View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_7 (Length: 498)
Name: NF8250_low_7
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 231 - 482
Target Start/End: Complemental strand, 962781 - 962530
Alignment:
| Q |
231 |
cagttatgagtataataagataagatatagtaattaccagcataacatgtaattgaaagtgacgaattctgcatataggatcacccaataggtcagtaac |
330 |
Q |
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| T |
962781 |
cagttatgagtataataagataagatatagtaattaccagcataacatgtaattgaaagtgacgaattctacatataggatcacccaataggtcagtaac |
962682 |
T |
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| Q |
331 |
aagagaaggttttcctctttgtccaacctcacaaagcctctccaatttttctactcccactttgtgtttctcttcatcataacttcttatctctatcact |
430 |
Q |
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| T |
962681 |
aagagaaggttttcctctttgtccaacctcacaaagcctctccaatttttctactcccactttgtgtttctcttcatcataacttcttatcactatcact |
962582 |
T |
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| Q |
431 |
gcctcttcaaccttctttgatgatggtttttgccaattttcggctgctatct |
482 |
Q |
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| T |
962581 |
gcctcttcaaccttctttgatgatggtttttgccaattttcagctgctatct |
962530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 963010 - 962816
Alignment:
| Q |
1 |
gtgtgtcaactcttagtctacacatttatatgttaatataatcnnnnnnnngttatatgattcaacttcaagataatgtgtcaacgagatattagctcgc |
100 |
Q |
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| T |
963010 |
gtgtgtcaactcttagtctacacatttatatgttaatataatcttttttt-gttatatgattcaacttcaagataatgtgtctatgagatattagctcgc |
962912 |
T |
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| Q |
101 |
agtaagnnnnnnnnttcaaatatcttcgaggatagttgtaaaatagtcattactgtcactttattttataataatttctccttctcgatcaacttt |
196 |
Q |
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| T |
962911 |
agtaagaaaaaaaattcaaatctcttcgaggatagttgtaaaatagtcattactgtcactttattttataataatttctccttctcgatcaacttt |
962816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 48727580 - 48727624
Alignment:
| Q |
135 |
gttgtaaaatagtcattactgtcactttattttataataatttct |
179 |
Q |
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| T |
48727580 |
gttgtaaaatagtcattaatgtcactttagttcataataatttct |
48727624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 33998763 - 33998717
Alignment:
| Q |
134 |
agttgtaaaatagtcattactgtcactttattttataataatttctc |
180 |
Q |
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| T |
33998763 |
agttgtaaaatagtcattaatgtcactttaattaatagtaatttctc |
33998717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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