View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8250_low_34 (Length: 243)

Name: NF8250_low_34
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8250_low_34
NF8250_low_34
[»] chr1 (13 HSPs)
chr1 (1-231)||(2020935-2021165)
chr1 (1-231)||(2007798-2008028)
chr1 (118-190)||(3380264-3380336)
chr1 (24-190)||(3217176-3217342)
chr1 (52-190)||(3363972-3364110)
chr1 (76-190)||(3366390-3366504)
chr1 (115-187)||(2947210-2947282)
chr1 (52-190)||(3374072-3374210)
chr1 (115-184)||(3353406-3353475)
chr1 (116-190)||(3342702-3342776)
chr1 (135-184)||(1794138-1794187)
chr1 (94-203)||(4333563-4333672)
chr1 (94-190)||(6599659-6599755)
[»] chr2 (4 HSPs)
chr2 (39-203)||(20936082-20936246)
chr2 (39-190)||(20954323-20954474)
chr2 (118-190)||(20924551-20924623)
chr2 (76-203)||(39275261-39275388)
[»] chr4 (1 HSPs)
chr4 (135-190)||(21238958-21239013)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2020935 - 2021165
Alignment:
Q  1 catgtaggcagtacaggaggagaatactgtcgttttagcacctgccgccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcga 100  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2020935 catgtaggcagcacaggaggagaatacggtcgttttagcacctgcctcctattgttgggaaaatgtctttttggagccatccatacccatccaagtgtga 2021034  T
Q  101 catgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagc 200  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2021035 catgtgtgtattgaaggcatctctggtatgaaagctgaattagattttttgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagc 2021134  T
Q  201 ctgatttgaacggcggatctaagttgatgtc 231  Q
    |||||||||||| ||||||||||||||||||    
T  2021135 ctgatttgaacgtcggatctaagttgatgtc 2021165  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2007798 - 2008028
Alignment:
Q  1 catgtaggcagtacaggaggagaatactgtcgttttagcacctgccgccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcga 100  Q
    ||||||||||  ||| ||| |||| ||| ||||||||||||| |||  |||||| |||||| || ||||| ||||||||||||| | || || |||||||    
T  2007798 catgtaggcaaaacatgagaagaaaactatcgttttagcacccgccttcttttgctgggaagatatctttctggagccatccatgctcacccgagtgcga 2007897  T
Q  101 catgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagc 200  Q
    |||||   |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||    
T  2007898 catgtagggattgaaggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctgtgctagaaaagatgagagtgaagc 2007997  T
Q  201 ctgatttgaacggcggatctaagttgatgtc 231  Q
    |  |||| ||||  ||||| |||||||||||    
T  2007998 ccaattttaacgttggatcgaagttgatgtc 2008028  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 3380264 - 3380336
Alignment:
Q  118 catctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 190  Q
    |||||||||||| ||| | ||||||||||||||  | ||||||||||||||||| ||||||||||||||||||    
T  3380264 catctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgctagaaaagatg 3380336  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 3217342 - 3217176
Alignment:
Q  24 atactgtcgttttagcacctgccgccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctc 123  Q
    |||||| | ||||| |||| ||| ||| ||||||| || ||||||||||||||||| || | ||| ||| |||||| ||||||   ||  |||| |||||    
T  3217342 atactgaccttttaacacccgcctcctattgttggaaagatgtctttttggagccacccgtgcccctccgagtgcgccatgtgagcataaaaggaatctc 3217243  T
Q  124 tggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 190  Q
    ||  |  | | |||||||||||||||| |||||||||||| | ||||| || |||||||||||||||    
T  3217242 tgacaatacatctgaattagattttatcagatttctacttatgtattctcccatgctagaaaagatg 3217176  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 3363972 - 3364110
Alignment:
Q  52 ttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatg 151  Q
    ||||||||||||| | |||| ||||||| | || |||||  ||||||||||||||  |||  | |||||||||||  | ||| ||||||||||||||||     
T  3363972 ttgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattagattttatc 3364071  T
Q  152 agatttctacttctctattcgcctatgctagaaaagatg 190  Q
    |||||||| ||| | ||||| ||| | ||||||||||||    
T  3364072 agatttctgcttttatattctcctgtactagaaaagatg 3364110  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 3366390 - 3366504
Alignment:
Q  76 gccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcct 175  Q
    |||| |||| ||||| | |||||||||||||   || || |||||||||||||| ||| | ||| ||||||||||  | |||||||||| |||||| |||    
T  3366390 gccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagattttattcggtttctacttcgctattctcct 3366489  T
Q  176 atgctagaaaagatg 190  Q
    |||||||| ||||||    
T  3366490 atgctagacaagatg 3366504  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 2947282 - 2947210
Alignment:
Q  115 aggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaag 187  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||  |||| || ||||||||||||    
