View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_24 (Length: 283)
Name: NF8249_low_24
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 49876607 - 49876844
Alignment:
| Q |
18 |
tcaaccatctcttcaatttccttcagaatcatccttcttcaatagctctcaatctctgcaaatattccgctcttttcctcgctctactcgccacctttcg |
117 |
Q |
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| T |
49876607 |
tcaaccatctcttcaatttccttcagaatcatccttcttcaatagctctcaatctctgcaaatattccgctcttttcctcgctctactcgccacctttca |
49876706 |
T |
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| Q |
118 |
caccattttcatcattaaattccccnnnnnnnctccttctcttcctcctctcattgctcaagatgatttcagcgacagtgaagatgaaacctgctcgttg |
217 |
Q |
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| T |
49876707 |
caccattttcatcatcaaattccccaaaaaaactccttctcttcctcctctcattgctgaagatgatttcggcgacagtgaagatgaaacctgctcgttg |
49876806 |
T |
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| Q |
218 |
tcgtccatgtcatcggaacccgaagacgatgaagaaga |
255 |
Q |
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|| |||||||||||||||||||||||| |||||||||| |
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| T |
49876807 |
tcatccatgtcatcggaacccgaagacaatgaagaaga |
49876844 |
T |
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