View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8251_high_3 (Length: 772)
Name: NF8251_high_3
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Original strand, 55101841 - 55102504
Alignment:
| Q |
18 |
gaatttattctaaaattgattcaattcttacttcaggctagaataaattcttcaagaacttgaaattgtctgaataggatta---ttattattattttga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55101841 |
gaatttattctaaaattgattcaattcttacttcaggctagaataaattcttcaagaacttgaaattgtctgaataggattattattattattattttga |
55101940 |
T |
|
| Q |
115 |
ttcatttacatatgcaatataattgagtgtttccaattccacaggcaagggtgactcttgaaaaccatcatcaatatcggcatgtagacaaaccagggtg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55101941 |
ttcatttacatatgcaatataattgagtgtttccaattccacaggcaagggtgactcttgaaaaccatcatcaatatcggcatgtagacaaaccagggtg |
55102040 |
T |
|
| Q |
215 |
gaaactaggatggacatgggctaataaggaggtgatatggtcaatgagtggtgcaattgcaactgataggggtgattgctcatcttatagtggttctcag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55102041 |
gaaactaggatggacatgggctaataaggaggtgatatggtcaatgagtggtgcaattgcaactgataggggtgattgctcatcttatagtggttctcag |
55102140 |
T |
|
| Q |
315 |
atgccacattcatgcaaaaaagatccaatcatagttgatatatctccagatgtgtcacaaaacaggtcagaccattgctgtcgtggtggccgcctctctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55102141 |
atgccacattcatgcaaaaaagatccaatcatagttgatatatctccagatgtgtcacaaaacaggtcagaccattgctgtcgtggtggccgcctctctg |
55102240 |
T |
|
| Q |
415 |
cccgagccgttgattctttcaattcattgtcttcatttgaacttgaagtaagaaacttggaggaaaaagaaaattcacttggacaagctcctaataatgt |
514 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55102241 |
cccgagctgttgattctttcaattcattgtcttcatttgaacttgaagtaagaaacttggaggaaaaagaaaattcacttggacaagctcctaataatgt |
55102340 |
T |
|
| Q |
515 |
tacattcatggccccaggtcctggttacacttgtagctcatttctgactgctgatccctcagtttccttagattttggtggacagagacaagttccagtt |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55102341 |
tacattcatggccccaggtcctggttacacttgtagctcatttctgacttctgatccctcagtgtccttagattttggtggacagagacaagttccagtt |
55102440 |
T |
|
| Q |
615 |
ctcagtaagttacccaactcaaattctcttaaaaataattaaacaaagggcattgtttgatgtc |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55102441 |
ctcagtaagttacccaactcaaattctcttaaaaataattaaacaaagggcattgtttgatgtc |
55102504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 672 - 757
Target Start/End: Original strand, 55102618 - 55102703
Alignment:
| Q |
672 |
tgatgtcttgatattcgtgatttttctatcgtgtcatatagtactgctgtctgccgttaatcagatatagtgagtcataacaatgt |
757 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55102618 |
tgatttcttgatattcgtgatttttctatcgtgtcatatagtactgctgtctgccgttaatcagatatagtgagtcataacaatgt |
55102703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University