View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_high_11 (Length: 265)
Name: NF8250_high_11
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 34811972 - 34812201
Alignment:
| Q |
25 |
ttttaaatcgtagcagttgctatatgtgtaatccagccgggtgatgtatgtattgaaggagtaagtttgtggtatagtaactaatgattgcatatgtatg |
124 |
Q |
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| T |
34811972 |
ttttaaatcgtagcagttgctatatgtgtaatccagccgtgtgatgtatgtattgaaggagtaagtttgtggtatagtaactaatgattgcatatgtatg |
34812071 |
T |
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| Q |
125 |
gagtaatctctgtcgtttcctaagttaaaccatcaacatccacctgctgttaaagataacaggtagttagcaatgctctacatatacgttcaatacatca |
224 |
Q |
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| T |
34812072 |
gagtaatctttgtcgtttcctaagttaaaccatcaacatccacctgctgttgaagataacaagtacttagcaatgctctacatatacgttcaatacatca |
34812171 |
T |
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| Q |
225 |
atgaagagaataaaaattagaagaaacatg |
254 |
Q |
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| T |
34812172 |
atgaagagaataaaaattagaagaaacatg |
34812201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 35862524 - 35862664
Alignment:
| Q |
107 |
aatgattgcatatgtatggagtaatctctgtc-gtttcctaagttaaaccatcaacatccacctgctgttaaagataacaggtagttagcaatgctctac |
205 |
Q |
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| T |
35862524 |
aatgactgcatatgcatggaggaatcactgtctgcttcctaaattaaac-atcaacatctacctgcggttaaagataacaattcattagcaatactc--- |
35862619 |
T |
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| Q |
206 |
atatacgttcaatacatcaatgaagagaataaaaattagaagaaac |
251 |
Q |
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| T |
35862620 |
-tatacgttcaatacttcaatgaagagaattaaaattagaagaaac |
35862664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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