View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_24 (Length: 379)
Name: NF8251_high_24
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 38699549 - 38699820
Alignment:
| Q |
1 |
cataagtaaactgatgtgatggaatagggtttgagcataattaagttggataggttacatacaagaagagcaaaggtccttctccaacatcgaatgaaga |
100 |
Q |
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| T |
38699549 |
cataagtaaactgatgtgatggaatagggtttgagcataattaagttggataggttacatacaagaagagcaaaggtccttctccaacatcgattgaaga |
38699648 |
T |
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| Q |
101 |
aaatgttgtcatgattttttattgcattgttcagatccatcgtttattttgcaacatcaatttacaacaatcatatataacaaatttatctgtcgtccaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38699649 |
aaatattgtcatgattttttattgcattgttcagatccatcgtttattttgcaacatcaatttacaacaatcatatataacaaatttatctgtcgtcc-- |
38699746 |
T |
|
| Q |
201 |
ggaaggaggtcatagaactttcagcgtccgatgtgtgaatctaaagcatctaaactattatagaacttgcaaaatc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38699747 |
--aaggaggtcatagaactttcagcgtccgatgtgtgaatcttaagcatctaaactattatagaacttgcaaaatc |
38699820 |
T |
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