View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_20 (Length: 320)
Name: NF8249_low_20
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 521438 - 521162
Alignment:
| Q |
18 |
tttacaatcatgacatgctcaatcatgggaaggtcttgttcagagcaggtatagaatcgactgctgaaaagtgatgaatttacacaaatttcagagatcc |
117 |
Q |
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| T |
521438 |
tttacaatcatgacatgctcaatcatgggaaggtcttgttcagagcaggtatagaatcgactgctgaaaagtgatgaatttacacaaatttcagagatcc |
521339 |
T |
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| Q |
118 |
atctcgcgctttgtgccaacaacaaagagataagcccaagcagcatcagctctatcaacaaggatcagttcaagttaattaaatataaataat--nnnnn |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
521338 |
atctcgcgctttgtgccaacaacaaagagataagcccaagcagcatcagctctatcaacaaggatcagttcaagttaattaaatatatataataaaaaaa |
521239 |
T |
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| Q |
216 |
nnnncaatgaagttgccaaagattctgatagaaaactgaattaaggtaagcatattattattgaatgttgacactgg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
521238 |
aaaacaatgaagttgccaaagattctgatagaaaactgaaataaggtaagcatattattattgaatgttcacactgg |
521162 |
T |
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