View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_3 (Length: 675)
Name: NF8250_low_3
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 112 - 661
Target Start/End: Complemental strand, 30275057 - 30274508
Alignment:
| Q |
112 |
ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa |
211 |
Q |
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| T |
30275057 |
ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa |
30274958 |
T |
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| Q |
212 |
aatgtaattttattnnnnnnntatgtggtgacatagtaactttgaaagaatattattgtcctttagtttaatgtgtctgaatatggataattgattgatt |
311 |
Q |
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| T |
30274957 |
aatgtaattttattaaaaaaatatgtggtgacatagtaacattgaaagaatattattgtcctttagtttaatgtgtctgaatatggataattgattgatt |
30274858 |
T |
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| Q |
312 |
attgattatttgtttgttgacgtaacagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggtt |
411 |
Q |
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| T |
30274857 |
attgattatttgtttgttgacgtaacagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggtt |
30274758 |
T |
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| Q |
412 |
agccatagttgatcctgcttctggggatcaacctctctttaatgaagacaaatctgtcattgtcacggtaggccatttatatgacatatgctaaatcaat |
511 |
Q |
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| T |
30274757 |
agccatagttgatcctgcttctggggatcaacctctctttaatgaagacaaatctgtcattgtcacggtaggccatttatatgacatatgctaaatcaat |
30274658 |
T |
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| Q |
512 |
tacaacacatgtagcatcgacgttttatattgaaggcgtgagtgtcagacaacaacagtatagatacaacgctaacacatgtgataatatgcagtcattt |
611 |
Q |
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| T |
30274657 |
tacaacacatgtagcatcgacgctttatattgaaggcgtgagtgtcagacaacaacagtatagatacaacgctaacacatgtgataatatgcagtcattt |
30274558 |
T |
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| Q |
612 |
ttatgttatcactgatatttacgtgtcagtgtcattgtcgtatctgatgt |
661 |
Q |
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| T |
30274557 |
ttatgttatcattgatatttacgtgtcagtgtcattgtcgtatctaatgt |
30274508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 30275192 - 30275152
Alignment:
| Q |
19 |
caaaagattaaaaggagttaaataattgtagaactatattc |
59 |
Q |
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| T |
30275192 |
caaaagattaaaaggagttaaataattgtagaactatattc |
30275152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 336 - 481
Target Start/End: Complemental strand, 25967486 - 25967341
Alignment:
| Q |
336 |
acagattgaagcaccgtggccctgattggagtgggctccaccaacatggtgactgctttttggcacaccaacggttagccatagttgatcctgcttctgg |
435 |
Q |
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||||||||||||||||||| || || |||||||||||||||||||||||||| || |||||| || ||| |||||||||| ||||||||||||||||| |
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| T |
25967486 |
acagattgaagcaccgtggtccagactggagtgggctccaccaacatggtgataactatttggctcatcaaaggttagccattgttgatcctgcttctgg |
25967387 |
T |
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| Q |
436 |
ggatcaacctctctttaatgaagacaaatctgtcattgtcacggta |
481 |
Q |
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| T |
25967386 |
tgatcaacctctcttcaatgaagataaatcaattattgtcacggta |
25967341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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