View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_8 (Length: 492)
Name: NF8250_low_8
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 42930055 - 42929751
Alignment:
| Q |
19 |
atctctcagcgcaaagaaccaaatacgtaagcaaaagagggaaattaacatgaaaaataatgaaacaaaaaatgttactttatgatacactactactaat |
118 |
Q |
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| T |
42930055 |
atctgtcagcgcaaagaaccaaatacgtaagcaaaagagggaaattaacatgaaaaataatgaaacaaaaaatgttactttatgatacactactactact |
42929956 |
T |
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| Q |
119 |
atttggtatacataattaaaatcattcccctcaaccttaaattaagtacttgaagacgaagatgaagttgaagcttgagtttgtgaagcttcaacttcat |
218 |
Q |
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| T |
42929955 |
atttggtatacataattaaaatcattcccctcaaccttaaattaagtacttgaagacgaagatgaagttgaagcttgagtttgtgaagcttcaacttcat |
42929856 |
T |
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| Q |
219 |
cttcacaatcaatctcctccctaacttgttctaacaacaaagaagaactaggagtatcaacctcttcctcgcgagcttccgaacaagaaacacaacgagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929855 |
cttcacaatcaatctcctccctaacttgttctaacaacaaagaagaactaggagtatcaacctcttcctcgcgagcttccgaacaagaaacacaacgagt |
42929756 |
T |
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| Q |
319 |
gctat |
323 |
Q |
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||||| |
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| T |
42929755 |
gctat |
42929751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 42929654 - 42929601
Alignment:
| Q |
420 |
caaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgat |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929654 |
caaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgat |
42929601 |
T |
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