View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_high_4 (Length: 436)
Name: NF8250_high_4
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 190 - 428
Target Start/End: Original strand, 33398417 - 33398657
Alignment:
| Q |
190 |
ttcttgaaggtgtgatttgaaagtcttcaatttcgtcaattgtatcacctttaatttcatcaatccatgcttgctccgaatgcatagaacattcataaac |
289 |
Q |
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| T |
33398417 |
ttcttgaaggtgtgatttgaaagtcttcaatttcgtcaattgtatgacctttaatttcatcaatccatgcttgctccgaatgcatagaacattcataaac |
33398516 |
T |
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| Q |
290 |
aatatcattgcacttgatacagacataaa--atattttctgactttgcaatttggtttatattatctttttcacaaatacattgaaaagaagagaaactt |
387 |
Q |
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| T |
33398517 |
aatatcattgcacttgatatagacataaaatatattttctgactttgcaatttggtttatattatctttttcacaaatacattgaaaagaagagaaactt |
33398616 |
T |
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| Q |
388 |
ttagttatgcattattagtatttaatttttcattctctgct |
428 |
Q |
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| T |
33398617 |
ttagttatgcattattagtatttaatttttcattctttgct |
33398657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 33398309 - 33398416
Alignment:
| Q |
57 |
gtctccagaaagcatctcatcgcggctttgatatcagcatgaagggtagacatcttcacggatgtgatacttatgagcttaagatttaatcatgtgaatt |
156 |
Q |
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| T |
33398309 |
gtctctagaaagcatcgcatcgcggctttgatatcagcatgaaggatagacatcttcacggatgtgatgcttatgagcttaagatttaatcatgtgaatt |
33398408 |
T |
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| Q |
157 |
cttaatag |
164 |
Q |
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|||||||| |
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| T |
33398409 |
cttaatag |
33398416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 33398237 - 33398276
Alignment:
| Q |
19 |
aagagaaaaatagagaattctttggattttgagaaaacgt |
58 |
Q |
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| T |
33398237 |
aagagaaaaatagagaattctttggattttgagaaaacgt |
33398276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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