcaggagattcagtcaatcaacattaaacaaactttgttttgagttct----ttaacacatttgttg 22198786  T
Q  379 atactataacatatgaatgaaaatagaatatgatttata 417  Q
    |||   |||||||| ||||||||||  ||||||||||||    
T  22198785 atatcctaacatataaatgaaaatacgatatgatttata 22198747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 204 - 401
Target Start/End: Original strand, 34733793 - 34733988
Alignment:
Q  204 aaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagc 303  Q
    |||| ||||||||||| ||| ||||| || |||| |||| |||||| |||||| |||||| |||||||||||||| ||||| ||||||||||||||| |     
T  34733793 aaaaatcaatggagatatatgtgatttaagttaaaatataaatcagcataattatttttcaattaaccaattaaatattatatttttggtggatgaaggt 34733892  T
Q  304 aaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaa 401  Q
    || || ||  || | ||| ||| ||||||   |||||||| ||||| || |||  |||||||||||||||| ||||||   |||||||||||||||||    
T  34733893 aacgaaag--agaaaattaaataaatcaacgttaaacaaaatttgttttaagtgtttttattgatgcatttattgatatcctaacatatgaatgaaaa 34733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 47724816 - 47724738
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 134  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| || ||||||||||    
T  47724816 gaattaattattttaatttaaaatatatattttatcggatacttataagataatcgacagatacacacgaatacttata 47724738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 10037976 - 10037871
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| |||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||| ||||| |||||     
T  10037976 tgaagggtaaaaaagtgagacaatgttgcgaaaattcaatggagatgtatatgattcaattttagatatgcatcagtagatttgtttctcgatgaaccac 10037877  T
Q  274 ttaaaa 279  Q
    ||||||    
T  10037876 ttaaaa 10037871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 126 - 279
Target Start/End: Original strand, 53586369 - 53586516
Alignment:
Q  126 atacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatat 225  Q
    ||||||||||||||||||||| | ||||||||| ||| |||       |||| ||||||| |||||| |  |||||| || ||||||| |||||||||||    
T  53586369 atacttataagatacttcacagatacgtatcctagaaaaaga------tgaagggtaaaatagtgagacaatgttgtaaacattcaatagagatgtatat 53586462  T
Q  226 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||||| ||||||| |||| ||||||||||| ||||| ||| | ||||||    
T  53586463 gattcaatttcagatatgcatcactataattgtttctcgatgaactacttaaaa 53586516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 423
Target Start/End: Original strand, 44987299 - 44987522
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtgga 296  Q
    |||||| |||||||| | |||||||| |||||||||||| ||||||| ||| ||| |||||||| || || ||| | || ||||||||  || | |||||    
T  44987299 tgttgtaaaaattcactcgagatgtacatgattcaattttagatatgcatcggtagaattgtttctcaatgaactactt-aaaattatacttcttgtgga 44987397  T
Q  297 tgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaat 396  Q
    |||| | || || ||| | |||||||||| |||||| | || ||||| ||||  | ||||||||||| |||||  | |||||| |   |||||||||| |    
T  44987398 tgaaggtaacgaaagagaagagattcaattaatcaacattatacaaaatttg--tcgagttcttttaatgatgtttatgttgaaatcttaacatatgatt 44987495  T
Q  397 gaaaatagaatatgatttatataaaaa 423  Q
    |||||||  ||||||| ||||||||||    
T  44987496 gaaaatatgatatgatctatataaaaa 44987522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 35823578 - 35823460
Alignment:
Q  307 gagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 406  Q
    |||||| | |||||||||| |||||| | || ||||| ||||| ||||||||||||| |||  | | | ||||||   ||||||||||||||||||| ||    
T  35823578 gagagagaagagattcaattaatcaacattatacaaaatttgtgttgagttcttttaatgacacttctattgatatcctaacatatgaatgaaaataaaa 35823479  T
Q  407 tatgatttatataaaaact 425  Q
    ||||||||||| |||||||    
T  35823478 tatgatttataaaaaaact 35823460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 43770873 - 43770811
Alignment:
Q  44 catagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagat 106  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  43770873 catagagaattaaaattaattattttaatttaaaatatatattttatcggatacttataagat 43770811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 385 - 490
Target Start/End: Original strand, 10632247 - 10632355
Alignment:
Q  385 taacatatgaatgaaaatagaatatgatttatataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatt 480  Q
    ||||||||||||||||||| |||||||||||||  ||||||||    |||  ||||||||| |||||||||||||| |||||||  |||| ||||| |||    
T  10632247 taacatatgaatgaaaataaaatatgatttatacgaaaactttacatttttaattttgatcacatgtattattttt-tgtaaattgtgacatttatgatt 10632345  T
Q  481 atatagtatt 490  Q
    ||||| ||||    
T  10632346 atataatatt 10632355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 369
Target Start/End: Complemental strand, 19721931 - 19721627
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    |||||||||||||||||||  |||| ||||||||||  ||||||||  |||  || ||||||||| |   ||| || |||||||||||||||| ||||||    
T  19721931 gaattaattattttaatttttaataaatattttatcggatacttatgtgatactccacagatacacaatgatatttctaagatacttcacatacacgtat 19721832  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    ||| ||| |||       ||||  ||||||||||||| |  |||||| |||||||| |  |||| ||||||| | |||||  |||||| |||| || |||    
T  19721831 cctagaaaaag------atgaagagtaaaaaagtgagacgatgttgtaaaaattcattatagatatatatgacttaattttggatatgcatcaatagaat 19721738  T
Q  256 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgag 355  Q
    ||||| || ||||| || || ||||||||  || | ||||||||| | |  |||||||  | |||||||| |||||| | || | ||| ||||| |||||    
T  19721737 tgtttctcaattaaacactt-aaaattatacttcttgtggatgaacgtagcgagagat--gtgattcaattaatcaacattagataaaatttgtgttgag 19721641  T
Q  356 ttcttttattgatg 369  Q
    |||||||| |||||    
T  19721640 ttcttttaatgatg 19721627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 409
Target Start/End: Original strand, 4775801 - 4776034
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| |||||||||||||| |  |||||||| |||| | |||| ||||||||||| |||||| ||||||| ||||   ||||||||| ||||| | |||     
T  4775801 tgaagggtaaaaaagtgagacaatgttgtgataatttagtggaaatgtatatgat-caattttagatatgcatcaaagtaattgtttctcgataatccac 4775899  T
Q  274 ttaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatt 373  Q
    |||||| ||||  || | |||||||||   |  |||| | |||||||| | | ||||   | || ||||| ||||| ||||||||||| | |||||| |     
T  4775900 ttaaaa-ttatacttattgtggatgaagttagcgagaaagaggagatttagttaatcggcattagacaaaatttgtgttgagttctttcaatgatgctta 4775998  T
Q  374 tgttgatactataacatatgaatgaaaatagaatat 409  Q
    |||||||| ||||||||||| ||||||||| |||||    
T  4775999 tgttgatattataacatatggatgaaaatataatat 4776034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 365
Target Start/End: Complemental strand, 25204522 - 25204405
Alignment:
Q  256 tgtttttcgattaaccaattaaaaattatg-----tttttggtggatgaaagcaa--agagagat-aggagattcaatcaatcaatagtaaacaaacttt 347  Q
    ||||||||||||||||||||||||||| ||     |||||  |||||||||| ||  |||||||| | ||||||||||||||||| | |||||||| |||    
T  25204522 tgtttttcgattaaccaattaaaaattgtgtttttttttttatggatgaaagtaaccagagagatgatgagattcaatcaatcaacattaaacaaaattt 25204423  T
Q  348 gtattgagttcttttatt 365  Q
    || |||| ||||||||||    
T  25204422 gttttgaattcttttatt 25204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 38948694 - 38948586
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||| |||| ||||||||||||||||||||||||||||||  |||    ||||||||   ||| ||||||| ||  ||||||||| |||||||||||     
T  38948694 gagtatcggaactaattattttaatttaaaatatatatttta--aaa----tataagatatccgatagatacacacggatacttatacgatacttcacag 38948601  T
Q  148 agacgtatcctggaa 162  Q
    ||||||||| |||||    
T  38948600 agacgtatcttggaa 38948586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 45774026 - 45774124
Alignment:
Q  181 taaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||||||| |  |||||| |||||||| |  |||||||||||||||||||| ||||||  |||| || |||||||| ||||| ||||| ||||||    
T  45774026 taaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgattcaattttagatatacatcaatagaattgtttctcgatgaaccacttaaaa 45774124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 2295266 - 2295375
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||| ||| ||||  |||  || ||||||||| |   |||||| |||||||||||||| |    
T  2295266 agtatcggaattaattattttaatttttaataaatattttatcagatatttatgggatattccacagatacacaatgatacttctaagatacttcacaga 2295365  T
Q  149 gacgtatcct 158  Q
     |||||||||    
T  2295366 cacgtatcct 2295375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 28102098 - 28102017
