View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_high_3 (Length: 573)
Name: NF8250_high_3
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 45670610 - 45671165
Alignment:
| Q |
18 |
atcaggagaagaaaacagaaaactagatcacttaatgacttnnnnnnngattaaatccaatggaaccagactaaattgaaaacgataaacaatggatgat |
117 |
Q |
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| T |
45670610 |
atcaggagaagaaaacagaaaactagatcacttaatgacttaaaaaaagattaaatccaatggaaccagactaaattgaaaacgataaacaatggatgat |
45670709 |
T |
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| Q |
118 |
taaaattatgatggccaagataaagatagagagaagggccaggtcgtttgccccagaaaattcattaaggaacagttaacatggtaaatgaaggcataca |
217 |
Q |
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| T |
45670710 |
taaaattatgatggccaagataaagatagagagaagggccaggtcgtttgccccagaaaattcattaaggaacagttaacatggtaaatgaaggcataca |
45670809 |
T |
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| Q |
218 |
tatacgatggaccatattaactatttgaacttgagagtccggagtaggcctacattgttcttggttttaatttgttatgaagtttccttacataatagta |
317 |
Q |
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| T |
45670810 |
tatacgatggcccatattaactatttgaacttgagagtccggagtaggcctacattgttcttggttttaatttgttatgaagtttccttacataatagta |
45670909 |
T |
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| Q |
318 |
ttggatgaaatttgttttgaattgttcataaaaccatccattaatttaaattttgggcccctaacaaataaattacattctacccatatctgaacatatc |
417 |
Q |
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| T |
45670910 |
ttggatgaaatttgttttgaattgttcataaaaccatccattaatttaaattttgggcccctaacaaataaattacattcttcccatatctgaacatatc |
45671009 |
T |
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| Q |
418 |
acccaaaataaaatgaatacatgatcaaatgcaaataaataataatgagcggggttccttccgaaactgacacttaagagattcacaaaagcaatcactt |
517 |
Q |
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| T |
45671010 |
acccaaaataaaatgaatatttgatcaagtgcaaataaataataatgagcggggttccttccaaaactgacacttaagagattcacaaaagcaatcactt |
45671109 |
T |
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| Q |
518 |
acagcagtttgtgggtaagtcattcacattcatatattccaagtatccactatgtc |
573 |
Q |
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| T |
45671110 |
acagcagtttgtgggtaagtcattcacattcatatattccaagtatccactatgtc |
45671165 |
T |
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