View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_37 (Length: 241)
Name: NF8250_low_37
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 5175038 - 5174828
Alignment:
| Q |
19 |
gtctaaggtcattttttgcttagcttggactattgaaatttactaactgctagtgactacatctattatctttttgtttttaactcattattgccatttt |
118 |
Q |
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| T |
5175038 |
gtctaaggtcattttttgctt-----ggactattgaaatttactaactgctagtgactacatctattatctttttgtttttaactcattattgccatttt |
5174944 |
T |
|
| Q |
119 |
tattgtcaataataatgattactactgtgttgcctaaggtaatgtttagagtaagacaaggggagggatttaagtatatatttttaactcctatggctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174943 |
tattgtcaataataatgattactactgtgttgcctaaggtaatgtttagagtaagacaaggggagggatttaagtatatatttttaactcctatggctat |
5174844 |
T |
|
| Q |
219 |
gtttctcctaccatca |
234 |
Q |
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|||||||||||||||| |
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| T |
5174843 |
gtttctcctaccatca |
5174828 |
T |
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