View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_17 (Length: 379)
Name: NF8250_low_17
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 189 - 365
Target Start/End: Complemental strand, 24850276 - 24850100
Alignment:
| Q |
189 |
aagtttggaggttggatattagtcaagttaccaatcgaataaaataccactccagaatcagctgtgtttctactaatttttgaattttgacaaataaatt |
288 |
Q |
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| T |
24850276 |
aagtttggaggttggacattagtcaagttaccaatcgaataaaataccactccagaatcagctgtgtttctactaatttttgaattttgacaaataaatt |
24850177 |
T |
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| Q |
289 |
tacttagatcagttactatgttgtatcagatcaaggtagcatgnnnnnnnagaggatctgcaaggtagcatgttcct |
365 |
Q |
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| T |
24850176 |
tacttagatcagttactatgttgtatcagatcaaggtagcatgtttttttagaggatctgcaaggtagcatgttcct |
24850100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 38439616 - 38439452
Alignment:
| Q |
1 |
ttaataaattgaaagttaatttctccgcaacgatcaacaacatttgtatgagaattatctgtagaagtaatataaagaccgttagtaggagaaatataca |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
38439616 |
ttaataaattgaaagttaatttctccacaacgatcaacaacatttgtatgagaatcatctgcagaagtaatataaagactgttagtaggagaaatataca |
38439517 |
T |
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| Q |
101 |
taaaatttgaactcacaattaggtccttaaacttatttttcttttggaaaggatggttttagatc |
165 |
Q |
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| T |
38439516 |
tcaaatttgaactcacaattaggtccttaaacttatttttcttttggaaaggatggttttagatc |
38439452 |
T |
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