View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_14 (Length: 411)
Name: NF8250_low_14
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 21838984 - 21838596
Alignment:
| Q |
1 |
catatatacatctgccctactatatataggtgacgtacgcagtcagatatcccttcctggccactgctgcaaattaaaaaataaatttgttcgtataatt |
100 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21838984 |
catatatacatctgccctactatatataggttatgtacgcagtcagat--cccttcctggccactgctgcaaattaaaaaataaatttgttcgtatagtt |
21838887 |
T |
|
| Q |
101 |
actaatttaggaaacaaaaatgtcaaatggatcacttttcctcnnnnnnnnnnnnnnnntggatcactatattaattgtttaacattaggaattagttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21838886 |
actaatttaggaaacaaaaatgtcaaatggatcacttttcctcaaaaaaaataaaaa--tggatcactatattaattgcttaacattaggaattagttgt |
21838789 |
T |
|
| Q |
201 |
taaaatttataccatttcaaagaaatgacatattgtagcctaggcaacatgtcttttaaaatgttacaacatatatatgcctctagatatgtattagcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
21838788 |
taaaatttataccatttcaaagaaatgacatattgtagcctaagcaacatgtcttttaaaatgttacaaaatatat--gcctctagagatgtattagcaa |
21838691 |
T |
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| Q |
301 |
catttttgtaaatgtaacaaccaaatgttgtcaaagggtataaatgcatagccgtgcatgcaggcctgccttgcgcttagaaccatgaacacctt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21838690 |
catttttgtaaatgtaacaaccaaatgttgtcaaagggtataaatgcatagccgtgcatgcaggcctgccttgcccttagaaccatgaacacctt |
21838596 |
T |
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