View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8250_low_21 (Length: 338)

Name: NF8250_low_21
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8250_low_21
NF8250_low_21
[»] chr1 (7 HSPs)
chr1 (247-321)||(25303123-25303197)
chr1 (8-58)||(25302955-25303005)
chr1 (39-103)||(25299737-25299801)
chr1 (265-321)||(25300051-25300107)
chr1 (171-215)||(25303091-25303135)
chr1 (209-238)||(20014568-20014597)
chr1 (210-238)||(14498072-14498100)
[»] chr8 (7 HSPs)
chr8 (209-238)||(11404111-11404140)
chr8 (209-238)||(19723421-19723450)
chr8 (209-238)||(27879553-27879582)
chr8 (209-238)||(28019734-28019763)
chr8 (209-238)||(29767296-29767325)
chr8 (209-238)||(41553395-41553424)
chr8 (209-237)||(11610390-11610418)
[»] chr7 (4 HSPs)
chr7 (209-238)||(245257-245286)
chr7 (209-238)||(21577091-21577120)
chr7 (209-238)||(35109801-35109830)
chr7 (209-238)||(45278562-45278591)
[»] chr6 (2 HSPs)
chr6 (209-238)||(2711733-2711762)
chr6 (209-238)||(35163743-35163772)
[»] chr5 (1 HSPs)
chr5 (209-238)||(17064433-17064462)
[»] chr4 (3 HSPs)
chr4 (209-238)||(2570311-2570340)
chr4 (209-238)||(51713958-51713987)
chr4 (209-238)||(55231797-55231826)
[»] chr3 (3 HSPs)
chr3 (209-238)||(25910659-25910688)
chr3 (209-238)||(50823808-50823837)
chr3 (209-238)||(50852023-50852052)
[»] chr2 (9 HSPs)
chr2 (209-238)||(558432-558461)
chr2 (209-238)||(2357069-2357098)
chr2 (209-238)||(2754044-2754073)
chr2 (209-238)||(10745225-10745254)
chr2 (209-238)||(17136497-17136526)
chr2 (209-238)||(21638007-21638036)
chr2 (209-238)||(25987654-25987683)
chr2 (209-238)||(26690264-26690293)
chr2 (209-238)||(36380125-36380154)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 25303123 - 25303197
Alignment:
Q  247 tcagtgaccatcctcgttggaatttctcaccggtcggcaaatcggtcccaccgacgtcttaaaccctataattac 321  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25303123 tcagtgtccatcctcatcggaatttctcaccggtcggcaaatcggtcccaccgacgtcttaaaccctataattac 25303197  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 25302955 - 25303005
Alignment:
Q  8 tcaacgcagttacagcagcaaatccaattccgtctactatggatatggtat 58  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  25302955 tcaacgcaattacagcaacaaatccaattccgtctactatggatatggtat 25303005  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 25299737 - 25299801
Alignment:
Q  39 gtctactatggatatggtataccttcctttgcttattgtatatcataccatagacgagcattccc 103  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||||   ||||||| |||||||    
T  25299737 gtctactatggatatggtatatctttctttgcttattgtataccatattgtagacgatcattccc 25299801  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 25300051 - 25300107
Alignment:
Q  265 ggaatttctcaccggtcggcaaatcggtcccaccgacgtcttaaaccctataattac 321  Q
    |||||| ||||| |||||| |||| |||||  |||||||||||||||||||||||||    
T  25300051 ggaattcctcacaggtcggaaaattggtcctgccgacgtcttaaaccctataattac 25300107  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 25303091 - 25303135
Alignment:
Q  171 ttcaatagataaaagaaacaccaccccacaaatcagtgaccatcc 215  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||    
T  25303091 ttcaatagataaaagaaacatcaccccgcaaatcagtgtccatcc 25303135  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 20014568 - 20014597
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  20014568 accatcccctcaccctaaaatttttgtaac 20014597  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 14498100 - 14498072
Alignment:
Q  210 ccatcccctcaccctaaaatttttgtaac 238  Q
    |||||||||||||||||||||||||||||    
T  14498100 ccatcccctcaccctaaaatttttgtaac 14498072  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 11404111 - 11404140
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  11404111 accatcccctcaccctaaaatttttgtaac 11404140  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 19723421 - 19723450
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  19723421 accatcccctcaccctaaaatttttgtaac 19723450  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 27879582 - 27879553
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  27879582 accatcccctcaccctaaaatttttgtaac 27879553  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 28019763 - 28019734
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  28019763 accatcccctcaccctaaaatttttgtaac 28019734  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 29767296 - 29767325
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  29767296 accatcccctcaccctaaaatttttgtaac 29767325  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 41553395 - 41553424
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  41553395 accatcccctcaccctaaaatttttgtaac 41553424  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 11610390 - 11610418
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaa 237  Q
    |||||||||||||||||||||||||||||    
T  11610390 accatcccctcaccctaaaatttttgtaa 11610418  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 245286 - 245257
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  245286 accatcccctcaccctaaaatttttgtaac 245257  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 21577120 - 21577091
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  21577120 accatcccctcaccctaaaatttttgtaac 21577091  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 35109801 - 35109830
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  35109801 accatcccctcaccctaaaatttttgtaac 35109830  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 45278562 - 45278591
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  45278562 accatcccctcaccctaaaatttttgtaac 45278591  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 2711762 - 2711733
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  2711762 accatcccctcaccctaaaatttttgtaac 2711733  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 35163772 - 35163743
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  35163772 accatcccctcaccctaaaatttttgtaac 35163743  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 17064433 - 17064462
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  17064433 accatcccctcaccctaaaatttttgtaac 17064462  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 2570311 - 2570340
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  2570311 accatcccctcaccctaaaatttttgtaac 2570340  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 51713987 - 51713958
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  51713987 accatcccctcaccctaaaatttttgtaac 51713958  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 55231797 - 55231826
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  55231797 accatcccctcaccctaaaatttttgtaac 55231826  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 25910688 - 25910659
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  25910688 accatcccctcaccctaaaatttttgtaac 25910659  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 50823808 - 50823837
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  50823808 accatcccctcaccctaaaatttttgtaac 50823837  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 50852052 - 50852023
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  50852052 accatcccctcaccctaaaatttttgtaac 50852023  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 558461 - 558432
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  558461 accatcccctcaccctaaaatttttgtaac 558432  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 2357098 - 2357069
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  2357098 accatcccctcaccctaaaatttttgtaac 2357069  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 2754073 - 2754044
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  2754073 accatcccctcaccctaaaatttttgtaac 2754044  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 10745254 - 10745225
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  10745254 accatcccctcaccctaaaatttttgtaac 10745225  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 17136497 - 17136526
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  17136497 accatcccctcaccctaaaatttttgtaac 17136526  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 21638007 - 21638036
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  21638007 accatcccctcaccctaaaatttttgtaac 21638036  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 25987683 - 25987654
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  25987683 accatcccctcaccctaaaatttttgtaac 25987654  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 26690264 - 26690293
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  26690264 accatcccctcaccctaaaatttttgtaac 26690293  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 36380154 - 36380125
Alignment:
Q  209 accatcccctcaccctaaaatttttgtaac 238  Q
    ||||||||||||||||||||||||||||||    
T  36380154 accatcccctcaccctaaaatttttgtaac 36380125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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