View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_6 (Length: 511)
Name: NF8249_low_6
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 9e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 170 - 422
Target Start/End: Original strand, 20301522 - 20301772
Alignment:
| Q |
170 |
gatgttggtgtttctgcctccatctttatttcttttgactgtttttcatacggtgtataacaatctctttggtactctatttgcaggatatgcctctcat |
269 |
Q |
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| T |
20301522 |
gatgttggtgtttctgcctccatctttatttcttttgactgtgtttcatacagtgtataacaatctctt-ggtactctctttgcaggatatgcctctcat |
20301620 |
T |
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| Q |
270 |
gtctcttgactatggtttccttgttatgtgagtttctcttttgtctttaataggtaagtttagattatttgattttcttacttatcagtgaagtaacatg |
369 |
Q |
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| T |
20301621 |
gtctcttgactatggtttccttgttatgcgagtttctcttttgtctttaataggtaaatttggattatttgattttcttacttatgagtgcagtaacatg |
20301720 |
T |
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| Q |
370 |
ttctgaatatcccnnnnnnnatttgtggtattgaaatctataattgcatgttt |
422 |
Q |
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| T |
20301721 |
ttctgaatatccc-tattttatttgtggtattgaaatctataactgcatgttt |
20301772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 20301801 - 20301875
Alignment:
| Q |
421 |
ttcaatttgatggctgagtgtaatttctagtcggaacaattttttgaagcttctttatctcttgtacatcattat |
495 |
Q |
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| T |
20301801 |
ttcaatttgatgactgactgtaatttctagtcggaacaattttttgaagcttctttattttttgtacatcattat |
20301875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 344
Target Start/End: Original strand, 20299167 - 20299262
Alignment:
| Q |
249 |
tttgcaggatatgcctctcatgtctcttgactatggtttccttgttatgtgagtttctcttttgtctttaataggtaagtttagattatttgattt |
344 |
Q |
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| T |
20299167 |
tttgcaggctatgccactcctgttttttcactatggtctcctagttatgttagtttctctttggtctttcgtaggtaagttttgatcattttattt |
20299262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 30481420 - 30481250
Alignment:
| Q |
111 |
gctcactctttggcaggtgatgtttctgctactgatttcaacaggaatcaaaaaacagagatgttggtgtttctgcctccatctttatttcttttgactg |
210 |
Q |
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| T |
30481420 |
gctcactctttggcaggtgatgtttctgctactgatttcaacaggaatcaaaaaacagagatgttggtgtttctgcctccatctttatttcttttgactg |
30481321 |
T |
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| Q |
211 |
tttttcatacggtgtataacaatctctttggtactctatttgcaggatatgcctctcatgtctcttgactatggtttcctt |
291 |
Q |
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| T |
30481320 |
tgtttc---------ataacaatctc-ttggtactctatttgcaggatatgcctctcatgtctcttgactatggtttcctt |
30481250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 390 - 495
Target Start/End: Complemental strand, 30481220 - 30481115
Alignment:
| Q |
390 |
atttgtggtattgaaatctataattgcatgtttcaatttgatggctgagtgtaatttctagtcggaacaattttttgaagcttctttatctcttgtacat |
489 |
Q |
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| T |
30481220 |
atttgtggtattgaaatctataattgcatgtttcaatttgatggctgagtgtaatttctagtcggaacaattttttaaagcttctttgtctcttttacat |
30481121 |
T |
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| Q |
490 |
cattat |
495 |
Q |
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|||||| |
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| T |
30481120 |
cattat |
30481115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 186 - 381
Target Start/End: Original strand, 30246320 - 30246518
Alignment:
| Q |
186 |
cctccatctttatttcttttgactgtttttcatacggtgta-taacaatctctttggtactctatttgcaggatatgcctctcatgtctcttgactatgg |
284 |
Q |
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| T |
30246320 |
cctccgtctttatttctattgactgtgtttcttacagggcagtaacaatttctt-ggtagtctctttgtaggatatgcctctcatgtctcttgactttgg |
30246418 |
T |
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| Q |
285 |
tttccttgttatgtgagtttctcttttgtctttaataggtaagtttagattatttgattttctta---cttatcagtgaagtaacatgttctgaatatcc |
381 |
Q |
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| T |
30246419 |
tttccttgttatgcgactttatcttttggctatcataggtaagtttggattatcttatttccttacttcttatcagtgcagtaacatgtcctgaatatcc |
30246518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 30225203 - 30225254
Alignment:
| Q |
421 |
ttcaatttgatggctgagtgtaatttctagtcggaacaattttttgaagctt |
472 |
Q |
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| T |
30225203 |
ttcattttgatgactgactgtaatttctagtcagaacaatttcttgaagctt |
30225254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 30204933 - 30204857
Alignment:
| Q |
241 |
gtactctatttgcaggatatgcctctcatgtctcttgactatggtttccttgttatgtgagtttctcttttgtcttt |
317 |
Q |
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| T |
30204933 |
gtactctctttgcaagatgagccactcttgtctcttcacaatggtctccttgttatgttagtttctgtgttgtcttt |
30204857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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