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaa 278  Q
    |||| |||||||||| | ||||||||||| ||||||||| | |||||||| |||| |||||||| ||||| ||||| |||||    
T  28102098 tgttatgaaaattcagttgagatgtatattattcaattttatatatgaataagtaaaattgtttctcgatgaaccacttaaa 28102017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 22199070 - 22199015
Alignment:
Q  51 tattggaattaattattttaatttaaaatatatattttatcaaatacttataagat 106  Q
    ||||| ||||||||||||||||||||||| ||| |||||||  |||||||||||||    
T  22199070 tattgaaattaattattttaatttaaaatgtattttttatcggatacttataagat 22199015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 21619458 - 21619544
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatactt 142  Q
    ||||||||||||||||||||||| | || |||||||   |||||||| |||  || ||| ||||||| |||||||||||| ||||||    
T  21619458 gaattaattattttaatttaaaaaaaatgttttatcggttacttatatgatactccacatatacaaataaatacttataaaatactt 21619544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 27675450 - 27675536
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 260  Q
    |||| ||||||| |||||| |  ||||||||| |||||   ||||||||||||||||||||| ||||||| |||| || ||||||||    
T  27675450 tgaagggtaaaatagtgagacaatgttgtgaagattcagcagagatgtatatgattcaattttagatatgcatcaatagaattgttt 27675536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 35823700 - 35823602
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaacca 272  Q
    |||| ||||| |||||||| |  |||||||||||   | |||| |||||||| ||||||||| |||||||||| |||| |||||||| ||||| |||||    
T  35823700 tgaagggtaagaaagtgagacaatgttgtgaaaaaatattggaaatgtatataattcaattttagatatgaattagtagaattgtttctcgataaacca 35823602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 35103620 - 35103543
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattg 257  Q
    ||||||||||||| |  |||||| |||||||| |  | |||||||||||||||||| ||||||| |||| ||||||||    
T  35103620 gtaaaaaagtgagacaatgttgtaaaaattcattataaatgtatatgattcaattttagatatgcatcattataattg 35103543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 47724735 - 47724673
Alignment:
Q  427 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  47724735 ttttttattttgatcacatgtattattttt-tgtaaattgcgacttttatgattatatagtatt 47724673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 369
Target Start/End: Complemental strand, 53018632 - 53018485
Alignment:
Q  219 tgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggag 318  Q
    ||||||||||||||||| ||||||| |||| || |||||||| || || || || || ||||||||  || | |||||||||  || || |||||||| |    
T  53018632 tgtatatgattcaattttagatatgcatcaatagaattgtttctcaatgaatcagtt-aaaattatacttattgtggatgaa--catagcgagataggtg 53018536  T
Q  319 attcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatg 369  Q
    ||||| | |||||| | |||| ||| ||| | ||||||||||||| |||||    
T  53018535 attcagttaatcaacattaaataaaatttatgttgagttcttttaatgatg 53018485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 54163489 - 54163430
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacaga 116  Q
    |||||||||||||||| |||||||||||||||||   ||||||||| |||  ||||||||    
T  54163489 aattaattattttaatgtaaaatatatattttattggatacttatatgatattcgacaga 54163430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 6255296 - 6255346
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagat 106  Q
    ||||||||||||||||||| |||||||| ||||| |  |||||||||||||    
T  6255296 gaattaattattttaattttaaatatattttttaccggatacttataagat 6255346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 47923170 - 47923080
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||||||||||||||| ||| | ||||||||||  ||||||||| |||  |  ||||||||| |   |||||| |||||||||||||||    
T  47923170 aattaattattttaattttaaaaaaatattttatcggatacttatatgatatttcacagatacacaatgatacttctaagatacttcacat 47923080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 2243087 - 2243042
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttat 101  Q
    |||||||||||||||||||  |||| |||||||||| |||||||||    
T  2243087 gaattaattattttaatttttaataaatattttatcgaatacttat 2243042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 38947745 - 38947679
Alignment:
Q  386 aacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgta 448  Q
    |||||||||||||||||||||||| |||||||  |||| ||    ||||||||||||||| ||||||    
T  38947745 aacatatgaatgaaaatagaatataatttatacgaaaattttatattttatattttgatcacatgta 38947679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 57 - 427
Target Start/End: Complemental strand, 31489749 - 31489382
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  |  ||||||||| |||||||||| |||||||| |||||||||| ||||    
T  31489749 aattaattattttaatttaaaatatatattttatcatatacttataagatattttacagatacacacaaatacttgtaagatacgtcacatagacatatc 31489650  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 256  Q
    ||| || ||        |||| |||||||| |||||   || |||||||||||||||| | |||||||||||||||||||||| | |||||||||| |||    
T  31489649 ctgcaaaaa------aatgaagggtaaaaatgtgagagcgtattgtgaaaattcaatgaa-atgtatatgattcaatttaagacacgaatcagtatgatt 31489557  T
Q  257 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaag---caa-agagagataggagattcaatcaatcaatagtaaacaaactttgtatt 352  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |   ||| |||||||||  ||||| |||||||||| | |||||||| ||||| ||    
T  31489556 gtttttcgattaaccaattaaaatttatgtttttggtggatgaaggtgacaagagagagataatagatttaatcaatcaacattaaacaaattttgtttt 31489457  T
Q  353 gagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 427  Q
    ||||||||||||||||||||||| |||||   ||||||||||||||||||| |||||||||||||  ||||||||    
T  31489456 gagttcttttattgatgcatttgctgatatcttaacatatgaatgaaaataaaatatgatttatacgaaaacttt 31489382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 56 - 406
Target Start/End: Complemental strand, 24611686 - 24611339
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||  |||||| ||||| | | |||||| || |||||| |||| ||||||||    
T  24611686 gaattaattattttaatttaaaatacatattttatcggatacttataagatactcgacaaatacacatagatacttgtacgatactacacagagacgtat 24611587  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    ||||| | ||        |||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  24611586 cctgggaaaa-----aaatgaagggtaaaaaagtgagattgtgttgtgaaaaatcaatggagatgtatatgattcaatttaatatatgaatcactataat 24611492  T
Q  256 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaatagtaaacaaactttgtattg 353  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| ||  || |||| ||||||||||||||||||| | |||||||||||  | |||    
T  24611491 tgtttttcaattaaccaattaaaaattatgtttttggtggttgaaagtaacgagggagagaggagattcaatcaatcaacattaaacaaacttgattttg 24611392  T
Q  354 agttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaa 406  Q
    |||||||||||||| ||||||||||||  | ||| |||||||| |||||||||    
T  24611391 agttcttttattgaagcatttgttgattttctaatatatgaataaaaatagaa 24611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 57 - 427
Target Start/End: Original strand, 50387090 - 50387442
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||  | |||| ||||| ||| |||||||||||||| |||||| |||||||      
T  50387090 aattaattattttagtttaaaatatatattttatcgaatacttataagatatttgacatatacacacatatacttataagataattcacaaagacgta-- 50387187  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 256  Q
        || ||         |||  |||||||| ||||  |||||||| ||||||||||| |    ||||||||||||||||| ||||||| || |||||||    
T  50387188 ----aaaaaaaaaac---gaaaagtaaaaaaatgagtttgtgttgttaaaattcaatgta----tatatgattcaatttaaaatatgaaccactataatt 50387276  T
Q  257 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagt 356  Q
     |||||  |||||||||||||||||||||||||||||||||||||| || ||||||  |||||||||||||||||| | |||||||||||| | | ||||    
T  50387277 attttt--attaaccaattaaaaattatgtttttggtggatgaaagtaacgagaga--ggagattcaatcaatcaacattaaacaaactttatct-gagt 50387371  T
Q  357 tcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 427  Q
    || |||||||||| ||||||| ||| | |||||||| ||||||||||||||||||||||||  ||||||||    
T  50387372 tcctttattgatgtatttgttaatattctaacatataaatgaaaatagaatatgatttatacgaaaacttt 50387442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 56 - 312
Target Start/End: Original strand, 43471675 - 43471921
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||||||  |||||||||||| ||| ||||||||||||||||||| | ||||||||    
