View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_high_10 (Length: 550)

Name: NF8251_high_10
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_high_10
NF8251_high_10
[»] chr4 (4 HSPs)
chr4 (19-407)||(53086126-53086514)
chr4 (407-537)||(33369908-33370038)
chr4 (406-511)||(33370820-33370925)
chr4 (70-130)||(32315736-32315796)
[»] chr5 (4 HSPs)
chr5 (73-271)||(12095099-12095297)
chr5 (407-537)||(32943516-32943646)
chr5 (408-511)||(32944429-32944532)
chr5 (52-123)||(22393560-22393631)
[»] chr7 (4 HSPs)
chr7 (415-537)||(32547710-32547832)
chr7 (408-525)||(32548604-32548721)
chr7 (74-130)||(3697314-3697370)
chr7 (53-131)||(35457342-35457422)
[»] chr2 (4 HSPs)
chr2 (52-149)||(18480089-18480186)
chr2 (52-122)||(32504903-32504973)
chr2 (70-128)||(40873545-40873603)
chr2 (52-131)||(44207491-44207570)
[»] chr6 (4 HSPs)
chr6 (35-168)||(9645584-9645717)
chr6 (35-168)||(9651601-9651734)
chr6 (335-403)||(4608846-4608915)
chr6 (70-171)||(4608593-4608694)
[»] chr1 (2 HSPs)
chr1 (70-130)||(15368669-15368729)
chr1 (52-179)||(42377932-42378059)
[»] chr3 (1 HSPs)
chr3 (70-130)||(43088782-43088842)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 53086126 - 53086514
Alignment:
Q  19 ctatgttgcttttatcataagagaatagccggaaaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaa 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  53086126 ctatgttgcttttatcataaaagaatagccggaaaataaatttatagtaacaataagataattaacaaattgtcgaattcaacattataattaatagtaa 53086225  T
Q  119 aataaggcaaatcagtcattataaaacaaatatgcaacataaaagaaatccaaaaagaaatccaagtataaataattgttatccattataattagttgcc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53086226 aataaggcaaatcagtcattataaaacaaatatgcaacataaaataaatccaaaaagaaatccaagtataaatgattgttatccattataattagttgcc 53086325  T
Q  219 tacaagaactttgatgaaagcacaattagcaatgaatttaatctataaaacaaggagcttgaattggctttgacctttcttcaaggaatatttatgtaca 318  Q
    ||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53086326 tacaataactttactgaaagcacaattagcaatgaatttaatcgataaaacaaggagcttgaattggctttgacctttcttcaaggaatatttatgtaca 53086425  T
Q  319 agataacgctcaagtaatacatggagagatgcattgtgatttgtcggttatggatgagaaaaatataggcaagtattggatcaaagaaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53086426 agataacgctcaagtaatacatggagagatgcattgtgatttgtcggttatggatgagaaaaatataggcaagtattggatcaaagaaa 53086514  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 407 - 537
Target Start/End: Original strand, 33369908 - 33370038
Alignment:
Q  407 aggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactaga 506  Q
    |||||||||||||||||| ||| ||| ||||||| | | ||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  33369908 aggtgggatttagcatgggaaatgatatttgtttcccaccatgggaaagttaatgttagccattagatcaggtagagaactatacaccctcaacactaga 33370007  T
Q  507 ttattttgtcaccatcttctaccttcatctc 537  Q
    ||||||||| ||||||||| |||||||||||    
T  33370008 ttattttgtaaccatcttccaccttcatctc 33370038  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 406 - 511
Target Start/End: Complemental strand, 33370925 - 33370820
Alignment:
Q  406 aaggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactag 505  Q
    |||||||| |||||||||| |||||||  |||||| | | ||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  33370925 aaggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaattatacaccctcaacactag 33370826  T
Q  506 attatt 511  Q
    ||||||    
T  33370825 attatt 33370820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 32315796 - 32315736
Alignment:
Q  70 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaat 130  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  32315796 aacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggcaaat 32315736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 73 - 271
Target Start/End: Complemental strand, 12095297 - 12095099
Alignment:
Q  73 aagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagtcattataaaacaaatatgcaacataaaagaaatccaaa 172  Q
    |||||| |||| ||||| | ||||||||||||||||||||||| |||||||||||||||   || |||||||||||| |||||||||||| ||| |||||    
T  12095297 aagatagttaacaaattctcgaattcaacattataattaatagaaaaataaggcaaatccaccaatataaaacaaatctgcaacataaaataaacccaaa 12095198  T
