View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_20 (Length: 397)
Name: NF8251_high_20
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Original strand, 2432105 - 2432465
Alignment:
| Q |
20 |
tcaatgcagctttaaaaaggtctgttattaacaattttatgccagattttgaatcaaattttttattgacacaaattgtagttacctatgtaacatcgac |
119 |
Q |
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| T |
2432105 |
tcaatgcagctttaaaaaggtctgttattaacaattttatggcagaattttaatcaaattttttattgacgcaaattgtagttacctatgtaacatcgac |
2432204 |
T |
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| Q |
120 |
gcgtaatattgaaggtgtgtcctacacatgctgtagcatcgacatgttatatcgacaagttatattgaaggtgtgtcctacaccagcacaacacagtcac |
219 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432205 |
gcgttatattgaaggtgtgtcctacacatgctgtagcatcgacatgttatatcgacacattatattgaaggtgtgtcctacaccagcacaacacagtcac |
2432304 |
T |
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| Q |
220 |
ttacaaatacatacagtcactactcacttctatttttccaaattattgccatgtctatgcatcagtgttagtatcaatctgtgtcggtgcttcatagtta |
319 |
Q |
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| T |
2432305 |
ttacaaatacatacagtcactactcacttctatttttccaaattattgccatgtctatgcatcagtgttagtatcaatctgtgtcggtgcttcatagtta |
2432404 |
T |
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| Q |
320 |
ctacttactacgcttagaaacatgagacacactaatgagtagttgatattgatatcaatgt |
380 |
Q |
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| T |
2432405 |
ctacttactacgcttagaaacatgagacacactaatgagtagttgatattgatatcaatgt |
2432465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 2435540 - 2435609
Alignment:
| Q |
20 |
tcaatgcagctttaaaaaggtctgttattaacaattttatgccagattttgaatcaaattttttattgaca |
90 |
Q |
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| T |
2435540 |
tcaatgcaactttaaaaaggtctgtttttaacatttttatggcagatttt-aatcaatttgtttattgaca |
2435609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 1459480 - 1459551
Alignment:
| Q |
20 |
tcaatgcagctttaaaaaggtctgttattaacaattttatgccagattttgaatcaaattt-tttattgaca |
90 |
Q |
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| T |
1459480 |
tcaatgcagctttgaaaaggtctgtttttaacatttttatggtagatttttaatttaatttgtttattgaca |
1459551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 2429187 - 2429258
Alignment:
| Q |
20 |
tcaatgcagctttaaaaaggtctgttattaacaattttatgccagattttgaatcaaattt-tttattgaca |
90 |
Q |
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||||||||||||| |||||||||||| |||||| ||||||| ||||||| ||| ||||| |||||||||| |
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| T |
2429187 |
tcaatgcagctttgaaaaggtctgtttttaacatttttatggtagatttttaatttaatttgtttattgaca |
2429258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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