View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_7 (Length: 508)
Name: NF8249_low_7
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 442
Target Start/End: Complemental strand, 37625588 - 37625207
Alignment:
| Q |
37 |
attttcttaccatggaaaaaatttgttttaccagatccattagcaccaactgcagaaaaatgagcaaacagatactattgatatgttactaaaaaatacc |
136 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
37625588 |
attttcttaccatggaaaaaaattgttttgccagatccattagcaccaactgcaaaaaaatgagcaaacagatactattg--atgttactaagaaatacc |
37625491 |
T |
|
| Q |
137 |
attcaagcacattaatttggaacaacttcacagtaaattacatggaataaacataaggaagaagcatgagagtataaagaagtagtgaaaatgatgagaa |
236 |
Q |
| |
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|| | |||||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||| | ||| ||||||||| ||||| |
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| T |
37625490 |
atcaaggcacattagtttgaaacaacttcacaataagttagatggaataaacataaggaagaagcatgagagaataaaaatgtaatgaaaatgaagagaa |
37625391 |
T |
|
| Q |
237 |
tgtacttcccaataggattgattcattttgctag-ccccttcccagaaatagtttaactagtaaatattcatttagtaaaccccagtctctaactcatca |
335 |
Q |
| |
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|||| ||| ||| || |||||| |||||||| |||| |||||||||||||| |||| |||||| ||||||||||||| |
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| T |
37625390 |
tgtaattcgcaacag----gattcactttgctagcccccctcccagaaatagttgaactggtaaat-------------------ctctctaactcatct |
37625314 |
T |
|
| Q |
336 |
tccaaataagattcctttcagtagcctcgattaagaaatggaatcgaagttttgttctaaagtaaatcctttcatttggattttggataattatattcaa |
435 |
Q |
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|||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37625313 |
tccaaacaagattcctttcaatagccccgattaggaaatggaatcgaagttttgttctaaagtaaatcctttcatttcgattttggataattatattcaa |
37625214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 203 - 441
Target Start/End: Complemental strand, 29656061 - 29655817
Alignment:
| Q |
203 |
tgagagtataaagaagtagtgaaaatgatgagaatgtacttcccaataggattgattcattttgctagccccttcccagaaatagtttaactagtaaata |
302 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
29656061 |
tgagagtataaagaagtagtgcaaatgatgagaatgtacttcccaataggtatgattcagtttgctagccctttcccagaaatagtttaactagtaaata |
29655962 |
T |
|
| Q |
303 |
ttcatttagtaaaccccagtctctaactcatcatccaaata------agattcctttcagtagcctcgattaagaaatggaatcgaagttttgttctaaa |
396 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29655961 |
ttcgtttagtaaaccccactctctaactcatcatccaaataggattctgattcctttcagtagcctcgattaagaaatggaatcgaagttttgttctaaa |
29655862 |
T |
|
| Q |
397 |
gtaaatcctttcatttggattttggataattatattcaatagaat |
441 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
29655861 |
gtaaatcctttcatttggattttggataatcatatcgaatagaat |
29655817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 37 - 442
Target Start/End: Complemental strand, 37802126 - 37801745
Alignment:
| Q |
37 |
attttcttaccatggaaaaaatttgttttaccagatccattagcaccaactgcagaaaaatgagcaaacagatactattgatatgttactaaaaaatacc |
136 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
37802126 |
attttcttaccatggaaaaaaattgttttgccagatccattagcaccaactgcaaaaaaatgagcaaacagatactattg--atgttactaagaaatacc |
37802029 |
T |
|
| Q |
137 |
attcaagcacattaatttggaacaacttcacagtaaattacatggaataaacataaggaagaagcatgagagtataaagaagtagtgaaaatgatgagaa |
236 |
Q |
| |
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|| | |||||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||| | ||| ||||||||| ||||| |
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| T |
37802028 |
atcaaggcacattagtttgaaacaacttcacaataagttagatggaataaacataaggaagaagcatgagagaataaaaatgtaatgaaaatgaagagaa |
37801929 |
T |
|
| Q |
237 |
tgtacttcccaataggattgattcattttgctag-ccccttcccagaaatagtttaactagtaaatattcatttagtaaaccccagtctctaactcatca |
335 |
Q |
| |
|
|||| ||| ||| || |||||| |||||||| |||| |||||||||||| | |||| |||||| ||||||||||||| |
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| T |
37801928 |
tgtaattcgcaacag----gattcactttgctagcccccctcccagaaatagctgaactggtaaat-------------------ctctctaactcatct |
37801852 |
T |
|
| Q |
336 |
tccaaataagattcctttcagtagcctcgattaagaaatggaatcgaagttttgttctaaagtaaatcctttcatttggattttggataattatattcaa |
435 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37801851 |
tccaaacaagattcctttcaatagccccgattaggaaatggaatcaaagttttgttctaaagtaaatcctttcatttcgattttggataattatattcaa |
37801752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 29657094 - 29656991
Alignment:
| Q |
98 |
gagcaaacagatactattgatatgttactaaaaaataccattcaagcacattaatttggaacaacttcacagtaaattacatggaataaacataaggaag |
197 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
29657094 |
gagcaaacagatactattgat--gttactaagaaataccattcaggcacattaatttgaaacaactacacagtaaattacatggaataaacacaaggaag |
29656997 |
T |
|
| Q |
198 |
aagcat |
203 |
Q |
| |
|
|||||| |
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|
| T |
29656996 |
aagcat |
29656991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 20729564 - 20729473
Alignment:
| Q |
24 |
acaggatatgacaattttcttaccatggaaaaaatttgttttaccagatccattagcaccaactgcagaaaaatgagcaaacagatactatt |
115 |
Q |
| |
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|||||| ||| | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20729564 |
acaggaaatggcgattttcttaccatggaaaaaaattgttttgccagatccattagcaccaactgcaaaaaaatgagcaaacagatactatt |
20729473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 20729413 - 20729355
Alignment:
| Q |
158 |
acaacttcacagtaaattacatggaataaacataaggaagaagcatgagagtataaaga |
216 |
Q |
| |
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||||||||||| ||||||| |||||||||||| ||||||||| || ||||||| |||| |
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| T |
20729413 |
acaacttcacattaaattagatggaataaacaaaaggaagaattatcagagtatgaaga |
20729355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 50934662 - 50934732
Alignment:
| Q |
24 |
acaggatatgacaattttcttaccatggaaaaaatttgttttaccagatccattagcaccaactgcagaaaa |
95 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||| |||| |
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|
| T |
50934662 |
acaggaaatggcaattttcttaccatagaaaaaattagtttga-cagatccattagcaccaactgcaaaaaa |
50934732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 50934837 - 50934919
Alignment:
| Q |
157 |
aacaacttcacagtaaattacatggaataaacataaggaagaagcatgagagtataaagaagtagtgaaaatgatgagaatgt |
239 |
Q |
| |
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|||||||||||| ||||||| |||||||||||| ||||||||| | | ||||||||||| || ||||||||| |||||||| |
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| T |
50934837 |
aacaacttcacattaaattagatggaataaacaaaaggaagaatcttcagagtataaagtggtgatgaaaatgaagagaatgt |
50934919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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