View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8250_low_6 (Length: 553)
Name: NF8250_low_6
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 22 - 538
Target Start/End: Complemental strand, 33071892 - 33071376
Alignment:
| Q |
22 |
aagctatactcgtgattcacaagtaagttttgtcgaattattattgataattattttagtttaaagaaacaattccgaatatattgatatgaatgtttgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33071892 |
aagctatactcgtgattcacaagtaagttttgtcgaattattattgataattattttagtttaaagaaacaattccgaatatattgatatgaatgtttgt |
33071793 |
T |
|
| Q |
122 |
gatattgtttggaatttcagtgtaaattataatggtatttaataacattcttttttgttgtatatatgtgaattttctttgcactttcagaacaaattat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33071792 |
gatattgtttggaatttcagtgtaaattataatggtatttaataacattcttttttgttgtatatatgtgaattttctttgcactttcggaacaaattat |
33071693 |
T |
|
| Q |
222 |
aacacaatatacatgaaaattactcatgactaaaagtcaagcggacactaagtgataaactacttacatctaatgtacatgacaatcatattcaattctt |
321 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33071692 |
aacgtaatatacatgaaaattatacatgactgaaagtcaagcggacactaagtgataaactacttacatctaatgtacatgacaatcatattcaattctt |
33071593 |
T |
|
| Q |
322 |
tattttaaaaaatgtatcgtatctatatggatgtccaaataatatttttctataaaaatttgcattgatgaccacaacaaaacactcttgtatttttcta |
421 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33071592 |
tcttttaaaaaatgtatcgtatctatatggatgtccaaataatatttttctataaaaatttgcattgatgaccacaacaaaacactcttgtatttttcta |
33071493 |
T |
|
| Q |
422 |
taaataacaacctcattccttccatttgtatatcaatcaaactaaaacaaaccatttcaattttaatcatactcacaaggttgttatttcttttctttct |
521 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33071492 |
taaataacaacctcattctatccatttgtatatcaatcaaacaaaaacaaaccatttcaattttaatcatattcacaaggttgttatttcttttctttct |
33071393 |
T |
|
| Q |
522 |
cattagtcttgatgtcc |
538 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
33071392 |
cattagtcttgttgtcc |
33071376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 31440939 - 31440997
Alignment:
| Q |
70 |
aattattttagtttaaagaaacaattccgaatatattgatatgaatgtttgtgatattg |
128 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
31440939 |
aattattgtagtttaaagaaacaatacagaatatattgatatgaatgtttgttatattg |
31440997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 1277638 - 1277696
Alignment:
| Q |
70 |
aattattttagtttaaagaaacaattccgaatatattgatatgaatgtttgtgatattg |
128 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
1277638 |
aattactttagtttaaagaaacattatggaatatattgatatgaatgtttgttatattg |
1277696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University