View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_10 (Length: 465)
Name: NF8250_low_10
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 49156342 - 49156210
Alignment:
| Q |
3 |
tcgagtttggtgttggaagttgctcagcatttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgttgttcgtggatggcgtgttc |
102 |
Q |
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| T |
49156342 |
tcgagattggtgttggaagttgctcagcatttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgttgttcgtggatggcgtgttc |
49156243 |
T |
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| Q |
103 |
ttaacaccggttctcccatcagtgtaaatatct |
135 |
Q |
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| T |
49156242 |
ttaacaccggttctcccatcagtgtaaatatct |
49156210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 49156143 - 49156030
Alignment:
| Q |
202 |
tgagatctgattttgaaatcattgcggtttgaattttaagttgcgtttcatggatctatatgtgtttttcctcattatgtatttccgtaattcattaaga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
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| T |
49156143 |
tgagatctgattttgaaatcattgcggtttgaattttaagttgcgtttcatggatctagatgtgtttttcctcattatgtaattacgtaattcattaaga |
49156044 |
T |
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| Q |
302 |
tttgattctcttga |
315 |
Q |
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| T |
49156043 |
tttgattctcttga |
49156030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 353 - 456
Target Start/End: Complemental strand, 49155994 - 49155891
Alignment:
| Q |
353 |
tggatgctgagtttgatgctttataattattggaagaaatgtatttagtgttatgagctattggttgtctgcatcctgctatcaattggatgaataatga |
452 |
Q |
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| T |
49155994 |
tggatgctgagtttgatgctttataattattggaagaaatggatttagtgttatgagctattggttgtctgcatcctgctatcaattggatgaataatga |
49155895 |
T |
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| Q |
453 |
tgtc |
456 |
Q |
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|||| |
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| T |
49155894 |
tgtc |
49155891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 49160511 - 49160388
Alignment:
| Q |
9 |
ttggtgttggaagttgctcagcatttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgttgttcgtggatggcgtgttcttaaca |
108 |
Q |
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||||||||||| ||||| || ||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||| | || ||||||||||| |||| |
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| T |
49160511 |
ttggtgttggaggttgcacaacatatgggtgaaggtgttgtgagaactattgctatggatgccactgaaggagttgttagagggtggcgtgttctcaaca |
49160412 |
T |
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| Q |
109 |
ccggttctcccatcagtgtaaata |
132 |
Q |
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| T |
49160411 |
ccggctcccctatcagtgtaaata |
49160388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 45639353 - 45639271
Alignment:
| Q |
3 |
tcgagtttggtgttggaagttgctcagcatttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgttgt |
85 |
Q |
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| T |
45639353 |
tcgagattggtgttggaactgactcagcatttgggtgaaggtgttgtgagaaccattgctatggatgctactgaaggtgttgt |
45639271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 39266089 - 39266032
Alignment:
| Q |
361 |
gagtttgatgctttataattattggaagaaatgtatttagtgttatgagctattggtt |
418 |
Q |
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|||||||||||||||||||| |||||||| ||| |||||||||||||| |||| |||| |
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| T |
39266089 |
gagtttgatgctttataattgttggaagagatgaatttagtgttatgaactataggtt |
39266032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 6619344 - 6619292
Alignment:
| Q |
30 |
catttgggtgaaggtgttgtgagaacgattgctatggatgctactgaaggtgt |
82 |
Q |
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|||||| |||||||||| ||||||| |||| ||||||||||| ||||||||| |
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| T |
6619344 |
catttgcgtgaaggtgtaatgagaacaattgatatggatgctaatgaaggtgt |
6619292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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