View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_15 (Length: 386)
Name: NF8250_low_15
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 43023671 - 43023324
Alignment:
| Q |
22 |
taacattctactgatttcctttattttatcaaatccaaacatagtcgtctaagaaaacctcattcctaacgaagattgaattccacacgtcaaatatgat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43023671 |
taacattctactgatttcctttattttatcaaatccaaacatagtcgtctaagaaaacctcattcctaacgaagattgaattccacacgtcaaatatgat |
43023572 |
T |
|
| Q |
122 |
tttctttccattaaagcctctgagttctgggatttttgatgttttatgttgacacctttttcctgtatgcagacaaggttcatactttggcactggtaga |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43023571 |
tttctttccattaaagcctctgagttctgggatttttgatgttttatgttgacacctttttcctgtatgcagacaaggttcatactttggcgctggtaga |
43023472 |
T |
|
| Q |
222 |
ggttttcgaagggccgtgggtggtggaaggactgggggtggacgtggttttggtgattttctttttctatctcgatctctatatatattatacatttatg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43023471 |
ggttttcgaagggccgtgggtggtggaaggactgggggtggacgtggttttggtgattttctttttctatctcgatctctatatatattatacatttatg |
43023372 |
T |
|
| Q |
322 |
agtgatttgcttttttgaatacaaatattaacagttaatagactgatg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43023371 |
agtgatttgcttttttgaatacaaatattaacagttaatagactgatg |
43023324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 32 - 369
Target Start/End: Complemental strand, 35062333 - 35061995
Alignment:
| Q |
32 |
ctgatttcctttattttatcaaatccaaacatagtcgtctaagaaaacctcattcctaacgaagattgaattccacacgtcaaatatgattttctttcca |
131 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35062333 |
ctgatttcctttattttatcaaatccaattatagtcatctaagaaaacctcattcccaacgaagattgaattccacacgtcaaatatgattttctttcca |
35062234 |
T |
|
| Q |
132 |
ttaaagcctctgagttctgggatttttgatgttttatgttgacac---ctttttcctgtatgcagacaaggttcatactttggcactggtagaggttttc |
228 |
Q |
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||||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35062233 |
ttaaagcctttgagttctaggctttttcatgttttaggttgacaccttctttttcctgtatgcagacaaggttcatactttggcgctggtagaggttttc |
35062134 |
T |
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| Q |
229 |
gaagggccgtgggtggtggaaggactgggggtggacgtggttttggtgattttctttttctatctcgatctctatatatattatacatttatgagtgatt |
328 |
Q |
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|||||| | ||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
35062133 |
gaaggggcatgggtggtggaaggattgggggtggacgtggttttggtgattctatttctctatctccatctc--tatatattatacatttatggatgatt |
35062036 |
T |
|
| Q |
329 |
tgcttttttgaatacaaatattaacagttaatagactgatg |
369 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35062035 |
tgcttttttgaatgcaaatattaacagttaatagactgatg |
35061995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 42813345 - 42813068
Alignment:
| Q |
22 |
taacattctact--gatttcctttattttatcaaatccaaacatagtcgtctaagaaaacctcattcctaacgaagattgaattccacacgtcaaatatg |
119 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
42813345 |
taacattctactctgatttcgtttattttatcaaatccaaacatagtcgtctaagaaaacctcattcccaacgaagattgaattccacatgtcaaatatg |
42813246 |
T |
|
| Q |
120 |
attttctttccattaaagcctctgagttctgggatttttgatgttttatgttgacac---ctttttcctgtatgcagacaaggttcatactttggcactg |
216 |
Q |
| |
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||||||||||||||||||| || ||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| ||| |
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| T |
42813245 |
attttctttccattaaagcttccaagttctgggctttttgatgttttaggttgacaccttctttttcctgtatgcagacaaggttcagactttggcgctg |
42813146 |
T |
|
| Q |
217 |
gtagaggttttcgaagggccgtgggtggtggaaggactgggggtggacgtggttttggtgattttctttttctatctc |
294 |
Q |
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|||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |
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| T |
42813145 |
gtagaggttttcgaaggggtgcagttggtggaaggattgggggtggacgtggttttggtgattttctttctctctctc |
42813068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 42813015 - 42812946
Alignment:
| Q |
301 |
tatatatattata-catttatgagtgatttgcttttttgaatacaaatattaacagttaatagactgatg |
369 |
Q |
| |
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||||||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
42813015 |
tatatatattataacatctatgggtgattttcttttttgaatacaaatattaacagttaataaactgatg |
42812946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 41564310 - 41564441
Alignment:
| Q |
151 |
ggatttttgatgttttatgttgacacctttttcctgtatgcagacaaggttcatactttggcactggtagaggttttcgaagggccgtgggtggtggaag |
250 |
Q |
| |
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|||||| | ||||| |||||||| || |||| || |||||| ||||||||| ||||||| |||||||||||||| |||||| | ||||||| | | |
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| T |
41564310 |
ggatttctaatgttctatgttgattccatttttttgcatgcagtcaaggttcagactttggtgctggtagaggttttggaaggggcatgggtgg---acg |
41564406 |
T |
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| Q |
251 |
gactgggggtggacgtggttttggtgattttcttt |
285 |
Q |
| |
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|| || |||||||||||||| ||||||| ||||| |
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| T |
41564407 |
gatgggtggtggacgtggtttcggtgattctcttt |
41564441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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