View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_25 (Length: 302)
Name: NF8250_low_25
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 30274778 - 30274508
Alignment:
| Q |
18 |
ctttttggcacaccaacggttagccatagttgatcctgcttctggggatcaacctctctttaatgaagacaaatctgtcattgtcacggtaggccattta |
117 |
Q |
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| T |
30274778 |
ctttttggcacaccaacggttagccatagttgatcctgcttctggggatcaacctctctttaatgaagacaaatctgtcattgtcacggtaggccattta |
30274679 |
T |
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| Q |
118 |
tatgacatatgctaaatcaattacaacacatgtagcatcgacgttttatattgaaggcgtgagtgtcagacaacaacagtatagatacaacgctaacaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274678 |
tatgacatatgctaaatcaattacaacacatgtagcatcgacgctttatattgaaggcgtgagtgtcagacaacaacagtatagatacaacgctaacaca |
30274579 |
T |
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| Q |
218 |
tgtgataatatgcagtcatttttatgttatcactgatatttacgtgtcagtgtcattgtcgtatctgatgt |
288 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
30274578 |
tgtgataatatgcagtcatttttatgttatcattgatatttacgtgtcagtgtcattgtcgtatctaatgt |
30274508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 25967428 - 25967341
Alignment:
| Q |
21 |
tttggcacaccaacggttagccatagttgatcctgcttctggggatcaacctctctttaatgaagacaaatctgtcattgtcacggta |
108 |
Q |
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|||||| || ||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| | |||||||||||| |
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| T |
25967428 |
tttggctcatcaaaggttagccattgttgatcctgcttctggtgatcaacctctcttcaatgaagataaatcaattattgtcacggta |
25967341 |
T |
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