View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_high_31 (Length: 332)

Name: NF8251_high_31
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_high_31
NF8251_high_31
[»] chr5 (1 HSPs)
chr5 (20-315)||(14305124-14305419)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 14305419 - 14305124
Alignment:
Q  20 gctactagaggttcaattactcgagtctctctagcaggaaacgtcctagccaacgaaccaatagacttaatcgccggaatttgcatcaacgggctatcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14305419 gctactagaggttcaattactcgagtctctctagcaggaaacgtcctagccaacgaaccaatagacttaatcgccggaatttgcatcaacgggctatcaa 14305320  T
Q  120 cctctttaagtatcctcaacagctgctccacaacagctttagcaggaggtgagttggtcttaaatgcaccacgtcgaagatcagcattagattcagccgc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||    
T  14305319 cctctttaagtatcctcaacagctgctccacaacagctttagcaggaggtgagttggtcttaaacgcacctcgtcgaagatcagcattagattcagctgc 14305220  T
Q  220 agccgttatctccattatagtcatcaaacaattccgctgcaactccccctgttccttctcaacaatcttagccaaacaaagcatccctttcgtctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14305219 agccgttatctccattatagtcatcaaacaattccgctgcaactccccctgttccttctcaacaatcttagccaaacaaagcatccctttcgtctc 14305124  T

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