View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_low_8 (Length: 478)
Name: NF8249_low_8
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 5 - 462
Target Start/End: Complemental strand, 593169 - 592706
Alignment:
| Q |
5 |
gtttggagtttgtatcaattctagttggtggtctggcaacacctgtggtgatctgtacata-cgctgcaggctggtgctgtgtccggtaaactgacggcg |
103 |
Q |
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| T |
593169 |
gtttggagtttgtatcaattctagttggtggtctggcaacacctgtggtgatctgtacataacgctgcaggctggtgctgtgtccggaaaactgactgcg |
593070 |
T |
|
| Q |
104 |
gttttaattgaatgatttggctttatgaccttaggcgagatcagttatataggcagtattctaagtgaagaattttagctctggaatgagaactgatgag |
203 |
Q |
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| T |
593069 |
gttttaattgaatgatttggctttatgaccttaggcgagatcagttatataggcagtattctaagtgaagaattttagctctggaatgagaactgatgag |
592970 |
T |
|
| Q |
204 |
t---aacactaatgagtagaaaattaagagaataaatgttactccatctgttccctgtgttgtttttctagaaattttgtgtttatattaatttgtcatt |
300 |
Q |
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| T |
592969 |
ttataacactaatgagtagaaaattaagagaataaatgttactccatctgttccctgtgttgtttttctagaaattttgtgtttctattaatttgtcatt |
592870 |
T |
|
| Q |
301 |
ttcaaatttaaagtagtattaacaatatcaaaaggtaaattttttcccttaccttttaatatatnnnnnnnnnnnnnnnnngcatcaacagaaacaattc |
400 |
Q |
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| T |
592869 |
ttcaaatttaaagtagtattaacaatatcaaaaggtaaattttttcccttaccttttaatatatatataaaaaaaaaaaaa-catcaaaagaaacaattc |
592771 |
T |
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| Q |
401 |
catcaaaatt---aacatggtagttgggggtgataaccttagacgacaattgaacatgaatggag |
462 |
Q |
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| T |
592770 |
catcaaaattaacaacatggtagttgggggtgataaccttagacgacaattgaaaatgaatggag |
592706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 579252 - 579612
Alignment:
| Q |
5 |
gtttggagtttgtatcaattctagttggtggtctggcaacacctgtggtgatctgtacata-cgctgcaggctggtgctgtgtccggtaaactgacggcg |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| |
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| T |
579252 |
gtttggagtttgtatcaattctagttggtggtctggcaacacctgtggtgatctgtacataacgctgcaggctggtgctgtgtccggaaaactgactgcg |
579351 |
T |
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| Q |
104 |
gttttaattgaatgatttggctttatgaccttaggcgagatcagttatataggcagtattctaagtgaagaattttagctctggaatgagaactgatgag |
203 |
Q |
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| T |
579352 |
gttttaattgaatgatttggctttatgaccttaggcgagatcagttatataggcagtattctaagtgaagaattttagctctggaatgagaactgatgag |
579451 |
T |
|
| Q |
204 |
---taacactaatgagtagaaaattaagagaataaatgttactccatctgttccctgtgttgtttttctagaaattttgtgtttatattaatttgtcatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
579452 |
ttataacactaatgagtagaaaattaagagaataaatgttactccatctgttccctgtgttgtttttctagaaattttgtgtttctattaatttgtcatt |
579551 |
T |
|
| Q |
301 |
ttcaaatttaaagtagtattaac----aatatcaaaaggtaaattttttcccttacctttt |
357 |
Q |
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||||||||||||||||||||||| || || |||||| || ||||||||||| |||||| |
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| T |
579552 |
ttcaaatttaaagtagtattaactattaacattaaaaggaaacttttttcccttgcctttt |
579612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 383 - 457
Target Start/End: Original strand, 579640 - 579717
Alignment:
| Q |
383 |
catcaacagaaacaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaa |
457 |
Q |
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|||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||| |
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| T |
579640 |
catcaaaagaaacaattctatcaaaattaacaacatggtagttgggggtgataaacttaaacgacaattgaaaatgaa |
579717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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