View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8249_low_4 (Length: 554)

Name: NF8249_low_4
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8249_low_4
NF8249_low_4
[»] chr1 (6 HSPs)
chr1 (161-387)||(32017575-32017804)
chr1 (33-94)||(32017865-32017926)
chr1 (322-389)||(38460681-38460748)
chr1 (323-361)||(32018155-32018193)
chr1 (322-387)||(38459410-38459475)
chr1 (315-388)||(26853088-26853162)
[»] chr5 (5 HSPs)
chr5 (451-536)||(37414498-37414583)
chr5 (388-431)||(37414386-37414429)
chr5 (322-374)||(12423282-12423334)
chr5 (336-387)||(4549253-4549304)
chr5 (315-388)||(43514466-43514540)
[»] chr2 (3 HSPs)
chr2 (273-387)||(11590148-11590262)
chr2 (326-389)||(11590780-11590844)
chr2 (299-387)||(44553819-44553907)
[»] chr6 (2 HSPs)
chr6 (273-387)||(19749510-19749624)
chr6 (326-374)||(19750141-19750190)
[»] chr3 (1 HSPs)
chr3 (322-389)||(30626470-30626537)
[»] chr8 (1 HSPs)
chr8 (336-389)||(3528786-3528839)
[»] chr7 (2 HSPs)
chr7 (322-390)||(2564735-2564803)
chr7 (322-372)||(11702277-11702327)
[»] chr4 (2 HSPs)
chr4 (315-388)||(44891722-44891796)
chr4 (319-360)||(37274171-37274212)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 161 - 387
Target Start/End: Complemental strand, 32017804 - 32017575
Alignment:
Q  161 ggtatgatgatgatgacagacagaccatcacaaccgtatatggtcactacaagatcctttggcaatggaaagaaggtctgggcagagaaaaatattgcta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32017804 ggtatgatgatgatgacagacagaccatcacaaccgtatatggtcactacaaggtcctttggcaatggaaagaaggtctgggcagagaaaaatattgcta 32017705  T
Q  261 gnnnnnnnnnnn---agcaaccagaacagcctgttaacaggttaaaggagtaataaaagtgggggatgtggcaaattcttattggagtgtgtcaaagaga 357  Q
    |              ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32017704 gttttttttttttttagcaaccagaacagcctgttaacaggttaaaggagcaataaaagtgggggatgtggcaaattcttattggagtgtgtcaaagaga 32017605  T
Q  358 gtgttagagagtgtgacactagcctttctc 387  Q
    ||||||||||||||||| ||||||||||||    
T  32017604 gtgttagagagtgtgacgctagcctttctc 32017575  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 32017926 - 32017865
Alignment:
Q  33 tggttccagattcagcgccacccatctttctttcatgaaactgagaagaggggtggttgtta 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32017926 tggttccagattcagcgccacccatctttctttcatgaaactgagaagaggggtggttgtta 32017865  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 38460681 - 38460748
Alignment:
Q  322 gatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtgacactagcctttctcat 389  Q
    |||||||| |||| |||||||||||||| |||||| ||||||| ||||||| | ||||| ||||||||    
T  38460681 gatgtggctaatttttattggagtgtgttaaagagtgtgttagggagtgtgtccctagcatttctcat 38460748  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 361
Target Start/End: Original strand, 32018155 - 32018193
Alignment:
Q  323 atgtggcaaattcttattggagtgtgtcaaagagagtgt 361  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  32018155 atgtggcaaattcatattggagtgtgtcaaagagagtgt 32018193  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 38459475 - 38459410
Alignment:
Q  322 gatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtgacactagcctttctc 387  Q
    |||||||| |||| |||||||||||||| |||||| ||||||| ||||||| | ||||| ||||||    
T  38459475 gatgtggctaatttttattggagtgtgttaaagagtgtgttagggagtgtgtccctagcatttctc 38459410  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 26853088 - 26853162
Alignment:
Q  315 agtgggggatgtggcaaattcttattggagtgtg-tcaaagagagtgttagagagtgtgacactagcctttctca 388  Q
    |||||| ||||||||||||| | ||||||||||| | |||||| ||||||| ||||||| | ||||| |||||||    
T  26853088 agtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctca 26853162  T

