View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_22 (Length: 296)
Name: NF8249_low_22
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 65 - 283
Target Start/End: Original strand, 30957116 - 30957335
Alignment:
| Q |
65 |
cgtcccaaccaaaagtagtaagtcatttt-ttcacgctatttcaaaatatctaatttatcttatataaaatatttcatcacctctcaataacatttattt |
163 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
30957116 |
cgtcccaaccaaaagtagtaagtcttttttttcacgctatttcaaaatatctaatttatcttatataaaatatttcatcaccactcattaacatttattt |
30957215 |
T |
|
| Q |
164 |
tattttccttagacaataggcgtttgggattggttccatgcagatcacgcgctgattgttcgaaagatatgtgcaaacttcctaaatttgtgtggtgtta |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
30957216 |
tattttccttagacaataggcgtttgggattggttccatgcagatcacgcgctgattgttcgaaagatatgtgtaagcctcctaaatttgtgtggtgtta |
30957315 |
T |
|
| Q |
264 |
tgatgcttatcgtgtgtgcg |
283 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
30957316 |
tgatgcttattgtgtgtgcg |
30957335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 30955628 - 30955809
Alignment:
| Q |
67 |
tcccaaccaaaagtagtaagtcattttttcacgctatttcaaaatatctaatttatcttatataaaatatttcatcacctctcaataacatttattttat |
166 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||| |||||||| | ||||||| ||||||||| |
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| T |
30955628 |
tcccaactaaaagtagtaagtcatttt-tcacgctattttcaaatatctaatttctcttatataagatattccatcaccttttaataacaattattttat |
30955726 |
T |
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| Q |
167 |
tttccttagacaataggcgtttgggattggttccatgcagatcacgcgctgattgttcgaaagatatgtgcaaacttcctaaa |
249 |
Q |
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| T |
30955727 |
ttttcttagccattagagctttgagaatggctccatgcaaagctcgcgctgattgttcgaaacttatgtgtgaacttcctaaa |
30955809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 30944995 - 30944894
Alignment:
| Q |
66 |
gtcccaaccaaaagtagtaagtcattttttcacgctatttcaaaatatctaatttatcttatataaaatatttcatcacctctcaataacatttatttta |
165 |
Q |
| |
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|||||||||||||||||||||| ||||| || |||||| ||||||||||||| |||| |||||||||||||||||||| | |||||||||| ||||| |
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| T |
30944995 |
gtcccaaccaaaagtagtaagtaattttca-acactattttcaaatatctaatttctcttttataaaatatttcatcaccttttaataacatttctttta |
30944897 |
T |
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| Q |
166 |
ttt |
168 |
Q |
| |
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||| |
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| T |
30944896 |
ttt |
30944894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 30950750 - 30950652
Alignment:
| Q |
70 |
caaccaaaagtagtaagtcattttttcacgctatttcaaaatatctaatttatcttatataaaatatttcatcacctctcaataacatttattttatttt |
169 |
Q |
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|
||||||||||| ||||||| |||| || |||||| ||||||||||||| ||||||||||||||||||||||||| | ||||| | || ||||||||| |
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| T |
30950750 |
caaccaaaagtggtaagtcgttttca-acactattttgaaatatctaatttctcttatataaaatatttcatcaccttttaataaaaattcttttatttt |
30950652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 30681631 - 30681741
Alignment:
| Q |
66 |
gtcccaaccaaaagtagtaagtcattttttcacgctatttcaaaatatctaatttatcttatataaaatatttcatcacctctcaataacatttatttta |
165 |
Q |
| |
|
|||| |||||||| | |||||||||||| | ||||||| |||||||||||||||| ||||| |||||||| |||||| | | ||| | |||||||||| |
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| T |
30681631 |
gtcctaaccaaaattggtaagtcatttt--ccagctattttaaaatatctaatttatgttatacaaaatattccatcacattttaatcaaatttatttta |
30681728 |
T |
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| Q |
166 |
ttttccttagaca |
178 |
Q |
| |
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|||| ||||||| |
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|
| T |
30681729 |
tttttattagaca |
30681741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 30973651 - 30973699
Alignment:
| Q |
113 |
tctaatttatcttatataaaatatttcatcacctctcaataacatttat |
161 |
Q |
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||||||||||||||||||||||||||||||| || | | |||||||||| |
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| T |
30973651 |
tctaatttatcttatataaaatatttcatcatcttttagtaacatttat |
30973699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 30981617 - 30981647
Alignment:
| Q |
113 |
tctaatttatcttatataaaatatttcatca |
143 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30981617 |
tctaatttatcttatataaaatatttcatca |
30981647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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