View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_11 (Length: 541)
Name: NF8251_high_11
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_11 |
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| [»] chr3 (6 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 63 - 541
Target Start/End: Original strand, 1607637 - 1608115
Alignment:
| Q |
63 |
atatacctaaaatattgaagatatttggtcttcaatacattctaattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaacc |
162 |
Q |
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||||||||||||||||||||||| ||| | || | | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1607637 |
atatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaacc |
1607736 |
T |
|
| Q |
163 |
ctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataacctttta |
262 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| |
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| T |
1607737 |
ctatcatatttatattactctatgtatgtcacaaaataaacattccataatttatctttcatttaattcttcctaaataaagttattgaataacttttta |
1607836 |
T |
|
| Q |
263 |
gcagttcaatacttaaattttaaatagagaaatataaaatcattgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttcctta |
362 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607837 |
gcagcacaatacttaaattttaaatagaaaaatataaaatcattgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttcctta |
1607936 |
T |
|
| Q |
363 |
tcatttcagtgacattggtttgcacaatgaaatcgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
462 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607937 |
tcatttcagtgacattggtttgcataatgaaatcgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
1608036 |
T |
|
| Q |
463 |
tagccatgtttgtgcatcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaa |
541 |
Q |
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| T |
1608037 |
tagccatgtttgtgcatcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaa |
1608115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 63 - 541
Target Start/End: Original strand, 1624647 - 1625122
Alignment:
| Q |
63 |
atatacctaaaatattgaagatatttggtcttcaatacattctaattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaacc |
162 |
Q |
| |
|
||||||||||||||||||||||| ||| | || | | ||| |||||||||| |||||||||||||||||||||||||||||| | |||||||| |||| |
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| T |
1624647 |
atatacctaaaatattgaagatacttgaacatctacaaattataattgctct--gtgtcttcttattttaaaattcatttttatatacccatttttaacc |
1624744 |
T |
|
| Q |
163 |
ctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataacctttta |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||| |
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| T |
1624745 |
ctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatctttcatttaattcttcctaaataaagttattgaataatttttta |
1624844 |
T |
|
| Q |
263 |
gcagttcaatacttaaattttaaatagagaaatataaaatcattgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttcctta |
362 |
Q |
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||||| |||||||||| ||||||||||| ||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1624845 |
gcagtacaatacttaa-ttttaaatagaaaaaaataaaatcattgttaatacctttgttatgtttcagaaaatgcatattgatggctaagatgttcctta |
1624943 |
T |
|
| Q |
363 |
tcatttcagtgacattggtttgcacaatgaaatcgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
462 |
Q |
| |
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|||| ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624944 |
tcatctcaatgacattggtttgcataatgaaattgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
1625043 |
T |
|
| Q |
463 |
tagccatgtttgtgcatcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaa |
541 |
Q |
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|||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1625044 |
gagccatgtttgtacatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaa |
1625122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 276 - 541
Target Start/End: Original strand, 1631340 - 1631605
Alignment:
| Q |
276 |
taaattttaaatagagaaatataaaatcattgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttccttatcatttcagtgac |
375 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631340 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttccttatcatttcagtgac |
1631439 |
T |
|
| Q |
376 |
attggtttgcacaatgaaatcgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgttagccatgtttgt |
475 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631440 |
attggtttgcataatgaaatcgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgttagccatgtttgt |
1631539 |
T |
|
| Q |
476 |
gcatcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaa |
541 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631540 |
gcatcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaa |
1631605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 258 - 541
Target Start/End: Complemental strand, 10819219 - 10818937
Alignment:
| Q |
258 |
ttttagcagttcaatacttaaattttaaatagagaaatataaaatcattgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgtt |
357 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| |
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| T |
10819219 |
ttttagcactacaatacttac-ttttaaatagaaaaaaataaaatcattgttagtacctgttttatgattcaggaaatgcatattgatggctaagatgtt |
10819121 |
T |
|
| Q |
358 |
ccttatcatttcagtgacattggtttgcacaatgaaatcgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaa |
457 |
Q |
| |
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||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10819120 |
ccttatcatctcagtgacattggcttgcataatgaaattgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaa |
10819021 |
T |
|
| Q |
458 |
gttgttagccatgtttgtgcatcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaa |
541 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |
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| T |
10819020 |
gttgtgagccatgtttgtgcatcatttggtgaacaatttttacttgcattgtttaagccttcaagtgtgcggttgagatgaaaa |
10818937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 63 - 285
Target Start/End: Original strand, 1630630 - 1630852
Alignment:
| Q |
63 |
atatacctaaaatattgaagatatttggtcttcaatacattctaattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaacc |
162 |
Q |
| |
|
||||||||||||||||||| ||| ||| | || | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630630 |
atatacctaaaatattgaatatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaacc |
1630729 |
T |
|
| Q |
163 |
ctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataacctttta |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1630730 |
ctatcatatttatattactctatgtatgtcacaaaataaacactcaataatttatctttcatttaattcttcctgaataaagttattgaataacctttta |
1630829 |
T |
|
| Q |
263 |
gcagttcaatacttaaattttaa |
285 |
Q |
| |
|
||||| ||||||||||||||||| |
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| T |
1630830 |
gcagtacaatacttaaattttaa |
1630852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 10819618 - 10819521
Alignment:
| Q |
63 |
atatacctaaaatattgaagatatttggtcttcaatacattctaattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaa |
160 |
Q |
| |
|
|||||||||||| |||||||| | || || || | | ||| |||||| ||||||||||||| ||||||||||||| |||||| |||||| ||||||| |
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| T |
10819618 |
atatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattcttttttagcttcccgttttcaa |
10819521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 304 - 541
Target Start/End: Original strand, 18785826 - 18786063
Alignment:
| Q |
304 |
attgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttccttatcatttcagtgacattggtttgcacaatgaaatcgaaatct |
403 |
Q |
| |
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||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||| |
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| T |
18785826 |
attgttattacctttgttatgttttaggaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaattgaaatct |
18785925 |
T |
|
| Q |
404 |
tgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgttagccatgtttgtgcatcatttggtgaacaatttttgctag |
503 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| | |
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| T |
18785926 |
tgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgtgagccatgtttgtacatcattcggtgaacaatttttgcttg |
18786025 |
T |
|
| Q |
504 |
cattgtttaagccttcaagtgtacggttgagatgaaaa |
541 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18786026 |
cattgtttaagccttcaagtgtatggttgagatgaaaa |
18786063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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