Q  173 aagaaatccaagtataaataattgttatccattataattagttgcctacaagaactttgatgaaagcacaattagcaatgaatttaatctataaaacaa 271  Q
    |||||||| ||| |||||||| |||||||||||||||||   ||||||||| ||||||||||||| ||||||||  |||||| |||||| |||||||||    
T  12095197 aagaaatcaaagaataaataactgttatccattataatttactgcctacaataactttgatgaaaacacaattattaatgaagttaatcaataaaacaa 12095099  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 407 - 537
Target Start/End: Original strand, 32943516 - 32943646
Alignment:
Q  407 aggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactaga 506  Q
    |||||||||||||||||| ||||||| ||||||| | | ||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  32943516 aggtgggatttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatcaggtagagaactatacaccctcaacactaga 32943615  T
Q  507 ttattttgtcaccatcttctaccttcatctc 537  Q
    ||||||||| ||||||||| |||||||||||    
T  32943616 ttattttgtaaccatcttccaccttcatctc 32943646  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 408 - 511
Target Start/End: Complemental strand, 32944532 - 32944429
Alignment:
Q  408 ggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactagat 507  Q
    |||||| |||||||||| ||| |||  |||||| | | ||| | ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  32944532 ggtggggtttagcatgggaaatgatacttgtttcccaccatggaaaagttaatgttagccattagattaagtagagaactatacaccctcaacactagat 32944433  T
Q  508 tatt 511  Q
    ||||    
T  32944432 tatt 32944429  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 22393560 - 22393631
Alignment:
Q  52 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataa 123  Q
    |||||||||| | |||| ||||||||||||||||| |||| ||| ||||||| ||| ||||||  |||||||    
T  22393560 aaataaatttgtcgtaaaaacaagataattaataagttgtcgaactcaacatcatacttaataacaaaataa 22393631  T

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Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 415 - 537
Target Start/End: Original strand, 32547710 - 32547832
Alignment:
Q  415 tttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactagattattttg 514  Q
    |||||||||| |||||||  |||||||| | ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||    
T  32547710 tttagcatgggaaaggattcttgttttccaccataggaaagttaatgttagccattagatcaaatagagaactatagaccctcaacactagattattttg 32547809  T
Q  515 tcaccatcttctaccttcatctc 537  Q
    ||| ||||||| |||||||||||    
T  32547810 tcatcatcttccaccttcatctc 32547832  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 408 - 525
Target Start/End: Complemental strand, 32548721 - 32548604
Alignment:
Q  408 ggtgggatttagcatggaaaaggatgtttgttttctatcataggaaagttaatgttagctattagatcaagtagagaactatataccctcaacactagat 507  Q
    |||||| ||||| |||| ||| |||  |||||| | | ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||    
T  32548721 ggtggggtttagtatgggaaatgatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaactatacaccctcaacattatat 32548622  T
Q  508 tattttgtcaccatcttc 525  Q
    ||||||||||| ||||||    
T  32548621 tattttgtcactatcttc 32548604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 3697314 - 3697370
Alignment:
Q  74 agataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaat 130  Q
    |||||||||  ||||||||||||||||||| |||| |||||| ||||||||||||||    
T  3697314 agataattatcaaattgttgaattcaacatcataactaatagcaaaataaggcaaat 3697370  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 35457422 - 35457342
Alignment:
Q  53 aataaatttatagtaacaacaagataattaataaattgttgaattcaacat--tataattaatagtaaaataaggcaaatc 131  Q
    ||||||||| | |||| ||||| |||||||| ||||||||||| |||||||  |||||||||||| |||| |||| |||||    
T  35457422 aataaatttgtggtaaaaacaatataattaacaaattgttgaactcaacatcatataattaatagcaaaaaaaggaaaatc 35457342  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 18480186 - 18480089
Alignment:
Q  52 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagtcattataaaacaaat 149  Q
    |||||||||| | |||| |||||||||||||||||||||||||| ||||||| ||| ||||||| || |||||| ||||| ||| | |||||||||||    
T  18480186 aaataaatttgtggtaaaaacaagataattaataaattgttgaactcaacatcatatttaatagcaatataaggaaaatctgtcgtcataaaacaaat 18480089  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 32504973 - 32504903
