View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_19 (Length: 424)
Name: NF8251_high_19
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 424
Target Start/End: Complemental strand, 45465493 - 45465089
Alignment:
| Q |
20 |
cactgctcccttttttccttcaagcgttgccgcttatatacgaccaaattttcaggccatgccttcccttcctgtgctccatccaccttctttctccgaa |
119 |
Q |
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| T |
45465493 |
cactgctcccttttttccttcaagcgttgccgcttatatacgaccaaattttcaggccatgccttcccttcctgtgctccatccaccttctttctccaaa |
45465394 |
T |
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| Q |
120 |
catcttcagcagaatcttcttgtgttggagcatcagggatcacctgaagaagttccataggtgttgaagcaggatccagctccaagcaacctttaggagc |
219 |
Q |
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| T |
45465393 |
catcttcagcagaatcttcttgtgttggagcatcagtgatcacctgaagaagttccataggtgttgaagcaggatccagctccaagcaacctttaggagc |
45465294 |
T |
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| Q |
220 |
attgtcaccttcttgtccagtaagcaagtatgaaggtacctggtgtgaaaaacgaaacatctctgctcttggaatgttcctgatttttcttggatcagca |
319 |
Q |
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| T |
45465293 |
attgtcaccttcttgtccagtaagcaagtatgaaggtacctggtgtgaaaaacgaaacatctctgctcttggaatgttcctgatttttcttggatcagca |
45465194 |
T |
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| Q |
320 |
ttctggcggaatactgtcttgaaacctgcaaccttgacaagcggagcaacattcacaccatgttcttcactgtagtcttcaagcacttccaccatgtcgt |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45465193 |
ttctggcggaatactgtcttgaaacctgcaaccttgacaagcggagcaacattcacaccatgttcttcactgtagtcttcaagcacttccaccatgttgt |
45465094 |
T |
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| Q |
420 |
attga |
424 |
Q |
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| T |
45465093 |
attga |
45465089 |
T |
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