View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_13 (Length: 434)
Name: NF8250_low_13
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 48 - 415
Target Start/End: Original strand, 6215363 - 6215729
Alignment:
| Q |
48 |
taagattgtcagaatcacagtaagccaccgtaacaaaatcacagtgtcaccgtaatttggctaaactcactatcaatccgaacatactataaaattataa |
147 |
Q |
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| T |
6215363 |
taagattgtcagaatcacagtaagccaccgtaacaaaatcacagtgtcaccgtaatttggctaaactcactatcaattcgaacatactataaaattataa |
6215462 |
T |
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| Q |
148 |
aatttgaatgtataccttcaaagttaattcccttaggagaaagcaaagcatttgcacaactccaaaacatgaacaatgtaacaaaacatagaaaaacttc |
247 |
Q |
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| T |
6215463 |
aatttgaa-gtataccttcaaagttaattcccttaggagaaagcaaagcatttgcacaactccaaaacatgaacaatgtaacaaaacatagaaaaacttc |
6215561 |
T |
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| Q |
248 |
tcctctaaacatcttcattgaacaaaacaaacaagattgaagtaatggatagatattgataacaacagttctcaagtggnnnnnnncaaaataagaaaga |
347 |
Q |
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| T |
6215562 |
tcctctaaacatcttcattgaacaaaacaaacaagattgaagtaatggatagatattgataacaacagttctcaagtggtttttttcaaaataagaaaga |
6215661 |
T |
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| Q |
348 |
aaccatgttcacnnnnnnnncatgacagaatctaccattcaccaaaacatttgtgtcagaaacaaaca |
415 |
Q |
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| T |
6215662 |
aaccatgttcacttttttttcatgacagaatctaccattcaccaaaacatttgtgtcagaaacaaaca |
6215729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 39553842 - 39553896
Alignment:
| Q |
79 |
aacaaaatcacagtgtcaccgtaatttggctaaactcactatcaatccgaacata |
133 |
Q |
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| T |
39553842 |
aacaaaatcacagtgtcaccgtgattttaccaaactcactgtcaatccaaacata |
39553896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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