Alignment:
Q  52 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaata 122  Q
    |||||||||| | |||| ||||||||||||||||||||||  || ||||||| ||| ||||||| ||||||    
T  32504973 aaataaatttgttgtaaaaacaagataattaataaattgtcaaactcaacatcatatttaatagcaaaata 32504903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 40873603 - 40873545
Alignment:
Q  70 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaa 128  Q
    |||||||||||||  ||||||| ||||||||||| |||| |||||| ||||||||||||    
T  40873603 aacaagataattatcaaattgtcgaattcaacatcataactaatagcaaaataaggcaa 40873545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 44207491 - 44207570
Alignment:
Q  52 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatc 131  Q
    |||||||||  | |||| |||||||||||||||||||||| ||| | ||| | ||| ||||||| ||||||||| |||||    
T  44207491 aaataaattcgtggtaaaaacaagataattaataaattgtcgaactaaacgtcatacttaatagcaaaataaggaaaatc 44207570  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 9645717 - 9645584
Alignment:
Q  35 ataagagaatagccggaaaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagt 134  Q
    |||| ||||||| ||  |||||||||| | |||| |||||||||||||| ||||||| ||| | || |||||| ||||||| |||| |||| ||||| |     
T  9645717 ataaaagaataggcgacaaataaatttgtggtaaaaacaagataattaacaaattgtcgaacttaaaattatacttaatagcaaaagaaggaaaatccgc 9645618  T
Q  135 cattataaaacaaatatgcaacataaaagaaatc 168  Q
    ||  ||||||||||| ||||||| |||| |||||    
T  9645617 caacataaaacaaatttgcaacaaaaaataaatc 9645584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 9651734 - 9651601
Alignment:
Q  35 ataagagaatagccggaaaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagt 134  Q
    |||| ||||||| ||  |||||||||| | |||| |||||||||||||| ||||||| ||| | || |||||| ||||||| |||| |||| ||||| |     
T  9651734 ataaaagaataggcgacaaataaatttgtggtaaaaacaagataattaacaaattgtcgaacttaaaattatacttaatagcaaaagaaggaaaatccgc 9651635  T
Q  135 cattataaaacaaatatgcaacataaaagaaatc 168  Q
    ||  ||||||||||| ||||||| |||| |||||    
T  9651634 caacataaaacaaatttgcaacaaaaaataaatc 9651601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 4608846 - 4608915
Alignment:
Q  335 atacatggagagatgcattgtgatttgtcggttatggatga-gaaaaatataggcaagtattggatcaaa 403  Q
    |||||||||||||| ||||||||||| |  |||| |||||| |||||||| |||||||||||| ||||||    
T  4608846 atacatggagagatacattgtgatttatgagttacggatgaggaaaaatagaggcaagtattgtatcaaa 4608915  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 4608593 - 4608694
Alignment:
Q  70 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagtcattataaaacaaatatgcaacataaaagaaatcc 169  Q
    |||||||||||||| ||| |  |||||||||||| ||||||||||  | ||||||| ||||||  ||   ||||| |||| | |||||||||| ||||||    
T  4608593 aacaagataattaacaaaatcctgaattcaacatcataattaataacataataaggtaaatcaaccaaattaaaataaatctacaacataaaataaatcc 4608692  T
Q  170 aa 171  Q
    ||    
T  4608693 aa 4608694  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 15368669 - 15368729
Alignment:
Q  70 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaat 130  Q
    |||||||||||||  ||||||||||||||||||| |||| |||||| ||||||||||||||    
T  15368669 aacaagataattatcaaattgttgaattcaacatcataactaatagcaaaataaggcaaat 15368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 42377932 - 42378059
Alignment:
Q  52 aaataaatttatagtaacaacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaatcagtcattataaaacaaatat 151  Q
    |||||||||| |  ||| |||||||||||||| ||||||||||| | ||| | ||| ||||||| ||||||||  |||||   ||  ||||||||||| |    
T  42377932 aaataaatttgtgataaaaacaagataattaacaaattgttgaactaaacgtcatacttaatagcaaaataagaaaaatccaccaacataaaacaaattt 42378031  T
Q  152 gcaacataaaagaaatccaaaaagaaat 179  Q
    ||||||||||| |||||| |||| ||||    
T  42378032 gcaacataaaacaaatcccaaaataaat 42378059  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 43088782 - 43088842
Alignment:
Q  70 aacaagataattaataaattgttgaattcaacattataattaatagtaaaataaggcaaat 130  Q
    |||||||||||||  ||||||| ||||||||||| |||| |||||| ||| ||||||||||    
T  43088782 aacaagataattatcaaattgtcgaattcaacatcataactaatagcaaattaaggcaaat 43088842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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