View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_16 (Length: 472)
Name: NF8251_high_16
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 21 - 451
Target Start/End: Complemental strand, 31203023 - 31202593
Alignment:
| Q |
21 |
tcccgcaatgccggcaacatgagggcaagacatagaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcactt |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31203023 |
tcccgcaatgccggcaacatgagggcaagacatagaagttccttgtagtacattgaatggaaaattgttgcgattgtctgtttttaaattagatgcactt |
31202924 |
T |
|
| Q |
121 |
gcgtacaacgaataggcagcaagtatgttcacacctggtgcagttacatcaggctgaaacaaaaaacaaattaaataccccattgnnnnnnnnngacaac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31202923 |
gcgtacaacgaataggcagcaagtatgttcacacctggtgcagttacatcaggctgaaacaaaaaacaaattaaataccccattgaaaaaaaaagacaac |
31202824 |
T |
|
| Q |
221 |
taaggaggaccattactatagatagttgattactagtccatgtatatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatg |
320 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202823 |
taaggaagaccattactatagatagttgattactagtccatgtatatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatg |
31202724 |
T |
|
| Q |
321 |
aagccataactggagctggctttcttccatagagtgtttttgctcttgaaaactttattgtagtaccggcctttaatttagagtccctgcaattttaaca |
420 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31202723 |
aagccattactggagctggctttcttccatagagtgtttttgctcctgaaaactttattgtagtaccagcctttaatttagagtccctgcaattttaaca |
31202624 |
T |
|
| Q |
421 |
tgtcaaacaaaggtaacagctttaaaagtaa |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
31202623 |
tgtcaaacaaaggtaacagctttaaaagtaa |
31202593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 31062054 - 31062210
Alignment:
| Q |
34 |
gcaacatgagggcaagacatagaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||||||||||| ||||||||||||||| || |||| |||| |
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| T |
31062054 |
gcaacatgagggcaagacatagaagttccttgcattacattgaagggaaaacctcggcgattgtctgttagtaaattagatgcactagcaaacaatgaat |
31062153 |
T |
|
| Q |
134 |
aggcagcaagtatgttcacacctggtgcagttacatcaggctgaaacaaaaaacaaa |
190 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
31062154 |
aggcagcaagtatgttcacaccaggtgcagttacatcaggctgaaacaaaaaacaaa |
31062210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 31107211 - 31107377
Alignment:
| Q |
20 |
atcccgcaatgccggcaacatgagggcaagacatagaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcact |
119 |
Q |
| |
|
|||| ||| ||||||||||||| || |||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
31107211 |
atccagcagtgccggcaacatgtggacaagacatagaagttccttgcattacattgaatggaaaacctcgacgagtgtctgttattaaattagatgcact |
31107310 |
T |
|
| Q |
120 |
tgcgtacaacgaataggcagcaagtatgttcacacctggtgcagttacatcaggctgaaacaaaaaa |
186 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
31107311 |
tgcaaacaatgaataggcagcgagtatgttcacacctggcgcagttacatcaggctgaaacgaaaaa |
31107377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 31049726 - 31049887
Alignment:
| Q |
29 |
tgccggcaacatgagggcaagacatagaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaa |
128 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||| ||||||| |||| |
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| T |
31049726 |
tgccagcaacatgaggacaagacatagaagttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaaacaa |
31049825 |
T |
|
| Q |
129 |
cgaataggcagcaagtatgttcacacctggtgcagttacatcaggctgaaacaaaaaacaaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
31049826 |
tgaataggcagcaagtatgttcacacccggcgcagttacatcaggctgaaacaaaaaacaaa |
31049887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 31162622 - 31162783
Alignment:
| Q |
29 |
tgccggcaacatgagggcaagacatagaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaa |
128 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||| ||||||| ||| |
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|
| T |
31162622 |
tgccagcaacatgaggacaagacatagaagttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaagcaa |
31162721 |
T |
|
| Q |
129 |
cgaataggcagcaagtatgttcacacctggtgcagttacatcaggctgaaacaaaaaacaaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
31162722 |
tgaataggcagcaagtatgttcacacccggcgcagttacatcaggctgaaacaaaaaacaaa |
31162783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 31144804 - 31144959
Alignment:
| Q |
35 |
caacatgagggcaagacatagaagttccttgtagtacattgaatggaaaattgttgcgattgtctgttattaaattagatgcacttgcgtacaacgaata |
134 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||| ||||||| ||| ||||| |
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|
| T |
31144804 |
caacatgaggacaagacatagaagttccttgttgtatattgaatggaaaacctcgacgattgtctgttactaaattagacacacttgcaagcaatgaata |
31144903 |
T |
|
| Q |
135 |
ggcagcaagtatgttcacacctggtgcagttacatcaggctgaaacaaaaaacaaa |
190 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
31144904 |
ggcagcaagtatgttcacacccggcgcagttacatcaggctgaaacaaaaaacaaa |
31144959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 265 - 350
Target Start/End: Original strand, 31145031 - 31145116
Alignment:
| Q |
265 |
tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat |
350 |
Q |
| |
|
|||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31145031 |
tataaacaccttgagtatatatggttgaactttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat |
31145116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 350
Target Start/End: Original strand, 31162855 - 31162940
Alignment:
| Q |
265 |
tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccat |
350 |
Q |
| |
|
|||| ||||||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31162855 |
tataaacaccttgagtatatatggttgaacttgatttggtcctctagatgagaatgaagccataactggagctggctttcttccat |
31162940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 265 - 347
Target Start/End: Original strand, 31049959 - 31050041
Alignment:
| Q |
265 |
tatatacaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttc |
347 |
Q |
| |
|
|||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31049959 |
tataaacaccttgagtatatatggctgaacttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc |
31050041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 31062450 - 31062544
Alignment:
| Q |
270 |
acaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttccatagagtgtttttgct |
364 |
Q |
| |
|
||||||||||||| |||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
31062450 |
acaccttgagtatatatggttgaacttgatttggacctctagatgagaatgaagccataactggagctggctttcttccaatgagtgttattgct |
31062544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 31107456 - 31107533
Alignment:
| Q |
270 |
acaccttgagtattgatggctgaattttatttggtcctctagatgagaatgaagccataactggagctggctttcttc |
347 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||| |
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|
| T |
31107456 |
acaccttgagtattgatggttgaactttatttggtcctctagaagagtaggaagccataactggagctggctttcttc |
31107533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 37016427 - 37016467
Alignment:
| Q |
26 |
caatgccggcaacatgagggcaagacatagaagttccttgt |
66 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||| |
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|
| T |
37016427 |
caatgccagcaacatgaggacaagacattgaagttccttgt |
37016467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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