View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8250_low_20 (Length: 354)
Name: NF8250_low_20
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 31641477 - 31641140
Alignment:
| Q |
1 |
tcagctcagcattggccagtttggatcagtgactcagctagactcagttgatcactacattaacaacatgagaggctgtctcaccggaaagaacgacgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31641477 |
tcagctcagcattggccagtttggatcagtgactcagctagactcagttgatcactacattaacaacatgagaggctgtctcaccggaaagaacgacgat |
31641378 |
T |
|
| Q |
101 |
ggtctcactagggactttcttggccttaccaacggtggaggaaatggtggtgactccttggatgtaaaggatatgctaacattcacggggggtgtagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31641377 |
ggtctcactagggactttcttggccttaccaacggtggaggaaatggtggtgactccttggatgtaaaggatatgctaacattcacggggggtgtagaat |
31641278 |
T |
|
| Q |
201 |
accaccaacaccaacctcatcaaaacatgatgatgctcaagtcacagtcacaacaagcaggttttggttttcttgggacaacaactgttcctgagtcgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31641277 |
accaccaacaccaacctcatcaaaacatgatgatgctcaagtcacagtcacaacaagcaggttttggttttcttgggacaacaactgttcctgagtcgtg |
31641178 |
T |
|
| Q |
301 |
ggggaactgttagagaccaaaattaccatgggtatatt |
338 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31641177 |
ggggaactgttagacaccaaaattaccatgggtatatt |
31641140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University