View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_43 (Length: 211)
Name: NF8250_low_43
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 31565556 - 31565454
Alignment:
| Q |
18 |
taatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattc |
117 |
Q |
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| T |
31565556 |
taatcaaagagtggctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattc |
31565457 |
T |
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| Q |
118 |
aga |
120 |
Q |
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||| |
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| T |
31565456 |
aga |
31565454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 33413915 - 33414021
Alignment:
| Q |
17 |
ataatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaatt |
116 |
Q |
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|||| ||||||||| ||||| | || |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
33413915 |
ataagcaaagagtgcctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaacaatt |
33414014 |
T |
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| Q |
117 |
cagacct |
123 |
Q |
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|| |||| |
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| T |
33414015 |
caaacct |
33414021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 33351038 - 33351120
Alignment:
| Q |
41 |
aatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
123 |
Q |
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| T |
33351038 |
aatagatcaatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct |
33351120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 33414090 - 33414169
Alignment:
| Q |
113 |
aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga |
192 |
Q |
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| T |
33414090 |
aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatga |
33414169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 31565451 - 31565420
Alignment:
| Q |
162 |
ttggcgtctaatcaacatttggttattatgat |
193 |
Q |
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| T |
31565451 |
ttggcgtctaatcaacatttggttattatgat |
31565420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 33351212 - 33351261
Alignment:
| Q |
143 |
tacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga |
192 |
Q |
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|||| ||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
33351212 |
tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatga |
33351261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 17446233 - 17446159
Alignment:
| Q |
49 |
aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
123 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| |||| |
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| T |
17446233 |
aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct |
17446159 |
T |
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