View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_27 (Length: 361)
Name: NF8251_high_27
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 38884832 - 38884488
Alignment:
| Q |
1 |
gcaataagtgtttgagctcgagcaattttgtaaacctcctcaagtgcattcatggtttgtggaggtggtatccaaccaattgcgctgaaaatatccttct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38884832 |
gcaataagtgtttgagctcgagcaattttgtaaacctcctcaagtgcattcatggtttgtggaggtggtatccaaccaattgcgctgaaaatatccttct |
38884733 |
T |
|
| Q |
101 |
ggaagagattttggctataaaatgctatatcaagcaagaaccaagtgcttgttgtaccaagtaaatgtagtccatgtcgactcatgaactcttttgagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38884732 |
ggaagagattttggctataaaatgctatatcaagcaagaaccaagtgcttgttgtaccaagtaaatgtagtccatgtcgactcatgaactcttttgagaa |
38884633 |
T |
|
| Q |
201 |
caagccatatgctttagccttttccggctccgctttctgcggttcggcttcaatctcaacctgcaaaaccttagacatatccgctgcagcctgcgctgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38884632 |
caagccatatgctttagccttttccggctccgctttctgcggttcggcttcaatctcaacctgcaaaaccttagacatatccgctgcagcctgcgctgtg |
38884533 |
T |
|
| Q |
301 |
ttcttagcaactaaagctgtataacgagcagtttctggcatcttc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38884532 |
ttcttagcaactaaagctgtataacgagcagtttctggcatcttc |
38884488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 38894018 - 38893680
Alignment:
| Q |
1 |
gcaataagtgtttgagctcgagcaattttgtaaacctcctcaagtgcattcatggtttgtggaggtggtatccaaccaattgcgctgaaaatatccttct |
100 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |||||||||| |
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| T |
38894018 |
gcaataagtgtttgagctcttgcgattttgtaaacctcctcaagtgcattcatagtttgtgcaggtggtatccaaccaattgcactgaagatatccttct |
38893919 |
T |
|
| Q |
101 |
ggaagagattttggctataaaatgctatatcaagcaagaaccaagtgcttgttgtaccaagtaaatgtagtccatgtcgactcatgaactcttttgagaa |
200 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
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| T |
38893918 |
ggaagagattttgactgtaaaatgctatatcaagcaagaaccaagtgcttgttgtaccaagtaaatgtagtccatgacgactcatgaactcctttgacaa |
38893819 |
T |
|
| Q |
201 |
caagccatatgctttagccttttccggctccgctttctgcggttcggcttcaatctcaacctgcaaaaccttagacatatccgctgcagcctgcgctgtg |
300 |
Q |
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||||||||||| ||| ||||| |||||||| || ||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
38893818 |
caagccatatgattttgcctt------ctccgcttgttgtggttcagcttgaatctcaacctgcaaaaccttagacatatctgctgcagcctgcttggtg |
38893725 |
T |
|
| Q |
301 |
ttcttagcaactaaagctgtataacgagcagtttctggcatcttc |
345 |
Q |
| |
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| ||||||||||| ||| || |||||||||||||||||||||||| |
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|
| T |
38893724 |
tccttagcaactagagcagtgtaacgagcagtttctggcatcttc |
38893680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 30620054 - 30620196
Alignment:
| Q |
1 |
gcaataagtgtttgagctcgagcaattttgtaaacctcctcaagtgcattcatggtttgtggaggtggtatccaaccaattgcgctgaaaatatccttct |
100 |
Q |
| |
|
|||||||||||||| || | |||||||| |||||||| |||||||||||||| || | || || || |||||||||||||| ||||| |||||||| | |
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| T |
30620054 |
gcaataagtgtttgcgccctcgcaattttataaacctcttcaagtgcattcatcgtctttgcagacggaatccaaccaattgcactgaagatatcctttt |
30620153 |
T |
|
| Q |
101 |
ggaagagattttggctataaaatgctatatcaagcaagaacca |
143 |
Q |
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|||| ||||| || || |||||||| ||||||||||| ||||| |
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| T |
30620154 |
ggaaaagattctgactgtaaaatgcaatatcaagcaaaaacca |
30620196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 33115908 - 33115832
Alignment:
| Q |
70 |
atccaaccaattgcgctgaaaatatccttctggaagagattttggctataaaatgctatatcaagcaagaaccaagt |
146 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| |||||||| |||||| | || ||||| | |||||||||||| |
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|
| T |
33115908 |
atccatccaattgcactgaaaatatctttctggaaaagattttgactataataagcaatatccaacaagaaccaagt |
33115832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 16184836 - 16184718
Alignment:
| Q |
1 |
gcaataagtgtttgagctcgagcaattttgtaaacctcctcaagtgcattcatggtttgtggaggtggtatccaaccaattgcgctgaaaatatccttct |
100 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||| | || ||||||||| || || || |||||||| ||||||||||| ||||| ||||| | |
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| T |
16184836 |
gcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcatttcttttgccggaggtatccatccaattgcgctaaaaatgtcctttt |
16184737 |
T |
|
| Q |
101 |
ggaagagattttggctata |
119 |
Q |
| |
|
|||| ||||| || ||||| |
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| T |
16184736 |
ggaaaagattctgactata |
16184718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 16174790 - 16174875
Alignment:
| Q |
256 |
tcaacctgcaaaaccttagacatatccgctgcagcctgcgctgtgttcttagcaactaaagctgtataacgagcagtttctggcat |
341 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||| || | |||||||||||| | ||| || |||||||| ||||||||||| |
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| T |
16174790 |
tcaacttgcaataccttagacatatccgcagcagcttgtttcgcgttcttagcaacaagagccgtgtaacgagctgtttctggcat |
16174875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 16223962 - 16223877
Alignment:
| Q |
256 |
tcaacctgcaaaaccttagacatatccgctgcagcctgcgctgtgttcttagcaactaaagctgtataacgagcagtttctggcat |
341 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||| || | |||||||||||| | ||| || |||||||| ||||||||||| |
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| T |
16223962 |
tcaacttgcaacaccttagacatatccgcagcagcttgtttcgcgttcttagcaacaagagccgtgtaacgagctgtttctggcat |
16223877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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