T  43471675 gaattaattattttaattttaaatatatattttatcggatacttataagatactcgacagatacacacagatacttataagatacttcatagagacgtat 43471774  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    |||| || ||        ||||  ||||||||   | |   ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||     
T  43471775 cctgaaaaaa------catgaaatgtaaaaaaaaaaag---tgttgtgaaaattcaattgagatgtatatgattcaatttaagatatgaatcactataac 43471865  T
Q  256 tgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagaga 312  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||    
T  43471866 tgtttttcga-taaccaattaaaaattatgtttttgttggatgaaagtaacgagaga 43471921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 59 - 305
Target Start/End: Original strand, 47014160 - 47014402
Alignment:
Q  59 ttaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatcct 158  Q
    |||||||||||| |||||||||||||||||||   |||| ||||||||  |||||||||||  | | ||||||||||||||||||||| |||||||||||    
T  47014160 ttaattattttactttaaaatatatattttattggatacctataagatactcgacagatacgcatagatacttataagatacttcacaaagacgtatcct 47014259  T
Q  159 ggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgt 258  Q
      ||||||       | |   |||||||||||||  | |||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||    
T  47014260 --aagaagaaaaaa-taaggagtaaaaaagtgagaatatgttgtgaaaattcaatgaagatgtatatgattcaattta-gatataaatcattataattgt 47014355  T
Q  259 ttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaa 305  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  47014356 ttttcgattaaccaattaaaaattatgttttgggtggatgaaagcaa 47014402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 47 - 332
Target Start/End: Original strand, 24120952 - 24121235
Alignment:
Q  47 agagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 146  Q
    ||||||| | |||||||||||||||||||||||||||||||||||  || ||||||||||  |||||||||||| | | |||||| ||||||||||||||    
T  24120952 agagtatcgaaattaattattttaatttaaaatatatattttatcggatgcttataagatactcgacagatacacatagatacttgtaagatacttcaca 24121051  T
Q  147 tagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaat 246  Q
    | |||||||| || || ||        |||| ||||||||||||||  ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  24121052 t-gacgtatcttgaaaaaa-----aaatgaagggtaaaaaagtgagaatgtgttgtgaaaaatcaatggaggtgtatttgattcaatttaagatatgaat 24121145  T
Q  247 cagtataattgtttttcgatt-aaccaattaaaaattatgtttttg-gtggatgaaagcaaagag--agataggagattcaatcaatcaa 332  Q
    || | ||||||||||||| || ||||||||||||||| |||||||  || |||||| | || |||  ||| |||||||||||||||||||    
T  24121146 cactgtaattgtttttcgctttaaccaattaaaaattgtgtttttttgttgatgaatgtaacgagggagagaggagattcaatcaatcaa 24121235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 218 - 490
Target Start/End: Original strand, 21842588 - 21842863
Alignment:
Q  218 atgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaag--caaagagagatag 315  Q
    |||||||||||| |||||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||||||||| ||||  | |||||||| ||    
T  21842588 atgtatatgattaaatttaagatatgaatcgctataattgtatttcgattaaccaaataaaaattatatttttggtggataaaagtaccaagagagaaag 21842687  T
Q  316 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgattta 415  Q
    || |||||||||||||| | |||| ||||||||| |  |||| ||||||||||| |||||||||||    ||| |||||||||||||| ||||| ||||     
T  21842688 gatattcaatcaatcaacattaaataaactttgtttatagtttttttattgatgtatttgttgatatccaaacttatgaatgaaaataaaatataatttt 21842787  T
Q  416 tataaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    ||   | |||||     || |||||||||  ||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  21842788 tacgtagactttacaacttttattttgat--catgtattatttttc-gtaaatcgtgacttttatgattatatagtatt 21842863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 218 - 490
Target Start/End: Original strand, 21858231 - 21858504
Alignment:
Q  218 atgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagatagga 317  Q
    |||||||||||| |||||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||||||||| |||| |  |||||| ||||    
T  21858231 atgtatatgattaaatttaagatatgaatcgctataattgtatttcgattaaccaaataaaaattatatttttggtggataaaagtaccgagagagagga 21858330  T
Q  318 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 417  Q
     |||||||||||||| | |||| ||||||||| |   ||| ||||||||||| | |||||||||    ||| |||||||||||||||||||| |||| ||    
T  21858331 tattcaatcaatcaacattaaataaactttgtttattgtttttttattgatgtagttgttgatatccaaacttatgaatgaaaatagaatataattttta 21858430  T
Q  418 taaaaacttt----tttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
       | |||||     || |||||||||  ||||||||||||||| ||||||  |||||||||| |||||||||||||    
T  21858431 cgtagactttacaacttttattttgat--catgtattatttttc-gtaaatcgtgacttttatgattatatagtatt 21858504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 1341786 - 1341626
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| ||||||||||| |   ||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||    
T  1341786 tgaagggtaaaaaagttatattgtgttgtgaaaattcaatagagatgcatatgattcattttaagatatgaatcattataattgtttttcgattaactaa 1341687  T
Q  274 ttaaaaattatgtttttggtggatgaaagca--aagagagataggagattcaatcaatcaa 332  Q
    |||||||||||| ||| |||||||||||| |  ||| |||  |||||||||||| ||||||    
T  1341686 ttaaaaattatgctttgggtggatgaaagtaacaagtgagggaggagattcaataaatcaa 1341626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 318 - 490
Target Start/End: Original strand, 47014501 - 47014676
Alignment:
Q  318 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 417  Q
    ||||||| ||||||| | ||||| |||||||| || ||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||     
T  47014501 gattcaaccaatcaacattaaacgaactttgtttttagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatcgaatatgatttatg 47014600  T
Q  418 taaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
      ||| |||    |||| ||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||    
T  47014601 cgaaatctttacattttttattttgatcgcatgtattattttt-tgtaaattataacttttatgattatatagtatt 47014676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 318 - 490
Target Start/End: Original strand, 21853839 - 21854013
Alignment:
Q  318 gattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 417  Q
    ||||||||||||||| | |||| ||| ||||| | |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  21853839 gattcaatcaatcaacattaaataaaatttgtttagagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatagaatatgatttata 21853938  T
Q  418 taaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
      |  ||||     ||| ||||||||||  |||||||| ||||||||||||  |||||||||| |||||||||||||    
T  21853939 -gatcacttcacaatttttattttgatcatatgtatta-ttttctgtaaatcgtgacttttatgattatatagtatt 21854013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 2111315 - 2111426
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    ||||||| |||||||||||||||||||||| |||||||||||||  |||||||||||||  |||| ||||||| ||| ||||||||||||||||||| |     
T  2111315 gagtattagaattaattattttaatttaaa-tatatattttatcggatacttataagatactcgatagatacacacagatacttataagatacttcatag 2111413  T
Q  148 agacgtatcctgg 160  Q
    |||||||||||||    
T  2111414 agacgtatcctgg 2111426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 35433397 - 35433480
Alignment:
Q  51 tattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 134  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||| |||||||||    
T  35433397 tattagaattaattattttaatttaaaatatatattttatcggatacttataagataatcgacagatacacacagatacttata 35433480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 12176718 - 12176632
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 134  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||  |||||||||    
T  12176718 gagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagataatcgacagatacacacggatacttata 12176632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 20619294 - 20619452
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtgga 296  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||| || ||||||||| ||||||||| ||||| || |||||||| ||| | |||||    
T  20619294 tgttgtgaaaattcagtggaaatgtatatgattcaattttagatatgcataagtataattatttttcgatcaaccactt-aaaattatatttcttgtgga 20619392  T
Q  297 tgaaagcaaagagagatag-gagattcaatcaatcaatagtaaacaaactttgtattgag 355  Q
    ||||   | ||||||| || |||||||||| || || || || ||||| |||||||||||    
T  20619393 tgaagagagagagagagagagagattcaattaaccactaatagacaaaatttgtattgag 20619452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 36172162 - 36172084
