View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_36 (Length: 242)
Name: NF8250_low_36
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45604715 - 45604474
Alignment:
| Q |
1 |
aggtggtcacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatgg |
100 |
Q |
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| T |
45604715 |
aggtggtcacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatgg |
45604616 |
T |
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| Q |
101 |
aaatggaatcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaagatccacacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45604615 |
aaatggaatcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaagatccacataa |
45604516 |
T |
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| Q |
201 |
ttataagagcatcaccaaagagactcatcaaagcaccttacc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45604515 |
ttataagagcatcaccaaagagactcatcaaagcaccttacc |
45604474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 20069842 - 20069999
Alignment:
| Q |
1 |
aggtggtcacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatgg |
100 |
Q |
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|||||||| ||||| |||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| || | |||| || || |
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| T |
20069842 |
aggtggtctcagattgcacaacaattgccgggaaggaccgacaacgagattaaaaattattggcattcatatctgaaaaagaaagaagtcaaaagtaagg |
20069941 |
T |
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| Q |
101 |
aaatggaatcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactc |
158 |
Q |
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| T |
20069942 |
atattgaatctcatactcaaattcaatatgctagttcaagctcagatacaatgaactc |
20069999 |
T |
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