View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8250_low_9 (Length: 492)
Name: NF8250_low_9
Description: NF8250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8250_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Original strand, 24884535 - 24884997
Alignment:
| Q |
13 |
atggacatcaatctaaaactagtttacactgtcagtgcatatctttctttctctactcggagaaggattcatatgagtaaaatttgaaatattcataatc |
112 |
Q |
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| T |
24884535 |
atggacatcaatctaaaactagtttacactgtcagtgcatatctttctttctctactcggagaaggattcatatgagtaaaatttgaaatattcataatc |
24884634 |
T |
|
| Q |
113 |
ttatcgtcctatttcacagcacctttcacagtcagctacaaatttggtggtttaattactatacactgatcgtgtaaagttattttacacatgataacgt |
212 |
Q |
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| T |
24884635 |
ttatcgtcctatttcacagcacctttcacagtcagctacaaatttggtggtttaattactatacactgatggtgtaaagttattttacacatgataacgt |
24884734 |
T |
|
| Q |
213 |
tgtcatgtcaattaatgaatacgacaacagacaattgtgtattcgtattcagtaattgatctggcaatacattattgaattcaaagggaaaagaggagga |
312 |
Q |
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| T |
24884735 |
tgtcatgtcaattaatgaatacgacaacagacaattgtgtattcgtattcagtaattgatctggcaatacattattgaattcaaagggaaaagaggagga |
24884834 |
T |
|
| Q |
313 |
acctcacctttgaaacatcaaattcaagatcaacgagtcgattctcagagccaccaaaatctttacaccttccatcatcaaccttaaccaacctcgcttt |
412 |
Q |
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| T |
24884835 |
acctcacctttgaaacatcaaattcaagatcaacgagtcgattctcagagccaccaaaatctttacaccttccatcatcaaccttaaccaacctcgcttt |
24884934 |
T |
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| Q |
413 |
ctccgaaaccttcacaacagaagaatccaaatccttcctaagcaaactcccacccataataat |
475 |
Q |
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| T |
24884935 |
ctccgaaaccttcacaacagaagaatccaaatccttcctaagcaaactcccacccataataat |
24884997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 40957097 - 40957137
Alignment:
| Q |
164 |
ttaattactatacactgatcgtgtaaagttattttacacat |
204 |
Q |
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| T |
40957097 |
ttaattactatacacttacggtgtaaagttattttacacat |
40957137 |
T |
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