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttata 134  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||  |||||||||    
T  36172162 gaattaattattttaatttaaaatatatattttatcggatacttataagatgatcgacagatacacacggatacttata 36172084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 244 - 380
Target Start/End: Original strand, 8913548 - 8913685
Alignment:
Q  244 aatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagca--aagagagataggagattcaatcaatcaatagtaaaca 341  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||  |  | |  |||||||| ||   |||||||||||||| |  ||| |    
T  8913548 aatcaatataattgtttttcgattaaccaattaaaaattatg-ttttggttgactagggtaagaagagagagagacaattcaatcaatcaacataaaata 8913646  T
Q  342 aactttgtattgagttcttttattgatgcatttgttgat 380  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  8913647 aactttgttttgagtttttttattgatgcatttgttgat 8913685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 29324097 - 29324196
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||||||||||  |||||| ||| ||||||  |||||||||| ||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||    
T  29324097 gtaaaaaagtgaggcaatgttgtaaaacttcaataaagatgtatatcattcaattttagatatgcatcaatataattgtttctcgatgaaccacttaaaa 29324196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 16343066 - 16343127
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagata 118  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  16343066 aattaattcttttaatttaaaatatatattttatcggatacttataagataatcgacagata 16343127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 278
Target Start/End: Complemental strand, 27164258 - 27164037
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| ||||||||||||||  ||||  || ||||||||||||  ||||||||  |||  || | ||||||| |   |||||||||||||||||||||||    
T  27164258 agtatcggaattaattatttacatttttaaaatatattttatctgatacttattggatactccatagatacacaaggatacttataagatacttcacata 27164159  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 248  Q
     ||||||||| ||| |||       |||| || ||||||||||| |   |||||  ||||||| | ||||||||||||||||||||| ||||||| ||||    
T  27164158 tacgtatcctagaa-aaga------tgaaggg-aaaaaagtgagacaacgttgtagaaattcagtagagatgtatatgattcaattttagatatgcatca 27164067  T
Q  249 gtataattgtttttcgattaaccaattaaa 278  Q
     ||||||| ||| ||||| ||||| |||||    
T  27164066 atataattatttctcgatgaaccacttaaa 27164037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 714 - 853
Target Start/End: Complemental strand, 37983597 - 37983459
Alignment:
Q  714 tgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatt 813  Q
    |||||||||| |  |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |    
T  37983597 tgaaaagaaatccgaagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact 37983499  T
Q  814 tgtggtaacaaattcatagaagccaacccattcatctctg 853  Q
    ||||||||| ||| |||||||||||| |||||||||||||    
T  37983498 tgtggtaactaatgcatagaagccaatccattcatctctg 37983459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 317 - 427
Target Start/End: Complemental strand, 53530673 - 53530563
Alignment:
Q  317 agattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttat 416  Q
    ||||||||| |||||||| |||||||| ||||| ||||||||||||| | || | | || | |||  |||| |||||||||||||| |||||||||||||    
T  53530673 agattcaattaatcaatattaaacaaaatttgtgttgagttcttttaataatacttctgctaatatcataagatatgaatgaaaatcgaatatgatttat 53530574  T
Q  417 ataaaaacttt 427  Q
    |  ||||||||    
T  53530573 acgaaaacttt 53530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 728 - 853
Target Start/End: Complemental strand, 17688342 - 17688218
Alignment:
Q  728 aagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatttgtggtaacaaatt 827  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||| |||| |||| | |||  | | | ||| || ||| |||||||||| |||     
T  17688342 aagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaacttgtggtaactaatg 17688244  T
Q  828 catagaagccaacccattcatctctg 853  Q
    |||||||||||| |||||||||||||    
T  17688243 catagaagccaatccattcatctctg 17688218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 489
Target Start/End: Original strand, 24121239 - 24121372
Alignment:
Q  359 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattt 454  Q
    |||||||||||||||||||||| |  ||| |||||||| ||||||||||||| |||||   |||| ||    ||||||||||||||  ||| ||||||||    
T  24121239 ttttattgatgcatttgttgattccctaatatatgaataaaaatagaatatgttttattcgaaaattttatattttatattttgataacatatattattt 24121338  T
Q  455 ttctgtaaatgatgacttttataattatatagtat 489  Q
    ||  ||||||  |||||||||| ||||||||||||    
T  24121339 tt-ggtaaattgtgacttttatgattatatagtat 24121372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 20819092 - 20819196
Alignment:
Q  51 tattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacataga 150  Q
    |||| |||| |||||||||  ||||||||||||||||||||  |||||||||||||  ||||| |||||| | | |||||||||| ||| |||||| |||    
T  20819092 tattagaataaattatttttctttaaaatatatattttatcggatacttataagatactcgacggatacacatagatacttataaaatatttcacaaaga 20819191  T
Q  151 cgtat 155  Q
     ||||    
T  20819192 ggtat 20819196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 2111477 - 2111558
Alignment:
Q  239 atatgaatcagtataattgttttt-cgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagat 320  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||  |||| || |||||| |||||||    
T  2111477 atatgaatcactataattgttttttcgat-aaccaattaaaaattatgttttttgtggaataaagtaacgagagagaggagat 2111558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 38489816 - 38489734
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||| || ||||| | ||||||||||||||||||||| ||||||| || | ||||||||||| ||||| ||||| ||||||    
T  38489816 tgttgtaaacattcagtagagatgtatatgattcaattttagatatgcataactataattgtttctcgatgaaccacttaaaa 38489734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 43471932 - 43471974
Alignment:
Q  385 taacatatgaatgaaaatagaatatgatttatataaaaacttt 427  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  43471932 taacatatgaatgaaaatagaatatgatttatatgaaaacttt 43471974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 45472615 - 45472701
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 266  Q
    |||||||||| || |  |||||| || ||||||| ||||||||||||||||||||| ||||||| |||| || |||||||| |||||    
T  45472615 gtaaaaaagttagacaatgttgtaaacattcaatagagatgtatatgattcaattttagatatgcatcactagaattgtttctcgat 45472701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 490
Target Start/End: Original strand, 16343146 - 16343210
Alignment:
Q  426 tttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    ||||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  16343146 tttttttattttgatcacatgtattatttttttgtaaattgcgacttttatgattatatagtatt 16343210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 20369354 - 20369268
Alignment:
Q  179 ggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 266  Q
    |||||||||||||  |  ||||||||||||| | | ||||||||||||||||||||| |||| || |||| ||||||||||| |||||    
T  20369354 ggtaaaaaagtgatacaatgttgtgaaaattaatttgagatgtatatgattcaattttagat-tgcatcaatataattgtttctcgat 20369268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 456
Target Start/End: Complemental strand, 1341622 - 1341547
Alignment:
Q  385 taacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattttt 456  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    |||| |||||||||| | ||||||||||||    
T  1341622 taacatatgaatgaaaataaaatatgttttatatgaaaactttacattttttattttgatcacgtgtattattttt 1341547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 36504873 - 36504935
Alignment:
Q  217 gatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||||| |||||||| ||||||| |||| || |||||||| ||||| ||||||||||||    
T  36504873 gatgtatatggttcaattttagatatgcatcactagaattgtttctcgatgaaccaattaaaa 36504935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 20179106 - 20179041
Alignment:
Q  214 ggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||||||||||||||||| ||||||| ||||||  |||||||| | ||| ||||| ||||||    
T  20179106 ggagatgtatatgattcaattttagatatgtatcagttgaattgtttcttgatgaaccacttaaaa 20179041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 40614831 - 40614935
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| |||||||||||||| |  | |||| |||||||| | |||||||||||| |||||||| ||||||  |||| || | |||||| ||||| |||||     
