View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_21 (Length: 317)
Name: NF8249_low_21
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 6332873 - 6332731
Alignment:
| Q |
1 |
ggatttttaataataaaagttatttgttaaagttaaaatttaaaaatgccgttgaatccttataaaatatatgacattcgtcattttgacttgttcaaaa |
100 |
Q |
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| T |
6332873 |
ggatttttaataataaaagttatttgttaaagttaaaatttaaaaatgccgttgaatccttttaaaatatacgacattcgccattttgagttgttcaaaa |
6332774 |
T |
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| Q |
101 |
aa---atatatgacattcgctaactctaattattggaaaaagt |
140 |
Q |
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| T |
6332773 |
aatatatatatgacattcgctaactctaattatcggaaaaagt |
6332731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 6332665 - 6332608
Alignment:
| Q |
242 |
aaaactagagcaatgttatttactctccaacnnnnnnngagagatatcatcacttttt |
299 |
Q |
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| T |
6332665 |
aaaactagagcaatgttatttactctccaacaaaaaaagagagatatcatcacttttt |
6332608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 6332712 - 6332676
Alignment:
| Q |
153 |
tatattaaaatgggatatatttttgtcttttgaagga |
189 |
Q |
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| T |
6332712 |
tatattaaaatgggatatatttttgtcttttgaagga |
6332676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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