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Target: chr5 (Bit Score: 86; Significance: 7e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 451 - 536
Target Start/End: Original strand, 37414498 - 37414583
Alignment:
Q  451 aagtacataaatgatgttccttcttgtttccctgttgtaaggatcacgtgccaagcgtgtccttaatttacatccaacttacaaca 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37414498 aagtacataaatgatgttccttcttgtttccctgttgtaaggatcacgtgccaagcgtgtccttaatttacatccaacttacaaca 37414583  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 388 - 431
Target Start/End: Original strand, 37414386 - 37414429
Alignment:
Q  388 atcaaaataagatgaaaattgaaaacaaaagaagtttatgaata 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37414386 atcaaaataagatgaaaattgaaaacaaaagaagtttatgaata 37414429  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 12423282 - 12423334
Alignment:
Q  322 gatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtgac 374  Q
    |||||||| |||| |||||||||||||| |||||| ||||||| |||||||||    
T  12423282 gatgtggctaatttttattggagtgtgttaaagagtgtgttagggagtgtgac 12423334  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 4549253 - 4549304
Alignment:
Q  336 ttattggagtgtgtcaaagagagtgttagagagtgtgacactagcctttctc 387  Q
    ||||||||||||||||||||| ||||||| ||||||| | ||||| ||||||    
T  4549253 ttattggagtgtgtcaaagagtgtgttagggagtgtgtccctagcatttctc 4549304  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 43514466 - 43514540
Alignment:
Q  315 agtgggggatgtggcaaattcttattggagtgtg-tcaaagagagtgttagagagtgtgacactagcctttctca 388  Q
    |||||| ||||||||||||| | ||||||||||| | |||||| ||||||| ||||||| | ||||| |||||||    
T  43514466 agtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctca 43514540  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 273 - 387
Target Start/End: Complemental strand, 11590262 - 11590148
Alignment:
Q  273 agcaaccagaacagcctgttaacaggttaaaggagtaataaaagtgggggatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtg 372  Q
    |||||||| |||| ||||||| | |||||||||| |||||| |||||| ||||||||| | | ||| ||||||||||||||||| ||||||||| || ||    
T  11590262 agcaaccaaaacaacctgttagccggttaaaggaataataagagtgggtgatgtggcataatattactggagtgtgtcaaagagtgtgttagagggtttg 11590163  T
Q  373 acactagcctttctc 387  Q
    || ||||| ||||||    
T  11590162 accctagcatttctc 11590148  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 11590780 - 11590844
Alignment:
Q  326 tggcaaattcttattggagtgtgtcaaa-gagagtgttagagagtgtgacactagcctttctcat 389  Q
    ||||||||| | |||||||||||||||| ||| |||||||||||||||||  |||| ||||||||    
T  11590780 tggcaaattatgattggagtgtgtcaaaagagtgtgttagagagtgtgaccatagcatttctcat 11590844  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 44553819 - 44553907
Alignment:
Q  299 ttaaaggagtaataaaagtgggggatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtgacactagcctttctc 387  Q
    |||||||| |||||| |||||| ||||||||| | | ||| | ||||||||||||||| |||||||||  | |||| ||||| ||||||    
T  44553819 ttaaaggaataataagagtgggtgatgtggcataatattactagagtgtgtcaaagagtgtgttagaggatttgaccctagcatttctc 44553907  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 387
Target Start/End: Complemental strand, 19749624 - 19749510
Alignment:
Q  273 agcaaccagaacagcctgttaacaggttaaaggagtaataaaagtgggggatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtg 372  Q
    |||||||| |||| ||||||| | |||||||||| |||||| |||||| ||||||||| | | ||| ||||||||||||||||| ||||||||| || ||    
T  19749624 agcaaccaaaacaacctgttagccggttaaaggaataataagagtgggtgatgtggcataatattactggagtgtgtcaaagagtgtgttagagggtttg 19749525  T
Q  373 acactagcctttctc 387  Q
    ||  |||| ||||||    
T  19749524 accttagcatttctc 19749510  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 19750141 - 19750190
Alignment:
Q  326 tggcaaattcttattggagtgtgtc-aaagagagtgttagagagtgtgac 374  Q
    ||||||||| | ||||||||||||| |||||| |||||||||||||||||    
T  19750141 tggcaaattatgattggagtgtgtcaaaagagtgtgttagagagtgtgac 19750190  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 30626537 - 30626470
Alignment:
Q  322 gatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtgacactagcctttctcat 389  Q
    |||||||| |||| |||||||||||||| |||||| ||||||| ||||||||| ||||| ||||||||    
T  30626537 gatgtggctaatttttattggagtgtgttaaagagtgtgttagggagtgtgaccctagcatttctcat 30626470  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 3528786 - 3528839
Alignment:
Q  336 ttattggagtgtgtcaaagagagtgttagagagtgtgacactagcctttctcat 389  Q
    ||||||||||||||||||||| ||||||| ||||||| | ||||| ||||||||    
T  3528786 ttattggagtgtgtcaaagagtgtgttagggagtgtgtccctagcatttctcat 3528839  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 2564803 - 2564735
Alignment:
Q  322 gatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtgacactagcctttctcatc 390  Q
    |||||||| ||||  ||||||||||||| ||||||  |||||| ||||||||| ||||| |||||||||    
T  2564803 gatgtggctaatttctattggagtgtgttaaagagtatgttagggagtgtgaccctagcatttctcatc 2564735  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 11702327 - 11702277
Alignment:
Q  322 gatgtggcaaattcttattggagtgtgtcaaagagagtgttagagagtgtg 372  Q
    |||||||| |||| | ||||||||||||||||||| ||||||||| |||||    
T  11702327 gatgtggctaattttcattggagtgtgtcaaagagtgtgttagagggtgtg 11702277  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 44891796 - 44891722
Alignment:
Q  315 agtgggggatgtggcaaattcttattggagtgtg-tcaaagagagtgttagagagtgtgacactagcctttctca 388  Q
    |||||| ||||||||||||| | ||||||||||| | |||||| ||||||| ||||||| | ||||| |||||||    
T  44891796 agtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctca 44891722  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 37274171 - 37274212
Alignment:
Q  319 ggggatgtggcaaattcttattggagtgtgtcaaagagagtg 360  Q
    ||||||||| ||||||||||| |||||||| |||||||||||    
T  37274171 ggggatgtgacaaattcttatcggagtgtgccaaagagagtg 37274212  T

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