T  40614831 tgaaaggtaaaaaagtgagacaatattgtaaaaattcattagagatgtatatggttcaattttagatatacatcattagagttgtttctcgatgaaccac 40614930  T
Q  274 ttaaa 278  Q
    |||||    
T  40614931 ttaaa 40614935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 8913383 - 8913426
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatactta 100  Q
    ||||||||||||||||||||||| |||||||||||  |||||||    
T  8913383 aattaattattttaatttaaaatgtatattttatcggatactta 8913426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 36172081 - 36172019
Alignment:
Q  427 ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    |||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  36172081 ttttttattttgatcacatgtattattttt-tgtaaattgcgacttttatgattatatagtatt 36172019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 39615268 - 39615162
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    |||||| |||||||||||||||||||  | || | |||||||  ||||||| ||||||  || ||||||||| |   ||||||||||||||||||||| |    
T  39615268 agtatttgaattaattattttaattttta-taaacattttatggaatacttgtaagatactccacagatacacaatgatacttataagatacttcacaaa 39615170  T
Q  149 gacgtatc 156  Q
     |||||||    
T  39615169 tacgtatc 39615162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 27768115 - 27768145
Alignment:
Q  60 taattattttaatttaaaatatatattttat 90  Q
    |||||||||||||||||||||||||||||||    
T  27768115 taattattttaatttaaaatatatattttat 27768145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 35296463 - 35296524
Alignment:
Q  205 aaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgat 266  Q
    ||||||| | ||||| |||| |||||||||| ||||||| || ||||||||||||| |||||    
T  35296463 aaattcagtagagatatatacgattcaattttagatatgcataagtataattgtttctcgat 35296524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 35433483 - 35433547
Alignment:
Q  425 ttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    |||||| |||||||||| |||||||||||||| |||||||   || |||||| |||||||||||||    
T  35433483 ttttttttattttgatcacatgtattattttt-tgtaaatcgcgatttttatgattatatagtatt 35433547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 8e-85; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 174 - 490
Target Start/End: Original strand, 37231785 - 37232104
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||| | ||||||||||||||||    
T  37231785 tgaagggtaaaaaagtgagattgtgttgtgaaaattcaatggagatgtatacgattcaatttaagatatgaatcacagtaaatatttttcgattaaccaa 37231884  T
Q  274 ttaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatt 373  Q
    |||||||||||||||||||| |||||||| || |||||| |||| ||| ||| |||||| | |||||||||||||| |||||||||||||||||||||||    
T  37231885 ttaaaaattatgtttttggttgatgaaagtaacgagagaaaggaaattaaattaatcaacattaaacaaactttgttttgagttcttttattgatgcatt 37231984  T
Q  374 tgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatga 469  Q
    ||||||||   |||||||| ||||||||||||||||||||||||  |||| ||    |||| || ||||||| ||| |||||||||| |||||||  |||    
T  37231985 tgttgatatcctaacatataaatgaaaatagaatatgatttatacgaaaaatttacattttttactttgatcacatatattattttt-tgtaaattgtga 37232083  T
Q  470 cttttataattatatagtatt 490  Q
    |||||||  ||||||||||||    
T  37232084 cttttatgcttatatagtatt 37232104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 57 - 456
Target Start/End: Complemental strand, 9136950 - 9136558
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    |||||||||||||||||||||||| |||||||||    || |||||||||  |||||| ||| | | | |||||||||| |||||||||| |||||||||    
T  9136950 aattaattattttaatttaaaataaatattttattgg-tatttataagatattcgacatatatacatagatacttataacatacttcacagagacgtatc 9136852  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataatt 256  Q
    |||||| ||        |||| ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||| ||| |||||| |||||||    
T  9136851 ctggaaaaa-------atgaagggtaaaaaagtgagattgtgttgtgaaaattcaatggagacatatatgattcaatttaaaataagaatcactataatt 9136759  T
Q  257 gtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagt 356  Q
    ||||||||||||||||||| |||||||||  ||| ||||||||||| || |||||| | |||||||||| ||| || | |||| ||| ||| | |||| |    
T  9136758 gtttttcgattaaccaatt-aaaattatg--tttagtggatgaaagtaacgagagagatgagattcaataaattaacaataaataaattttattttgaat 9136662  T
Q  357 tcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattat 452  Q
    ||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  |||| ||    |||| |||||||||| |||||||| |    
T  9136661 tctcttattgatgcatttgttgatatcataacatatgaatgaaaatagaatatgatttatacgaaaattttacattttttattttgatcacatgtatttt 9136562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 51 - 497
Target Start/End: Original strand, 14179948 - 14180402
Alignment:
Q  51 tattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacataga 150  Q
    |||||||| ||||||||||||||| ||||||||  ||||||  |||||||||||||  |||||| ||| |      |||||||||||||||||||| |||    
T  14179948 tattggaaataattattttaatttcaaatatat--tttatcggatacttataagatactcgacatatata------tacttataagatacttcacagaga 14180039  T
Q  151 cgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagt 250  Q
    |||||| ||||| ||        |||| ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |    
T  14180040 cgtatcttggaaaaa------aatgaagggtaaaaaagtgagaatgtgttttgaaaattcaatggagatgtatatgattcaatttaagatatgtatcact 14180133  T
Q  251 ataattgtttttcgattaaccaattaaaaattatgtttttggtggatga----------------------aagcaaagagagataggagattcaatcaa 328  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||                      ||| || |||||| | || ||||||||||    
T  14180134 ataatt-tttttcgattaaccaattaaaaattatgtttttggtggatgaaagtaacgtttttggtggatgaaagtaacgagagagatgaaattcaatcaa 14180232  T
Q  329 tcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt-- 426  Q
    |||| | ||||||||||||||  ||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||  |||| ||      
T  14180233 tcaacattaaacaaactttgt--tgagttcttttattgatgcatttgttgatatcctaacttatgaatgaaaatagaatatgatttatacgaaaaattta 14180330  T
Q  427 --ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtattaaagggt 497  Q
      | || |||||||||| |||| ||||||||| |||||||  |||||||||| |||| |||||||| ||||||    
T  14180331 catattttattttgatcacatgcattattttt-tgtaaattgtgacttttatgattaaatagtattgaagggt 14180402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 231 - 427
Target Start/End: Complemental strand, 2813829 - 2813633
Alignment:
Q  231 aatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatc 330  Q
    ||||||||||| |||||| ||||||| ||||||||||||| ||||||| |||||  |||||||||||||||| || ||||||  ||||||| ||||||||    
T  2813829 aatttaagatacgaatcactataattatttttcgattaacaaattaaatattataattttggtggatgaaagtaacgagagaggggagatttaatcaatc 2813730  T
Q  331 aatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 427  Q
    || | |||||||||||||| ||||||||||||||||||  |||||||||||   ||||||||||||||||||||||||||||||||| |||||||||    
T  2813729 aacattaaacaaactttgttttgagttcttttattgatatatttgttgatatcctaacatatgaatgaaaatagaatatgatttatacaaaaacttt 2813633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 250 - 381
Target Start/End: Original strand, 11558763 - 11558894
Alignment:
Q  250 tataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgt 349  Q
    |||||||  |||||||||||| ||||||||| ||| ||||||||||||||||| ||  |||| || |||||||||| |||||| | |||||||| |||||    
T  11558763 tataattaattttcgattaactaattaaaaaatatatttttggtggatgaaagtaagaagagttatgagattcaattaatcaacattaaacaaattttgt 11558862  T
Q  350 attgagttcttttattgatgcatttgttgata 381  Q
     |||| ||||||||||| ||||||||||||||    
T  11558863 tttgatttcttttattgttgcatttgttgata 11558894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 180 - 363
Target Start/End: Complemental strand, 18928668 - 18928485
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||| |||| |  |||||| |||||| ||| ||||||||||||||||||||| ||||||| ||||||| |||||||| ||||| ||||| || |||    
T  18928668 gtaaaaaattgagacaatgttgtaaaaattgaattgagatgtatatgattcaattttagatatgcatcagtagaattgtttctcgatgaaccactt-aaa 18928570  T
Q  280 attatgtttttggt-ggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttctttta 363  Q
    ||||| ||||| || |||||||   || |||||| | | |||||| | |||||||| |||| ||| ||||| |||||||||||||    
T  18928569 attatattttttgtgggatgaagataacgagagagatgtgattcagttaatcaatattaaataaaatttgtgttgagttctttta 18928485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 35536834 - 35537012
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| | |  || ||| ||||| |||||||||| ||||||| |||||||| ||| |||    
