View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_35 (Length: 297)
Name: NF8251_high_35
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_35 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 34687057 - 34686761
Alignment:
| Q |
1 |
ggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggttttgatattcgattatttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687057 |
ggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggttttgatattcgattatttgaa |
34686958 |
T |
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| Q |
101 |
agtcgtgttcgttaaccgttttgagggaaatccaataaataaccatatgactcaacccaaccggttcaaaataaactcgccggttcactctacttttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686957 |
agtcgtgttcgttaaccgttttgagggaaatccaataaataaccatatgactcaacccaaccggttcaaaataaactcgccggttcactctacttttctt |
34686858 |
T |
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| Q |
201 |
tttaccattcacaatcaaaaccaacttattttaccattcacatttaaaaactttttgattagatnnnnnnnnttgtaaataaataaatttaaattga |
297 |
Q |
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| T |
34686857 |
tttaccattcacaatcaaaaccaacttattttaccattcacatttaaaaactttttgattagataaaaaaaattgtaaataaataaatttaaattga |
34686761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 26985002 - 26984706
Alignment:
| Q |
1 |
ggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggttttgatattcgattatttgaa |
100 |
Q |
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| T |
26985002 |
ggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaattgttggtgtttggagggaaagggtttttatattcgattatttgaa |
26984903 |
T |
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| Q |
101 |
agtcgtgttcgttaaccgttttgagggaaatccaataaataaccatatgactcaacccaaccggttcaaaataaactcgccggttcactctacttttctt |
200 |
Q |
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| T |
26984902 |
agtcgtgttcgttaaccgttttgagggaaatccaataaataaccatatgactcaacccaaccggttcaaaataaactcgccggttcactcttcttttctt |
26984803 |
T |
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| Q |
201 |
tttaccattcacaatcaaaaccaacttattttaccattcacatttaaaaactttttgattagatnnnnnnnnttgtaaataaataaatttaaattga |
297 |
Q |
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| T |
26984802 |
tttaccattcacaatcaaaaccaacttattttaccattcacatttaaaaacttttttattagataaaaaaaattgtaaataaataaatttaaattga |
26984706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27024799 - 27024702
Alignment:
| Q |
1 |
ggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggttttgatattcgattatttgaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||| | ||||||||||||||||||||| |
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| T |
27024799 |
ggtggtccggtgagggacggttacggtggtcggagaataacgcggttagttgaagtgttgatg-ttggagggaaagag-tttgatattcgattatttgaa |
27024702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 27080502 - 27080610
Alignment:
| Q |
156 |
cccaaccggttcaaaataaactcgccggttcactctacttttctttttacca--ttcacaatcaaaaccaacttattttaccattcacatttaaaaactt |
253 |
Q |
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|||||| |||||||||||||||| |||||||||||| |||| | || | ||| |||||||| ||||||||||||||||||||||||||||||| | |
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| T |
27080502 |
cccaactggttcaaaataaactcaccggttcactcttttttttcgtctaaaaacttcccaatcaaa-ccaacttattttaccattcacatttaaaaac-t |
27080599 |
T |
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| Q |
254 |
tttgattagat |
264 |
Q |
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| T |
27080600 |
tttgattagat |
27080610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 27080454 - 27080498
Alignment:
| Q |
55 |
atgttggtgtttggagggaaagggttttgatattcgattatttgaa |
100 |
Q |
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| T |
27080454 |
atgttggtgtt-ggagggaaagggttttgatatttggttatttgaa |
27080498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 138 - 264
Target Start/End: Complemental strand, 30227293 - 30227162
Alignment:
| Q |
138 |
aataaccatatgactcaacccaaccggttcaaaataaactcgccggttcactc-----tacttttctttttaccattcacaatcaaaaccaacttatttt |
232 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
30227293 |
aataaccatattactcaacccaaccggttcaaaataaactcgccggttcactcttcttttcttttctttttacccttcacaatcaaaaccaacttatttt |
30227194 |
T |
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| Q |
233 |
accattcacatttaaaaactttttgattagat |
264 |
Q |
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| T |
30227193 |
accattcacatttaaaaacttttttattagat |
30227162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30227442 - 30227361
Alignment:
| Q |
1 |
ggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaagggtttt |
82 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
30227442 |
ggtggtccggcgagagacggttacggtggtcggagaatggcgcggttagttgaagtgttggtgtttggagggaaatggtttt |
30227361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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