View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_27 (Length: 254)
Name: NF8249_low_27
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 45 - 253
Target Start/End: Original strand, 50593808 - 50594012
Alignment:
| Q |
45 |
cccttaacttttaaaaagttgtggttttgatcccttaataaaaaataatattttagttccacatgtaatcatttaccgatttcaactcaagaacattaaa |
144 |
Q |
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| T |
50593808 |
cccttaacttttaaaaagttgttgttctgatcccttaaaaaaaaaaaat----tagttccacatgtaatcatttaccgttttcaactcaagaacattaaa |
50593903 |
T |
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| Q |
145 |
cttctccatctctttcgtttcacatgtaatcgtcatttgcttcaatccaaaattaaatcatacttgtcttgagaaataaaatacccataatttatgaagg |
244 |
Q |
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| T |
50593904 |
cttctacctctctttcgtttcacatgtaatcgtcatcttcttcaatccaaaattaaatcatacttgtcttgagaaataaattacccataatttatgaagg |
50594003 |
T |
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| Q |
245 |
ggtagcgta |
253 |
Q |
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|||| |||| |
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| T |
50594004 |
ggtaacgta |
50594012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 25062500 - 25062606
Alignment:
| Q |
111 |
aatcatttaccgatttcaactcaagaacattaaacttctccatctctttcgtttcacatgtaatcgtcatttgcttcaatccaaaattaaatcatacttg |
210 |
Q |
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| T |
25062500 |
aatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatcatacttg |
25062599 |
T |
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| Q |
211 |
tcttgag |
217 |
Q |
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|| |||| |
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| T |
25062600 |
tcatgag |
25062606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 51362830 - 51362790
Alignment:
| Q |
49 |
taacttttaaaaagttgtggttttgatcccttaataaaaaa |
89 |
Q |
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| T |
51362830 |
taacttttacaaagttgtgattttgatcccttaagaaaaaa |
51362790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 26126926 - 26126974
Alignment:
| Q |
46 |
ccttaacttttaaaaagttgtggttttgatcccttaataaaaaataata |
94 |
Q |
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|||||||||||||||||||| | ||||| |||||||||||||| |||| |
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| T |
26126926 |
ccttaacttttaaaaagttgcgattttggccccttaataaaaaaaaata |
26126974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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