View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_5 (Length: 546)
Name: NF8249_low_5
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 537
Target Start/End: Complemental strand, 22062054 - 22061533
Alignment:
| Q |
20 |
aatctaccccatgtacctcaaacatgtgaaaaatacactaccatgaatgtgaatcgctgtgttatataagcctctcatggatgcttctttcaatgctttt |
119 |
Q |
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| T |
22062054 |
aatctaccccatgtacctcaatcatgtgaaaaatacactaccatgaatgttaatcgctgtgttatataagcctctcatggatgcttctttcaatgctttt |
22061955 |
T |
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| Q |
120 |
aattcttcaaattattacattattttggctccaccgaaattcagtttttcagttaggttcttttctgctgaatcctcaagtggcgatgacaataatgaag |
219 |
Q |
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| T |
22061954 |
aattcttcaaattattacattattttggctccaccgaaattcagtttttcagttaggttcttttctgctgaatcctcaagtggtgatgacaataatgaag |
22061855 |
T |
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| Q |
220 |
acgacagtgatgatgttcatgataagaatagtaatcagttacatctaagggatgatgattttgtcaaagatgttagcaccattttggatataatt----a |
315 |
Q |
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| T |
22061854 |
acgacagtgatgatgttcatgataagaatagtaatcagttacatctaagggatgatcattttgtcaaagatgttaacaccattttggatataattaacga |
22061755 |
T |
|
| Q |
316 |
atagggttcgccgacaatccaacaccgaaatccatcgccggcgagtgaacctttggtattatcgtcagaaacaattggccggatttaggtgttgaagcga |
415 |
Q |
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| T |
22061754 |
atagggttcgccgacaatccaacaccgaaatccatcgccggcgagtgaacctttggtattatcgtcagaaacaattggccggatttaggtgttggagcga |
22061655 |
T |
|
| Q |
416 |
agaaggaaggattatcggagtggaggagtaacaggagcatgaattggaggttttgctgataaactgatcagagatggagatcgctggtgaagattgtatt |
515 |
Q |
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| T |
22061654 |
agaaggaaggaatatcggagtggaggagtaacaggagcatgaattggaggttttgctgataaactgatcagagatggagatcgctggtgaagattgtatt |
22061555 |
T |
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| Q |
516 |
tctggggatgatgatgatgtcc |
537 |
Q |
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| T |
22061554 |
tccggggatgatgatgatgtcc |
22061533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 87 - 314
Target Start/End: Original strand, 32904110 - 32904337
Alignment:
| Q |
87 |
aagcctctcatggatgcttctttcaatgcttttaattcttcaaattattacattattttggctccaccgaaattcagtttttcagttaggttcttttctg |
186 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
32904110 |
aagcctcttatgaatgcttctttcaatgcttttaattcttcaaattattacacttttttcgctccaccgaaatttagtttttcagttaggttcttttctg |
32904209 |
T |
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| Q |
187 |
ctgaatcctcaagtggcgatgacaataatgaagacgacagtgatgatgttcatgataagaatagtaatcagttacatctaagggatgatgattttgtcaa |
286 |
Q |
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||||||||||||||| ||||||| |||||||||| ||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
32904210 |
ctgaatcctcaagtgacgatgactataatgaagatgacggtgatgatgatcatgataagaatagtagtcagttacatttaagggatgatggttttgtcaa |
32904309 |
T |
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| Q |
287 |
agatgttagcaccattttggatataatt |
314 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
32904310 |
agatgttaagaccattttggatataatt |
32904337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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