T  2947282 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaag 2947210  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 3374072 - 3374210
Alignment:
Q  52 ttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatg 151  Q
    |||||||||| || ||||||  | |||| |||| ||||| ||||| | |||||||   || || |||||||||||||| | | | ||||||||||||||     
T  3374072 ttgttgggaagatatcttttcagggccagccatgcccattcaagtacaacatgtgacaatagatggcatctctggtatcagatcagaattagattttatt 3374171  T
Q  152 agatttctacttctctattcgcctatgctagaaaagatg 190  Q
     | ||||||||||  ||||| ||| ||||||||||||||    
T  3374172 cggtttctacttcgatattctcctgtgctagaaaagatg 3374210  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 3353406 - 3353475
Alignment:
Q  115 aggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaa 184  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||  |||| || |||||||||    
T  3353406 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaa 3353475  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 3342702 - 3342776
Alignment:
Q  116 ggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 190  Q
    |||||||||||||  ||| ||||||||||||||||   |||||||||||| ||||| |||   ||||||||||||    
T  3342702 ggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcctgatctagaaaagatg 3342776  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 1794138 - 1794187
Alignment:
Q  135 ctgaattagattttatgagatttctacttctctattcgcctatgctagaa 184  Q
    |||||||||||||||| |||||||||||||| ||||| ||| | ||||||    
T  1794138 ctgaattagattttatcagatttctacttctatattctcctgtcctagaa 1794187  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 4333672 - 4333563
Alignment:
Q  94 agtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatggaa 193  Q
    |||||||||||||  ||| || |||||||||||||   |  |||||||| |||| || |||||||||||||| ||||| |   ||||||||||||||       
T  4333672 agtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaatttgatcagatttctacttctatattctctggtgctagaaaagatgatt 4333573  T
Q  194 gtgaagcctg 203  Q
    ||||||||||    
T  4333572 gtgaagcctg 4333563  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 6599755 - 6599659
Alignment:
Q  94 agtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 190  Q
    |||||||||||||   || || |||||||||||||| ||| |||| ||||| || || || ||| ||||||| ||||| ||| ||||||||| ||||    
T  6599755 agtgcgacatgtgagaatagatggcatctctggtatcaaacctgagttagacttcatcagctttatacttctatattctcctgtgctagaaaggatg 6599659  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 20936082 - 20936246
Alignment:
Q  39 cacctgccgccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 138  Q
    ||||||| |||| ||||||||||||  |||||| || |||| |||| ||||| | |||||||||||||  ||| || ||||||| |||||  |||   ||    
T  20936082 cacctgctgcctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattgga 20936181  T
Q  139 attagattttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctg 203  Q
    |||||||||||| | |||||||||||| ||||| ||| ||||||||||||||   ||||||||||    
T  20936182 attagattttatcaaatttctacttctatattctcctgtgctagaaaagatgactgtgaagcctg 20936246  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 20954323 - 20954474
Alignment:
Q  39 cacctgccgccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 138  Q
    |||||||||||| |||||||||| || | |||| ||  ||| |||| ||||| |||||||||||||||  |||||| ||||||| |||||  ||    ||    
T  20954323 cacctgccgcctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttgga 20954422  T
Q  139 attagattttatgagatttctacttctctattcgcctatgctagaaaagatg 190  Q
    |||||||||||| | |||||||||||| ||||| || |||||||||||||||    
T  20954423 attagattttatcaaatttctacttctatattctcccatgctagaaaagatg 20954474  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 20924551 - 20924623
Alignment:
Q  118 catctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 190  Q
    |||||||||||  ||| |||||||||||||||| |||||||||||||||||||| ||| ||||  ||||||||    
T  20924551 catctctggtaccaaatctgaattagattttatcagatttctacttctctattcacctgtgctcaaaaagatg 20924623  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 39275261 - 39275388
Alignment:
Q  76 gccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcct 175  Q
    |||| |||| ||||||||||| |||||||||   || |  |||||| |||| || ||| |||||||||||||||| | |||||| ||  | ||||| |||    
T  39275261 gccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagattttatcaaatttcttctcatgtattctcct 39275360  T
Q  176 atgctagaaaagatggaagtgaagcctg 203  Q
    ||||||||||| |||   ||||||||||    
T  39275361 atgctagaaaaaatgattgtgaagcctg 39275388  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 21238958 - 21239013
Alignment:
Q  135 ctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 190  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  21238958 ctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatg 21239013  T

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