View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8250_low_40 (Length: 226)
Name: NF8250_low_40
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_40 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 24777247 - 24777461
Alignment:
| Q |
1 |
tggtatatggcacaatattagtggtttaaccattgggaattagtttaaaaatttaacaaaattgttgagtgatggccacctggtagagcataaacattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24777247 |
tggtatatggcacaatattagtggtttaaccattgggaattagtttaaaaatttaacaaaattgttgagtgatggccacctggtagagcataaacattaa |
24777346 |
T |
|
| Q |
101 |
agtaaattaatttcatgaaaaagtttggaaagtgcagcatagttaatatgatttggtagaaaagcaacaattaatgttattgttagctacctcacatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24777347 |
agtaaattaatttcatgaaaaagtttggaaagtgcagcatagttaatatgatttggtagaaaagcaacaattaatgttattgttagctaggtcacatgaa |
24777446 |
T |
|
| Q |
201 |
tcacatcatcaacac |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24777447 |
tcacatcatcaacac |
24777461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University