T  35536834 aattaattattttaatttaaaatatatattttatagaatacttatacggtactcaacaaatacacacaaatacttttaagatatttcacatatacgcatc 35536933  T
Q  157 ctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatat 242  Q
    || ||| ||        ||||||||||||||||||| ||   || |||||| ||||||||| |||||| |||||||||| ||||||    
T  35536934 cttgaaaaa------aatgaatggtaaaaaagtgagactcaattatgaaaa-tcaatggaggtgtataagattcaatttgagatat 35537012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 2813971 - 2813888
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatactta 132  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||  ||||| |||||| |||||||||||    
T  2813971 agtattggaattaattattttaatttaaaatatatattttataggatacttataagatactcgacggatacacacaaatactta 2813888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 12006746 - 12006820
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaacc 271  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| |||| || |||||||||| ||| ||||    
T  12006746 tgttgtgaaaattcagtggagatgtatatgattcaattttagatatgcatcactagaattgttttttgatgaacc 12006820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 427
Target Start/End: Complemental strand, 31431359 - 31431248
Alignment:
Q  316 gagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgattta 415  Q
    |||||||||  |||||| | || ||||| ||||| ||||||||||||| |||||  | ||| ||||   ||||||||||||||||||| |||||||||||    
T  31431359 gagattcaaataatcaagattagacaaaatttgtgttgagttcttttaatgatgtttctgtggatatcttaacatatgaatgaaaatataatatgattta 31431260  T
Q  416 tataaaaacttt 427  Q
    ||| ||||||||    
T  31431259 tatgaaaacttt 31431248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 11558585 - 11558647
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatac 119  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||||  |||||||||||    
T  11558585 aattaattatttaaatttaaaatatatatcttatcgaatacttataagatattcgacagatac 11558647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 25429920 - 25430137
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    |||||||||||||||||||  || | |||| |||    ||||||||| ||| ||| ||||||||| |   |||||||||||||||||| |||| | ||||    
T  25429920 gaattaattattttaatttttaaaaaatatattaatggatacttatatgataatccacagatacacaaggatacttataagatacttcgcatatatgtat 25430019  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataat 255  Q
    ||| ||| |||       |||| |||||||||||||| |  |||||| ||||||||    |||| ||||||||||||||| ||||||| || |||| |||    
T  25430020 cctagaaaaaga------tgaagggtaaaaaagtgagacaatgttgtaaaaattcatgacagatatatatgattcaattttagatatgcattagtagaat 25430113  T
Q  256 tgtttttcgattaaccaattaaaa 279  Q
    |||||  |||| ||||| ||||||    
T  25430114 tgtttcacgatgaaccacttaaaa 25430137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 6166450 - 6166549
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||| |  |||||| |||||||| |  | |||||||||||||||||| ||||||| ||||||||||||| || ||||| || || ||||||    
T  6166450 gtaaaaaagtgagacaatgttgtaaaaattcattataaatgtatatgattcaattttagatatgcatcagtataattgattctcgatgaaacacttaaaa 6166549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 279
Target Start/End: Original strand, 32855987 - 32856133
Alignment:
Q  126 atacttataagatacttcacatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatat 225  Q
    ||||||||||||||||||||| | ||||||||| ||| |||       ||||  ||||||||| ||| |  |||||| || ||||| | |||||||||||    
T  32855987 atacttataagatacttcacagatacgtatcctagaaaaaga------tgaagagtaaaaaagcgagacaatgttgtaaacattcagtagagatgtatat 32856080  T
Q  226 gattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||||| ||||||| |||| || |||||||| ||||| ||||| ||||||    
T  32856081 gattcaattttagatatg-atcactagaattgtttctcgatgaaccacttaaaa 32856133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 359 - 490
Target Start/End: Complemental strand, 39297637 - 39297500
Alignment:
Q  359 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattattt 454  Q
    |||||||||| ||||||||||||   ||| |||| |||||||||| ||||| || | || ||||||||    |||| ||||||||||  |||||||||||    
T  39297637 ttttattgatacatttgttgatatcctaatatataaatgaaaataaaatataatgtttacaaaaactttaaattttttattttgatcatatgtattattt 39297538  T
Q  455 tt--ctgtaaatgatgacttttataattatatagtatt 490  Q
    ||   |||||||  |||||||||| |||||||||||||    
T  39297537 tttgttgtaaattgtgacttttatgattatatagtatt 39297500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 39297724 - 39297643
Alignment:
Q  251 ataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 332  Q
    |||||| ||||||||| | ||||||||||||||||||| | |||||||||   || |||||| |  ||||||||||||||||    
T  39297724 ataattatttttcgatgagccaattaaaaattatgtttattgtggatgaagataatgagagagacaagattcaatcaatcaa 39297643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 22470724 - 22470822
Alignment:
Q  359 ttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt---tttatattttgatcgcatgtattattt 454  Q
    ||||| |||||  ||||||||||   |||||||  |||||| |||||||||||||||||  ||||||||   ||| |||||||||| ||||||||||||    
T  22470724 ttttaatgatgtttttgttgatatcctaacatagaaatgaatatagaatatgatttatacgaaaactttatatttttattttgatcacatgtattattt 22470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 13003382 - 13003474
Alignment:
Q  183 aaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaa 277  Q
    |||||||||| |  ||||||  |||||||||  |||||||||||||||||||| ||||||| || | || |||||||| ||||| || |||||||    
T  13003382 aaaaagtgagacaatgttgtagaaattcaat--agatgtatatgattcaattttagatatgcataactagaattgtttctcgatgaatcaattaa 13003474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 43100915 - 43101006
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||||||||||||||| |||| || |||||| ||  |||||||||||||  || ||| ||||| ||||||| | | |||||| ||||||||    
T  43100915 aattaattattttaattgaaaaaatttattttgtctgatacttataagatgttccacatatacacacaaatattcaaaagataattcacata 43101006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 18320728 - 18320805
Alignment:
Q  182 aaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgttt 260  Q
    ||||||||||| |  |||||||||| || | ||||||||||||||||||||||| ||||||| || |||| || |||||    
T  18320728 aaaaaagtgagacaatgttgtgaaattt-agtggagatgtatatgattcaattttagatatgcataagtagaaatgttt 18320805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 23877482 - 23877400
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||| || ||||| | ||||| ||||||||||||||| ||||||| || | || ||||||||| |||| ||||| ||||||    
T  23877482 tgttgtaaacattcagtagagatatatatgattcaattttagatatgcatgactagaattgttttccgatgaaccacttaaaa 23877400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 17748970 - 17748925
Alignment:
Q  215 gagatgtatatgattcaatttaagatatgaatcagtataattgttt 260  Q
    |||||||||||||||||||||| |||||| |||| || ||||||||    
T  17748970 gagatgtatatgattcaatttatgatatgcatcactagaattgttt 17748925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 32579149 - 32579186
Alignment:
Q  386 aacatatgaatgaaaatagaatatgatttatataaaaa 423  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  32579149 aacatatgaaagaaaatagaatatgatttataaaaaaa 32579186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 1e-71; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 185 - 490
Target Start/End: Original strand, 7732241 - 7732545
Alignment:
Q  185 aaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaattat 284  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  7732241 aaagtgaggatgtgttgtgaaaattcaacggatatgtatatgattcaatttaagatatgaatcactataactgtttttcgattagccaattaaaaattat 7732340  T
Q  285 gtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatacta 384  Q
    |||||||||||||||||| |   ||||| |||||||| |||||||||| |  |||||||||| || || ||||||||||||||||||||| |||||| |     
T  7732341 gtttttggtggatgaaagta---agagagaggagatttaatcaatcaacatgaaacaaacttcgttttaagttcttttattgatgcatttattgatattc 7732437  T
Q  385 taacatatgaatgaaaatagaatatgatttatataaaa-----acttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataat 479  Q
    ||||||||||||||||||| |  |||||||||| ||||     || ||||| |||||||| | ||  |||||||||| | |||||  |||||||||| ||    
T  7732438 taacatatgaatgaaaatata--atgatttatacaaaaaatttacatttttttattttgaccacacatattattttt-tataaattgtgacttttatgat 7732534  T
Q  480 tatatagtatt 490  Q
    |||||||||||    
T  7732535 tatatagtatt 7732545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 56 - 312
Target Start/End: Original strand, 42990580 - 42990830
