View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_34 (Length: 305)
Name: NF8251_high_34
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 12683215 - 12682934
Alignment:
| Q |
19 |
gtttagaccaaacttgttcataatgacactgctgctagcttctgattgtaagcaatgacggaactgcactgctacatattttgcgtgaccctaaaatacc |
118 |
Q |
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| T |
12683215 |
gtttagaccaaacttgttcataatgacactgct---agcttctgattgtaagcaatgacggaactgcactgctacatattttgcgtgaccctaaaatacc |
12683119 |
T |
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| Q |
119 |
ggttcaaaggacgaaaccgtacatatgtttcatgattttgtgtagcagtttataaacagaattgctatatatagaggaaagttgcaaatgaagccaaata |
218 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683118 |
ggttcaaaggacgacaccgtacatatgcttcatgattttgtgtagcagtttataaacagaattgctatatatagaggaaagttgcaaatgaagccaaata |
12683019 |
T |
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| Q |
219 |
taatcatatttattgtcatcatcatatgatctatttattctacttaaataaatccatcatgagctctagcatctctgcttctcca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
12683018 |
taatcatatttattgtcatcatcatatgatctatttattctacttaaataaatccatcatgagctctagcatctctacttatcca |
12682934 |
T |
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