View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8250_low_19 (Length: 358)
Name: NF8250_low_19
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 28 - 344
Target Start/End: Original strand, 30235018 - 30235337
Alignment:
| Q |
28 |
ttattgtgaatcctaagggagaaatgaaaggtatcatttgttcatttgtctgatatctct--agtaaatactgtttatactt-gggacctaatgctcgtg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| || |
|
|
| T |
30235018 |
ttattgtgaatcctaagggagaaatgaaaggtatcatttgttcatttgtctgatatctctgtattaaatactgtttatactttgggacctaatgctcatg |
30235117 |
T |
|
| Q |
125 |
acaatatgtttaggtcttttgtaactgaagtgtaatattaaattaatacacttgcttcagtgccttttggtttttgttacaatttggtaatgcttgggtg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30235118 |
ccaatatgtttaggtcttttgtaactgaagtgtaatattaaattaatacacttgcttccgtgccttttggtttttgttacaatgtggtaatgcttgggtg |
30235217 |
T |
|
| Q |
225 |
ttattttttcacaagnnnnnnntcattataccacctgtctttttgttagtttgctacattgttacctttgtaccgttttgtctaatcgattcattgctgg |
324 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30235218 |
ttattttttcacaagaaaaatatcattataccacctgtctttttgttagtttgctacattgttacctttgtaccgttttgtctaattgattcattgctgg |
30235317 |
T |
|
| Q |
325 |
tatttgattgtgtcttgatg |
344 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30235318 |
tatttgattgtgtcttgatg |
30235337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8425305 - 8425363
Alignment:
| Q |
1 |
tcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaatgaaaggt |
59 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
8425305 |
tcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
8425363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 25153765 - 25154083
Alignment:
| Q |
28 |
ttattgtgaatcctaagggagaaatgaaaggtatcatttgttcatttgtctgatatctc--tagtaaatactgtttata--cttgggacctaatgctcgt |
123 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| | | ||||| ||||| ||||||||||| | |
|
|
| T |
25153765 |
ttattgttaatcctaagggagaaatgaaagttatcatttgttcatttatctgatatctcagtagtaaactcagattatatacttggaacctaatgctcat |
25153864 |
T |
|
| Q |
124 |
gacaatatgtttaggtcttttgtaactgaa------gtgtaatattaaattaatacacttgcttcagtgccttttggtttttgttacaatttggtaatgc |
217 |
Q |
| |
|
| ||| ||||||| |||||||||| |||| |||| |||||||| |||||||||| |||||||||||||||| | |||||| ||| |||| |||| |
|
|
| T |
25153865 |
gcaaatgtgtttagatcttttgtaattgaaattgaagtgtcatattaaactaatacactttcttcagtgccttttggctattgttataatgtggttatgc |
25153964 |
T |
|
| Q |
218 |
ttgggtgttattttttcacaagnnnnnnntcattatacca-----cctgtctttttgttagtttgctacattgttacctttgtaccgttttgtctaatcg |
312 |
Q |
| |
|
|| |||| ||||||||||||| ||||| |||| ||||||||||||||||||| |||||||| |||||||| || |||||||||||| | |
|
|
| T |
25153965 |
ttctgtgtaattttttcacaagaaaaaaa-cattacaccacaccacctgtctttttgttagttttctacattg-tacctttggactgttttgtctaattg |
25154062 |
T |
|
| Q |
313 |
attcattgctggtatttgatt |
333 |
Q |
| |
|
|||||||| || ||||||||| |
|
|
| T |
25154063 |
attcattgttgatatttgatt |
25154083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 29758710 - 29759007
Alignment:
| Q |
28 |
ttattgtgaatcctaagggagaaatgaaaggtatcatttgttcatttgtctgatatctctagtaaatactgtttata--cttgggacctaatgctcgtga |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | | ||||| ||||||||||||||||| || |
|
|
| T |
29758710 |
ttattgtgaatcctaagggagaaatgaaaggtatcatttgttcatttttctg-------tagtaaactcagattatatacttgggacctaatgctcatgc |
29758802 |
T |
|
| Q |
126 |
caatatgtttaggtcttttgtaactgaa------gtgtaatattaaattaatacacttgcttcagtgccttttggtttttgttacaatttggtaatgctt |
219 |
Q |
| |
|
||||||||||| |||||||||| |||| |||| ||||||||||| ||||||| ||||| |||||||||| | |||||| ||| |||| ||||| |
|
|
| T |
29758803 |
aaatatgtttagatcttttgtaattgaaattgaagtgtcatattaaattagtacactttcttcattgccttttggctattgttataatgtggttatgcta |
29758902 |
T |
|
| Q |
220 |
gggtgttattttttcacaagnnnnnnntcattataccacctgtctttttgttagtttgctacattgtt--acctttgtaccgttttgtctaatcgattca |
317 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||| ||| || |||||| || |||||||||||| |||||| |
|
|
| T |
29758903 |
-------attttttcacaagaaaaa----aacataccacctgtctttttgttagtttgctaaattattttaccttttgactgttttgtctaattgattca |
29758991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1530652 - 1530708
Alignment:
| Q |
1 |
tcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaatgaaag |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1530652 |
tcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaatgaaag |
1530708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22476062 - 22476004
Alignment:
| Q |
1 |
tcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaatgaaaggt |
59 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22476062 |
tcatgtacttcaaagataatgccggcgttattgtgaatcctaagggagaaatgaaaggt |
22476004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26849123 - 26849175
Alignment:
| Q |
1 |
tcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaatg |
53 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
26849123 |
tcatgtacttcgaagataatgccggcgttattgtgaatcctaagggagaaatg |
26849175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University