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtat 155  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||  |||||||||||| ||| ||||||||||||||||| ||| ||||||||    
T  42990580 gaattaattattttaatttaaaatatatattttattggatacttataagatactcgacagatacacacagatacttataagatactttacagagacgtat 42990679  T
Q  156 cctggaagaagnnnnnnntgaatggtaaaaaag-tgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataa 254  Q
    ||||||  ||        ||||  ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42990680 cctggacaaa------aatgaagtgtaaaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcactataa 42990773  T
Q  255 ttgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagaga 312  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||||| || ||||||    
T  42990774 ttgttgttcga-taactaattaaaaattatgtttttggtggatgaaagtaacgagaga 42990830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 48 - 349
Target Start/End: Original strand, 12118204 - 12118496
Alignment:
Q  48 gagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacat 147  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||| ||||| |||  |||||| ||||| ||| ||| |||||| |||||| |||     
T  12118204 gagtatcggaattaattattttaatttaaaaaatatattttatcgaatatttatacgatactcgacaaatacacacatatatttataatatactttacag 12118303  T
Q  148 agacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatc 247  Q
    | ||||||||||||| ||        |||| |||||||||||||   |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  12118304 atacgtatcctggaaaaa-------atgaagggtaaaaaagtgaa--tgtgttgtgaaaattcaatgaaaatgtatatgattcaatttaagatatgaatc 12118394  T
Q  248 agtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaacttt 347  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| | || || | |||  ||||||| |||| ||||| |||||||| |||    
T  12118395 agtataactgtttttcgattaactaattaaaaattatatttttggtggatgaaggtaatgaaaaatataagattcagtcaaccaatattaaacaaaattt 12118494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 174 - 396
Target Start/End: Original strand, 41634401 - 41634610
Alignment:
Q  174 tgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaa 273  Q
    |||| |||||||| |||||  ||||||||||||||||||||||||||||||| |||||||||||||||||              ||| ||||||||  ||    
T  41634401 tgaagggtaaaaaggtgagattgtgttgtgaaaattcaatggagatgtatatcattcaatttaagatatg--------------tttatcgattaattaa 41634486  T
Q  274 ttaaaaattatgtttttg-gtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcat 372  Q
    ||||||| ||| |||||| ||||||||| | || |||||| |||| |||||||||||||| | |||||||||||| | || |||||||||||||||||||    
T  41634487 ttaaaaactatttttttgtgtggatgaaggtaacgagagagaggacattcaatcaatcaacattaaacaaactttatttttagttcttttattgatgcat 41634586  T
Q  373 ttgttgatactataacatatgaat 396  Q
    ||||||||| | ||||||||||||    
T  41634587 ttgttgatattctaacatatgaat 41634610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 184 - 426
Target Start/End: Complemental strand, 12848545 - 12848318
Alignment:
Q  184 aaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatta 283  Q
    ||||||||| || ||||||||||||||||||||||||||||| |||||||             || |||||||||||||||||||| ||||| |||||||    
T  12848545 aaaagtgagtctttgttgtgaaaattcaatggagatgtatataattcaat-------------caatataattgtttttcgattaatcaatttaaaatta 12848459  T
Q  284 tgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgata 381  Q
    |||||||| |||||||  | ||  |||||||||    ||||||||||| || | |||||||||||||| |||||||| |||||||||| ||||||||||     
T  12848458 tgtttttgttggatgagggtaacgagagagata----attcaatcaattaacattaaacaaactttgttttgagttcctttattgatgtatttgttgatg 12848363  T
Q  382 ctataacatatgaatgaaaatagaatatgatttatataaaaactt 426  Q
       ||| |||||||| |||||||||||| |||||||  |||||||    
T  12848362 tcctaatatatgaataaaaatagaatataatttatacgaaaactt 12848318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 183 - 332
Target Start/End: Original strand, 27972008 - 27972159
Alignment:
Q  183 aaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaaatt 282  Q
    ||||||||||  ||| ||||||||||| |||  ||||||||| |||||||||||||||||||||| ||| |||| ||||| || ||||||||| |||| |    
T  27972008 aaaaagtgagtttgtattgtgaaaatttaataaagatgtataagattcaatttaagatatgaatcggtaaaattattttttgactaaccaattcaaaact 27972107  T
Q  283 atgtttttggtggatgaaagcaa--agagagataggagattcaatcaatcaa 332  Q
    ||||||||||||||| || | ||  ||||||| |||||||||||||||||||    
T  27972108 atgtttttggtggataaaggtaacgagagagaaaggagattcaatcaatcaa 27972159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 39329411 - 39329588
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| ||||||||||||||||||||| |||||||||||||||  ||| |||||||||  |||||| ||||| ||| |||||||||||||||||||||||    
T  39329411 agtatcggaattaattattttaatttataatatatattttatcggatatttataagatactcgacaaatacacacatatacttataagatacttcacata 39329510  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaa 232  Q
     |  ||  || ||| ||        |||| ||||||||||||||  ||||| ||||||||| |||||||||||||| |||||||    
T  39329511 tatatacactcgaaaaa------aatgaagggtaaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 39329588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 44 - 332
Target Start/End: Complemental strand, 16756312 - 16756032
Alignment:
Q  44 catagagtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttc 143  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||| || ||| ||  |  ||| ||||| |   |||||||||||||| ||     
T  16756312 catagagtatcagaattaattattttaatttaaaatatatattttatcagatatttgtaacatacttcacaaatacataatgatacttataagatatttt 16756213  T
Q  144 acatagacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatg 243  Q
    || || | ||||||| ||| |         |||| |  ||||||||||| |  ||||| |||| ||||| |||||||||||||||||||||| |||||||    
T  16756212 acgtatatgtatcctagaaaa-------tatgaaggacaaaaaagtgagacaatgttgcgaaagttcaacggagatgtatatgattcaattttagatatg 16756120  T
Q  244 aatcagtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaa 332  Q
     || |||| |||||||| |||||| |||| || ||||||||  || | ||||||||| | ||  ||||| | |||||||||| ||||||    
T  16756119 cattagtaaaattgtttatcgattgaccactt-aaaattataattcttgtggatgaaggtaacaagagagaagagattcaattaatcaa 16756032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 180 - 363
Target Start/End: Complemental strand, 2628069 - 2627883
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||| | ||||||| || ||||| | ||||||||||||||||||||| ||||||| || | || |||||||| ||||| ||||| || |||    
T  2628069 gtaaaaaagtgagacagtgttgtaaacattcagtagagatgtatatgattcaattttagatatgcataattagaattgtttatcgatgaaccactt-aaa 2627971  T
Q  280 attatgtttttggtggatgaaagcaaagagagat----aggagattcaatcaatcaatagtaaacaaactttgtattgagttctttta 363  Q
    |||||  |||  ||||||||| | ||||||||||    ||| |||||||| |||||| | |||| ||| ||||| ||||||| |||||    
T  2627970 attatactttctgtggatgaaggtaaagagagatagagaggtgattcaattaatcaacattaaataaaatttgtgttgagttatttta 2627883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 5836542 - 5836624
Alignment:
Q  197 tgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||||| || |||||||||||||||||||| | ||||| ||| |||||||||||| ||||| ||||| ||||||    
T  5836542 tgttgtgaaaattcagtgaagatgtatatgattcaattttatatatgtatcggtataattgtttctcgatgaaccacttaaaa 5836624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 29231309 - 29231085
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||  ||||||||  |||  || ||| ||||| |   ||| || |||||||||||||| |    
T  29231309 agtatcggaattaattattttaatttttaataaatattttatcggatacttatgtgatactccacatatacacaaggatatttttaagatacttcacaga 29231210  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 248  Q
     ||||||||| ||| |||       ||||   |||||||||||| |  |||||| |||||||| |  |||||||||||| ||||||| ||||||| ||||    
T  29231209 cacgtatcctagaaaaaga------tgaagactaaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgactcaattttagatatgcatca 29231116  T
Q  249 gtataattgtttttcgattaaccaattaaaa 279  Q
     || |||||||| ||||| || || ||||||    
T  29231115 atagaattgtttctcgatgaaacacttaaaa 29231085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 363
Target Start/End: Original strand, 26564971 - 26565153
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    |||||||||||||    |||||| || ||||||| |  |||||||||||||||||| ||||||| |||| ||||||||||| | ||| ||||| || |||    
T  26564971 gtaaaaaagtgagataatgttgtaaacattcaatagcaatgtatatgattcaattttagatatgtatcactataattgtttcttgataaaccactt-aaa 26565069  T
Q  280 attatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttgtattgagttctttta 363  Q
    |||||  || | ||||||||| | || |||||  ||| |||||| | |||||||| || | ||| ||| | |||||||||||||    
