View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8250_low_2 (Length: 783)

Name: NF8250_low_2
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8250_low_2
NF8250_low_2
[»] chr3 (9 HSPs)
chr3 (204-465)||(9334321-9334585)
chr3 (535-716)||(9334007-9334189)
chr3 (19-162)||(9334584-9334724)
chr3 (532-716)||(9328708-9328874)
chr3 (713-767)||(9333525-9333579)
chr3 (218-274)||(9329118-9329174)
chr3 (81-153)||(9329172-9329241)
chr3 (374-454)||(9328989-9329068)
chr3 (230-309)||(9580227-9580306)
[»] chr7 (2 HSPs)
chr7 (160-287)||(451271-451398)
chr7 (205-250)||(3680059-3680104)
[»] scaffold0400 (1 HSPs)
scaffold0400 (175-250)||(15383-15458)
[»] scaffold0365 (1 HSPs)
scaffold0365 (175-250)||(16026-16101)
[»] chr1 (2 HSPs)
chr1 (175-250)||(14493984-14494059)
chr1 (164-271)||(4432648-4432755)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 204 - 465
Target Start/End: Complemental strand, 9334585 - 9334321
Alignment:
Q  204 tatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacacc 303  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334585 tatgatttattaagatttggatattctcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacacc 9334486  T
Q  304 attgggtttacgcacaaaacttggcgatatggaaatttaatctcttattattatatcctgacagcatgacggtgaaactggcaaaagtgttatatttcca 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9334485 attgggtttacgcacaaaacttggcgatatggaaatttaatctcttattattatatcctgacagcatgacggtgaaactggcaaaattgttatatttcca 9334386  T
Q  404 agaagacttgtattttgtttcaattctcagtatac---tactcatgtttgatatattgaaaatag 465  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  9334385 agaagacttgtattttgtttcaattctcagtatactactactcatgtttgatatattgaaaatag 9334321  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 535 - 716
Target Start/End: Complemental strand, 9334189 - 9334007
Alignment:
Q  535 cttttgttagtgctgttgttattttcttattattactgtcattacttttctttt------gttcttagaatattccaataaagatggtgagcatgaggtt 628  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||||||||||||| ||||||||||||||    
T  9334189 cttttgttagtgctgttgttattttcttattattactgtcatcacttttctttttcttttgttcttagaatattccaataaagatagtgagcatgaggtt 9334090  T
Q  629 tggcaagttcgtgcaatcaccattctgttagaacccttgtggtaggcagtagagagaatagttttctctcaactgaggagcttaggct 716  Q
    |||||||||| | |||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334089 tggcaagttcatacaatcaccattctgttagaac-----aggtaggcagtagagagaatagttttctctcaactgaggagcttaggct 9334007  T