T  26565070 attatacttatcgtggatgaaggtaaggagagggaggtgattcagttaatcaatattagataaaatttatgttgagttctttta 26565153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 414
Target Start/End: Original strand, 39329596 - 39329670
Alignment:
Q  340 caaactttgtattgagttcttttattgatgcatttgttgata-ctataacatatgaatgaaaatagaatatgattt 414  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  39329596 caaactttgttttgaattcttttatcgatgcatttgttgatatcta-aatatatgaatgaaaatagaatataattt 39329670  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 417
Target Start/End: Complemental strand, 8802777 - 8802687
Alignment:
Q  327 aatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttata 417  Q
    |||||||| |||||||| ||||| ||||||||||||  |||||| | | ||||||   |||||||||||| |||||| |||||||||||||    
T  8802777 aatcaatattaaacaaaatttgtgttgagttcttttgatgatgcttctattgatatcctaacatatgaataaaaatataatatgatttata 8802687  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 26016672 - 26016613
Alignment:
Q  199 ttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgt 258  Q
    |||||| |||||||| ||||||||||||||||| |||| ||||||||| |||| ||||||    
T  26016672 ttgtgagaattcaatagagatgtatatgattcagtttaggatatgaattagtagaattgt 26016613  T

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Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 41634663 - 41634766
Alignment:
Q  386 aacatatgaatgaaaatagaatatgatttatataaaaactt----ttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataatta 481  Q
    ||||||||||||||||||||||||||||||||  ||||| |    |||| | |||||||| |||||||| || || | ||||| ||||||||||| ||||    
T  41634663 aacatatgaatgaaaatagaatatgatttatacgaaaacattacattttttgttttgatcacatgtatt-ttcttttttaaattatgacttttatgatta 41634761  T
Q  482 tatag 486  Q
    |||||    
T  41634762 tatag 41634766  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 13407326 - 13407268
Alignment:
Q  221 tatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||||| ||||||  |||||||||||||||| ||||| ||||| ||||||    
T  13407326 tatatgattcaattttagatatacatcagtataattgtttctcgatgaaccagttaaaa 13407268  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 36906776 - 36906852
Alignment:
Q  351 ttgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 427  Q
    ||||||||||||| | |||  ||||||||||   ||||| ||||||||||||| |||||| ||||||| ||||||||    
T  36906776 ttgagttcttttaataatgtttttgttgatatcctaacaaatgaatgaaaatataatatgctttatatgaaaacttt 36906852  T

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Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 39700923 - 39700891
Alignment:
Q  385 taacatatgaatgaaaatagaatatgatttata 417  Q
    |||||||||||||||||||||||||||||||||    
T  39700923 taacatatgaatgaaaatagaatatgatttata 39700891  T

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Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 7612609 - 7612676
Alignment:
Q  202 tgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaa 269  Q
    |||||||| | | ||||| |||||||||||||||||||||  ||||| ||||||||||| | ||||||    
T  7612609 tgaaaatttagtagagatttatatgattcaatttaagatagaaatcattataattgtttcttgattaa 7612676  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 34764814 - 34764724
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcaca 146  Q
    ||||||||||||| ||||| ||| | |||||||||| |||||||||| |||  || ||| ||||| |   ||||||||||| |||||||||    
T  34764814 gaattaattatttaaattttaaaaaaatattttatcgaatacttatatgatactccacaaatacacaaggatacttataaggtacttcaca 34764724  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 3387180 - 3387281
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacatagacgtatc 156  Q
    ||||||||||||||||||   | | ||| |||||||||||| ||||||||  |  || |||||| | ||||||||||||||| |||| || | |||||||    
T  3387180 aattaattattttaatttttgaaaaataatttatcaaatacatataagatacttcacggatacacaaaaatacttataagatgcttcgcaaatacgtatc 3387279  T
Q  157 ct 158  Q
    ||    
T  3387280 ct 3387281  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 411
Target Start/End: Original strand, 5836653 - 5836750
Alignment:
Q  314 aggagattcaatcaatcaatagtaaacaaactttgtattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatga 411  Q
    |||||||||||| |||||  | || | ||| ||||| ||||||||||||| |||||| | ||||||||   |||||| ||||||||| || |||||||    
T  5836653 aggagattcaattaatcaccattagataaaatttgtgttgagttcttttaatgatgcttatgttgatatcctaacatctgaatgaaagtacaatatga 5836750  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 7732127 - 7732176
Alignment:
Q  57 aattaattattttaatttaaaatatatattttatcaaatacttataagat 106  Q
    ||||||||| ||| |||||||||||||||||||||  ||| |||||||||    
T  7732127 aattaattactttgatttaaaatatatattttatcggatatttataagat 7732176  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 31114070 - 31114025
Alignment:
Q  215 gagatgtatatgattcaatttaagatatgaatcagtataattgttt 260  Q
    ||||||||||||||||||||| ||||||| || |||| ||||||||    
T  31114070 gagatgtatatgattcaattttagatatgcattagtaaaattgttt 31114025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 49 - 427
Target Start/End: Original strand, 394061 - 394425
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    |||||| ||||||||||||||||||||||| |||||||||||   ||||| |||||||  |||||| || || ||| |||||||||||||| |||||| |    
T  394061 agtattagaattaattattttaatttaaaaaatatattttattggatactgataagatactcgacaaatgcacacatatacttataagatatttcacaaa 394160  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 248  Q
    ||||||| ||| |||||        |||| |||||||  | | |  ||||||||||||||           ||||||||||| |||||||||||||||||    
T  394161 gacgtattctg-aagaa--aaaaaatgaagggtaaaattgcgggtttgtgttgtgaaaat-----------gtatatgattcgatttaagatatgaatca 394246  T
Q  249 gtataattgtttttcgattaaccaattaaaaattatgtttttggtggatgaaagcaaagagagataggagattcaatcaatcaatagtaaacaaactttg 348  Q
     ||||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||  ||| | ||||||||||||||||||| | |||||||| ||||    
T  394247 ctataattttttttcgattaaccaattaaaaatcatgtttttagtggatgaaagtaacaagaaagaggagattcaatcaatcaacattaaacaaattttg 394346  T
Q  349 tattgagttcttttattgatgcatttgttgatactataacatatgaatgaaaatagaatatgatttatataaaaacttt 427  Q
    | |||||||||| ||||||| ||||||||||||| |||||||| |||| |||||| |||| ||||||||  ||||||||    
T  394347 ttttgagttcttgtattgatccatttgttgataccataacataagaattaaaatataatacgatttatacgaaaacttt 394425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 7794 - 8005
Alignment:
Q  49 agtattggaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagatacaaacaaatacttataagatacttcacata 148  Q
    ||||| ||||||||||||||||||||  |||| |||||||||| |||||||||  |||  || ||||||||| |   |||||| |||||||||||||| |    
T  7794 agtatcggaattaattattttaatttttaataaatattttatcgaatacttatgtgatactccacagatacacaaggatacttctaagatacttcacaga 7893  T
Q  149 gacgtatcctggaagaagnnnnnnntgaatggtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatca 248  Q
     ||||||||| ||| |||       ||||  ||||||||||||| |  |||||| |||||||| |  |||||||||||| ||||||| ||||||| ||||    
T  7894 cacgtatcctagaaaaag------atgaagagtaaaaaagtgagacaatgttgtaaaaattcattatagatgtatatgactcaattttagatatgcatca 7987  T
Q  249 gtataattgtttttcgat 266  Q
     || |||||||| |||||    
T  7988 atagaattgtttctcgat 8005  T

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Target: scaffold0051 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 53708 - 53770
Alignment:
Q  56 gaattaattattttaatttaaaatatatattttatcaaatacttataagatcatcgacagata 118  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  53708 gaattaattcctttaatttaaaatatatattttatcggatacttataagataatcgacagata 53770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 53789 - 53854
Alignment:
Q  425 ttttttatattttgatcgcatgtattatttttctgtaaatgatgacttttataattatatagtatt 490  Q
    |||||| |||||||||| |||||||||||||| |||||||   ||||||||| |||||||||||||    
T  53789 ttttttttattttgatcacatgtattatttttttgtaaattgcgacttttatgattatatagtatt 53854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 6176 - 6275
Alignment:
Q  180 gtaaaaaagtgaggctgtgttgtgaaaattcaatggagatgtatatgattcaatttaagatatgaatcagtataattgtttttcgattaaccaattaaaa 279  Q
    ||||||||||||| |  |||||  || |||| || ||||||||||||||||||||  ||||||| || | || |||||||||| ||| ||||| ||||||    
T  6176 gtaaaaaagtgagacaatgttgcaaacattcgatagagatgtatatgattcaattatagatatgcataactagaattgttttttgatgaaccacttaaaa 6275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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