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Target: chr3; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 9334724 - 9334584
Alignment:
Q  19 ttatctgtcctctttgtttgtcgtttactttgattaggttttgatagttcatcctttattacatctattttgaagttttcttcattgtgcataaatcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334724 ttatctgtcctctttgtttgtcgtttactttgattaggttttgatagttcatcctttattacatctattttgaagttttcttcattgtgcataaatcata 9334625  T
Q  119 tactacttattacttggtatgtaattctcactattagatatata 162  Q
       ||| ||||||||||| |||||||||||||||||||||||||    
T  9334624 ---tacgtattacttggtgtgtaattctcactattagatatata 9334584  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 532 - 716
Target Start/End: Complemental strand, 9328874 - 9328708
Alignment:
Q  532 tggcttttgttagtgctgttgttattttcttattattactgtcattacttttcttttgttcttagaatattccaataaagatggtgagcatgaggtttgg 631  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||        ||||| ||||||||||| |||||    
T  9328874 tggcttttgttattgctgctgttattttcttattattactgtcatcactcttcttttgttcttagaata--------aagatagtgagcatgagatttgg 9328783  T
Q  632 caagttcgtgcaatcaccattctgttagaacccttgtggtaggcagtagagagaatagttttctctcaactgaggagcttaggct 716  Q
    |||          ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  9328782 caa----------tcaacattctgttagaacacttgtggtaggcagtagagagaatagttttctctcaaaagaggatcttaggct 9328708  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 713 - 767
Target Start/End: Complemental strand, 9333579 - 9333525
Alignment:
Q  713 ggcttgactcatgtgagagtgcaggttcttacattcactcttcatgattttgatg 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9333579 ggcttgactcatgtgagagtgcaggttcttacattcactcttcatgattttgatg 9333525  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 9329174 - 9329118
Alignment:
Q  218 atttggatcttctcatttagttcttaacagaaacttttgtcactttatacaggggcg 274  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9329174 atttggatcttctcatttagttcttaacagaaacttttgccactttatacaggggcg 9329118  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 9329241 - 9329172
Alignment:
Q  81 atctattttgaagttttcttcattgtgcataaatcatatactacttattacttggtatgtaattctcactatt 153  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||| ||||| ||||||||||||||||    
T  9329241 atctattttgaagttttcttcattgtgcataaatcata---tacttattatttggtgtgtaattctcactatt 9329172  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 9329068 - 9328989
Alignment:
Q  374 ggtgaaactggcaaaagtgttatatttccaagaagacttgt-attttgtttcaattctcagtatactactcatgtttgatat 454  Q
    ||||||| |||||||||| |||| ||||||| ||||||||| |||||||||||||||| |  ||||||||||||||||||||    
T  9329068 ggtgaaattggcaaaagttttatttttccaacaagacttgttattttgtttcaattctga--atactactcatgtttgatat 9328989  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 9580227 - 9580306
Alignment:
Q  230 tcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacaccattggg 309  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||| | ||||||||| ||  ||||||||  |||||||    
T  9580227 tcatatagtttttaacagaaacttttgtcactttatacaggagcgacgaaaagaaagaggacgtgagacacgacattggg 9580306  T

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Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 451271 - 451398
Alignment:
Q  160 atagaaaatgaatttatcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtca 259  Q
    ||||||||| ||||||||| |||||||||||||||||||  ||  || |||||||| |||||| ||||||||||||||||| | ||| ||  |||||||     
T  451271 atagaaaatcaatttatcaatttacttttataaattttccatgacattatttattaggatttgaatcttctcatttagttcctgacacaattttttgtct 451370  T
Q  260 ctttatacaggggcgagggaaagaaaga 287  Q
    ||||||| |||  | || ||||||||||    
T  451371 ctttatataggacctagagaaagaaaga 451398  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 3680059 - 3680104
Alignment:
Q  205 atgatttattaagatttggatcttctcatttagttcttaacagaaa 250  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||    
T  3680059 atgatttactaagatttggatcttctcatttagttcctaacagaaa 3680104  T

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Target: scaffold0400 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 15458 - 15383
Alignment:
Q  175 atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa 250  Q
    |||| ||||||||||||||||||   |   || |||||||| ||||||||||||||||||||||||||||||||||    
T  15458 atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa 15383  T

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Target: scaffold0365 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 16101 - 16026
Alignment:
Q  175 atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa 250  Q
    |||| ||||||||||||||||||   |   || |||||||| ||||||||||||||||||||||||||||||||||    
T  16101 atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa 16026  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 14493984 - 14494059
Alignment:
Q  175 atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa 250  Q
    |||| ||||||||||||||||||   |   || |||||||| ||||||||||||||||||||||||||||||||||    
T  14493984 atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa 14494059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 4432755 - 4432648
Alignment:
Q  164 aaaatgaatttatcattttacttttataaatttt-ctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtcactt 262  Q
    ||||| ||||||||| |||||  ||||||||||| ||| | ||| |||||||| |||||||||||||||||||||||| ||||| ||   ||||| ||||    
T  4432755 aaaatcaatttatcaatttacggttataaattttgctc-gatattatttattaggatttggatcttctcatttagttcctaacaaaatgctttgttactt 4432657  T
Q  263 tatacaggg 271  Q
    | |||||||    
T  4432656 tttacaggg 4432648  T

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